Lag0021553 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0021553
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionankyrin repeat-containing protein NPR4-like
Locationchr7: 9108316 .. 9108861 (-)
RNA-Seq ExpressionLag0021553
SyntenyLag0021553
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGATAATTCTTCTTCATCTTTTGCTGCAGTCTCCTCTACAGCAGCAGCTTCAGCTTCAGGCAACGTTTCCACAATTGCGACCGTTATTAGCTCGTCATTTGGACATCCGCTTAGCACTGTCTTGACGGTAAAACTAGATGAGAAGAATTACTTGTTATGGAGGGGAATAGTTCTTGCCATTCTTCATGGATAGAAAGTCGATGGTTATATCCTCGGCAACAAAGCTCAACCATCTGAGTTCATTGAAGTTACAACAGGAACAGTGAAGACCCTTGAACCAAATCCATTGTATGAGGAATGGATTACTGTCGACCAAGCACTTTGCGGGTGGTTGTTCGGGTCTATGACACCAGCGATTGCAGCTGATGTGGTGAGTTTCAAGACGTCTAGAGAGGTTTGGAAAGTGCTAGAGAAGGTGTCGCCACGTGCCTGCGACGCGGAGCGGCCGACATCCTCGAAAATGGGTAAAAATAAAGGAGTCGCCACCAATCTTTTTTATGGTGTGATTGGACACCAAAATACAATAAAATTATCATTTTAA

mRNA sequence

ATGAGTGATAATTCTTCTTCATCTTTTGCTGCAGTCTCCTCTACAGCAGCAGCTTCAGCTTCAGGCAACGTTTCCACAATTGCGACCGTTATTAGCTCGTCATTTGGACATCCGCTTAGCACTGTCTTGACGAAAGTCGATGGTTATATCCTCGGCAACAAAGCTCAACCATCTGAGTTCATTGAAGTTACAACAGGAACAGTGAAGACCCTTGAACCAAATCCATTGTATGAGGAATGGATTACTGTCGACCAAGCACTTTGCGGGTGGTTGTTCGGGTCTATGACACCAGCGATTGCAGCTGATGTGGTGAGTTTCAAGACGTCTAGAGAGGTTTGGAAAGTGCTAGAGAAGGTGTCGCCACGTGCCTGCGACGCGGAGCGGCCGACATCCTCGAAAATGGGTAAAAATAAAGGAGTCGCCACCAATCTTTTTTATGGTGTGATTGGACACCAAAATACAATAAAATTATCATTTTAA

Coding sequence (CDS)

ATGAGTGATAATTCTTCTTCATCTTTTGCTGCAGTCTCCTCTACAGCAGCAGCTTCAGCTTCAGGCAACGTTTCCACAATTGCGACCGTTATTAGCTCGTCATTTGGACATCCGCTTAGCACTGTCTTGACGAAAGTCGATGGTTATATCCTCGGCAACAAAGCTCAACCATCTGAGTTCATTGAAGTTACAACAGGAACAGTGAAGACCCTTGAACCAAATCCATTGTATGAGGAATGGATTACTGTCGACCAAGCACTTTGCGGGTGGTTGTTCGGGTCTATGACACCAGCGATTGCAGCTGATGTGGTGAGTTTCAAGACGTCTAGAGAGGTTTGGAAAGTGCTAGAGAAGGTGTCGCCACGTGCCTGCGACGCGGAGCGGCCGACATCCTCGAAAATGGGTAAAAATAAAGGAGTCGCCACCAATCTTTTTTATGGTGTGATTGGACACCAAAATACAATAAAATTATCATTTTAA

Protein sequence

MSDNSSSSFAAVSSTAAASASGNVSTIATVISSSFGHPLSTVLTKVDGYILGNKAQPSEFIEVTTGTVKTLEPNPLYEEWITVDQALCGWLFGSMTPAIAADVVSFKTSREVWKVLEKVSPRACDAERPTSSKMGKNKGVATNLFYGVIGHQNTIKLSF
Homology
BLAST of Lag0021553 vs. NCBI nr
Match: XP_022143579.1 (ankyrin repeat-containing protein NPR4-like [Momordica charantia])

HSP 1 Score: 104.8 bits (260), Expect = 7.2e-19
Identity = 59/117 (50.43%), Postives = 69/117 (58.97%), Query Frame = 0

Query: 25  STIATVISSSFGHPLSTVLT----------------------KVDGYILGNKAQPSEFIE 84
           +T+ + I+ SFGHPLST LT                      KVDGY+L  K  PS++  
Sbjct: 17  ATVFSAINISFGHPLSTALTVKLDDKNYTLWKGMVLAVLPGQKVDGYVLRTKTCPSKY-T 76

Query: 85  VTTGTVKTLEP--NPLYEEWITVDQALCGWLFGSMTPAIAADVVSFKTSREVWKVLE 118
            TT     LEP  NP YEEW  VDQA CGWLFGSMTP+IAADVV+ +TS EVW  LE
Sbjct: 77  TTTSDTGMLEPTLNPAYEEWSAVDQAFCGWLFGSMTPSIAADVVNLQTSNEVWTALE 132

BLAST of Lag0021553 vs. NCBI nr
Match: XP_022157748.1 (uncharacterized protein LOC111024384 isoform X1 [Momordica charantia])

HSP 1 Score: 102.8 bits (255), Expect = 2.7e-18
Identity = 56/110 (50.91%), Postives = 66/110 (60.00%), Query Frame = 0

Query: 32  SSSFGHPLSTVLT----------------------KVDGYILGNKAQPSEFI--EVTTGT 91
           ++SFGHPL TVLT                      K DGY+LG  A+P +F+    T GT
Sbjct: 31  NTSFGHPLGTVLTVKLDDKNYSLWRGMVLAVLRGQKFDGYVLGTLAKPPQFLVSPETEGT 90

Query: 92  VKTLEPNPLYEEWITVDQALCGWLFGSMTPAIAADVVSFKTSREVWKVLE 118
              L+ NP Y EW  VDQAL GWLFGSMTP+IA DVV F++SREVWK LE
Sbjct: 91  SDHLQVNPEYVEWQAVDQALLGWLFGSMTPSIACDVVDFRSSREVWKALE 140

BLAST of Lag0021553 vs. NCBI nr
Match: XP_022157750.1 (uncharacterized protein LOC111024384 isoform X2 [Momordica charantia])

HSP 1 Score: 102.8 bits (255), Expect = 2.7e-18
Identity = 56/110 (50.91%), Postives = 66/110 (60.00%), Query Frame = 0

Query: 32  SSSFGHPLSTVLT----------------------KVDGYILGNKAQPSEFI--EVTTGT 91
           ++SFGHPL TVLT                      K DGY+LG  A+P +F+    T GT
Sbjct: 31  NTSFGHPLGTVLTVKLDDKNYSLWRGMVLAVLRGQKFDGYVLGTLAKPPQFLVSPETEGT 90

Query: 92  VKTLEPNPLYEEWITVDQALCGWLFGSMTPAIAADVVSFKTSREVWKVLE 118
              L+ NP Y EW  VDQAL GWLFGSMTP+IA DVV F++SREVWK LE
Sbjct: 91  SDHLQVNPEYVEWQAVDQALLGWLFGSMTPSIACDVVDFRSSREVWKALE 140

BLAST of Lag0021553 vs. NCBI nr
Match: XP_038874305.1 (uncharacterized protein LOC120067014 [Benincasa hispida])

HSP 1 Score: 86.3 bits (212), Expect = 2.6e-13
Identity = 42/77 (54.55%), Postives = 56/77 (72.73%), Query Frame = 0

Query: 45  KVDGYILGNKAQPSEFIEVTTG--TVKTLEPNPLYEEWITVDQALCGWLFGSMTPAIAAD 104
           KVDG++LG K +P+EF++ T G  T++ L  NP +EEW TVDQ L   L GSMTP+IA D
Sbjct: 10  KVDGFVLGTKPKPAEFLKSTEGGETIELLS-NPEFEEWNTVDQVLLDCLLGSMTPSIACD 69

Query: 105 VVSFKTSREVWKVLEKV 120
           V+ +K SR+VW  LEK+
Sbjct: 70  VMDYKNSRDVWTALEKL 85

BLAST of Lag0021553 vs. NCBI nr
Match: KZV34405.1 (hypothetical protein F511_34028, partial [Dorcoceras hygrometricum])

HSP 1 Score: 73.2 bits (178), Expect = 2.3e-09
Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = 0

Query: 45  KVDGYILGNKAQPSEFIEVTTGTVKTLEPNPLYEEWITVDQALCGWLFGSMTPAIAADVV 104
           K+DGY+LG K  P EF+  TT       PNP YEEW++ DQ L GWL+ +M+  IA+ ++
Sbjct: 15  KLDGYVLGTKLCPPEFLPRTTPGSTVKIPNPEYEEWLSNDQLLLGWLYSTMSSDIASQLM 74

Query: 105 SFKTSREVWKVLEKVS 121
              TS+E+W   +++S
Sbjct: 75  QKATSKELWDGAKELS 90

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022143579.17.2e-1950.43ankyrin repeat-containing protein NPR4-like [Momordica charantia][more]
XP_022157748.12.7e-1850.91uncharacterized protein LOC111024384 isoform X1 [Momordica charantia][more]
XP_022157750.12.7e-1850.91uncharacterized protein LOC111024384 isoform X2 [Momordica charantia][more]
XP_038874305.12.6e-1354.55uncharacterized protein LOC120067014 [Benincasa hispida][more]
KZV34405.12.3e-0943.42hypothetical protein F511_34028, partial [Dorcoceras hygrometricum][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0021553.1Lag0021553.1mRNA