Lag0019901 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0019901
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr5: 46570011 .. 46575396 (-)
RNA-Seq ExpressionLag0019901
SyntenyLag0019901
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTCCCTCAAAATTTCCATTGTGTTGAAACTTGTAGTTTGCTTTGCTTTGCTTCTCATTGCCTCTCCCATTTTTGCAATCGACAATGCTCCTCGTACTCGTAAGTTGTCTTTTCCATTATTGTTTAATGTCTTTCATCCCACCTCCTCATTCGTTTTTGTTTCATATATATATGTTTAGGAAGTTTGAGTTTTACATAAAGTTTGAATTTTTATAAATTTTTGTAGTCTATATTTGGTTTATGAGTTTGTTATTTGAAGAATACTAAATATAGGTTATACAAATCTACAAGTGTCAAATGTAAACGGTGGAAGCTTGAATTCTACTCATGCAAGTCTTTCTAAATGTGTATGGAGATATGAGGAACCATAAAGAAAATCAATTTCAAAATTGAACATAGCTCAATTGGTGAACACATTGTATCTTCGACCAAAATGTTTGGGAGGTTCGAATCTCTATCCCTACAAATTGTTGAACTCAAAGAACTTAAACTGTGAAAAACGAAGGAAAAACATGTGGTTCGAATCTCTATATCCCAAGCAAAATGAATTTTATTATAACAATAATGTGTGGTTTTAATTTTGCTTTTCGTAAAAAACATACCGGTATGTAGGGATTTCCTTACATACCATCATTAAAATCTTGACAACTAGGAGAGATAAAAAAGTTTTATCATTTTCTTCCTTCCTCTTTCTTAATTGTCGATTTTAATGAAGTTCCTACAGTATGTAACCAAGTTTTGTTTTCTTTTGGTAATTATATCTGTCTATATCGTCGTTCCCATTTCTTTAGCAAGAGGACGGAACGTGTTAAAGCAATAAATATCATAGATCTCAGACGAGAGGTAGATCCACGTGCGAAAAAATGTGTTATTTCATAGAAGTGAAATGATCCCCTTGTTCAATCTTTTTTTAGCGGTTTCCGTAGAGATCTTTATCATTAATACAACTTTGATTTTGTTGATTCATGGAGTTGTTTCAGGTAAGATGGGTATGGAGTACAAAAATGTTGGGAAGGATGTGGTGGTAACAAAAGCAAAGAGACCATTGTCTGCTGATGCCCCATGGGGAGGTGGATATAACATCCCTTGATGAGATTTTCAACTGATTTCAGCTCTGTTTTTCCCTTTGTGTTTAATGACTTTTTTTTTGGGAGCATTAATCTTAAAGCTAAAATAAAGTAATTGATCTACTCTTTCAATTAATTACTTTGTTTTACCCTCAATGTTTCAAGCTCTTTCTTTCTTTTTTATTGATTGAGCATGACTATATTTATTTGTCTTACTTTTTAGTTTTGAGAGAAATGCTAACTGAGTGGTCACTTTAAAAGGAATTGACTAATTTACCAAAAACAAATGAAATGAAATGCTAATTAGTGGACCAACAGAAATGAAATTTTCTGTTAACTAGATTATAAATAGCAAAATTATAAATTACATGATATTTTTTTGAGTACAAATTTTACACAATCTTTTTATATGGAGGAGTTAATTAGATTTCTTACCTCTATACTCATTATCTTTAACAACGTGTTTAACCATTTTAAAAGTGTTTTTTTTTTTTAAATTTAAAAATATGAAAATGGAATTCGAACTCCATGACCTCTTAGGTCATAACACATATTTCATGTCGGTCGAGCTATACTCTAGTTGATATTCAAAAATTAGTTTTTAACTATAAAAAGCACTCCTACTTCAAATATTTATGCCTAACAATAACTTGGAACATTTTTATTTTTAAAACATTGAGGGGGTGCTCCTCAAAAAAAGCTGGTTGATTTATATCTTTTTTGAATGACTTCATTTAGAACTTATTACTAATACATCATAACAATCTTATATCACAAAGTATTCGATCCAATACACTTTCTCTAATAACCTCACTTAAAAACAACCAACTTGAATATAACTCAGCGGATTAAAAAAAAAAAATATTTTCGATAAAAAAATAAGAGATTTGAATTTCCACATAACCAAAAAAAAAAAAAAAACACTTAAAATTCAACATGTAATGATATAGAAAGAAAAAGAAGAAAGAAACCAAAAAATATATATGGGCTGGTGGACTCCATTGACTGATTAATAACAGAAACTGACATAGACAAGTGGTAGGTAGCAAACAAGAAATCTTGTTGGGACCTAATTTTGTCCTCTTGAAAGTGAAGCTCTTTACAAGTTTGTTGGATTCATTATCTATATGCTACCAAGGTCTTTCCACTTGACTTTTCATACTCAAGCTTTTTACAAGCAGACATTAATATGGCTTTCTAGTTGCTTGCAAGAAATTAGTCTCTGATGAACTTTTATTCACACTTCATGTTGCTAATCCATGACAGACAGAGCTAACAAGTGACGGTAAAGATATCTACATATTTCAAACTTCGGGAGGGGAGGACATTGATCACGAGCTTTTCCATTCTGTCTCTAACATTGGAGGAAAATTTGTATTGTTGGATTCAGATATCTCCATAAATTAAATAAGTTTTTGAACTCTCTTTTTAGTTCAAAGTTGTTGATTTTAATGGTGTGACAATCTTAATTATTATATAAGCTTTTGTTGCACGTGATTAGATGAAATATTAAAATTAAAATGCAGAATTATAACACTGTCTTTTTAGGAGTAGTTAAATGACACATGAGCTCACACCACACATAATCATTCCTCTTCTCTCTATATCAGTGAAACAATTAATTGACAGATTTTCAAGTGTAAAATGTCAAAATGTTCTACTAGCAATCAAAGAACGACATTAGTTTTGCCTTTTGAAAATTCAGCTAAGACTTTTATCTAATTTATACCCTATTGTTTGTTTAAAATGTGGATAAACCAGTTCATTGTTGTGTTTAATTTGATTTTTATTGCGCAGACCAAGATCTCCATTAATAAAGCGGAGCCTCTAAATTTTGGATTCTAAACAACCCCTCTCCTCACTTGAAAAATTAAACTAGTGCGGTCTTATTTTTCCTGTAAAAAGTAATTGTTACAAAACTCTTTCATTAATTGAAATTGTTGTTGAGGATCTCTCATCTAAATAAACACCAAATTTTGGTGGTTATGCAATTCAATGAGAATTGTCCCACATCGAAATAAATTGAACCTACCTCCTTCCTTTATGTATTGAACTAAGATTCTTGACCATCGTCGAGCCTTGTAACACGGGCTTGTAATCCAAGTGGGGGCTTTAATGTGGTTGAAGGTTGTTTCTTTCTATTGGGCCGAGTCTTGGAAGAGTTCAACTGGTTCGCCCATTTCAAGAAAGAACATTTTTGGGGCAACTAGCTAAATGACCATTTTAAAATAGTTGATTTGAAAAAGATCCAACAACCAAATCAATAACAACCCTACAATCATGCAAATTAAATATATAGTAATTTAATGTTAAATTCAATAACATAACACAATACAATATATCGATAAAAAAAAAAAGCATACATGTTACAACTAGAATTCATCATGCAAATTGAAGAAAATGAAGGAATTTTGGCCATTTTTCATTAAAAAATACGGTTTGACCATTTTTCGAAATTACCATGTAATTTCTGGCCATTTCTGAGGATTTTCGGACATTTTTTTCTTACGTTTGTTTTTTGCTAAGAACTTTGTGGGGGGTTTTCCTTCCCCTTATTTTGCTGCTGTTTTCACCCCTATTAATTAGAAGAACATGCAAAATGTAGGAAAACAAAGCAAAGAAATTTCGGGTCAACTTTTTATTATTATTTTTTAATTTTTTTGTTTTTTGTTTTTTTTTGTTTTTTTGATCTTTTTCTTTTCTTTTCATATTTGCTGGATTTTTCTGGTTGGTATTAAATGACGATTCAAATGAAAAGTTAATCAAAAGTCTACATTGCAAACTTATATGCAAGTTCAAGTTTAAAATTGAATTAAAATTGAGATTCAATTTGATGAAATTGAAAGTTCGGAACTAAAATTGATAGATATTTTTTCTTGTTATTGAGAAGTTTATGATTTTTTTTTTGAACAGAGTGCTCGCTAACGCCCCAAACCAATACTTTTTGTTAACGAAGCAAGAAATGACATTTTTTTTCTTTTTTTTTTTCTTTTTCTTTTTTTTTTTTTAATTTTTGCTTCTATCTAAGATGAAAGCAAAACAATTTTAGAGATTTCTTCAGACGTTTGCTTCTTTTTTTTTTTATATATTTTTTTTGCTAAGAACTTTGTGGTGGGTTTTTCTTTTTCCTTATTTTGCTACTATTTTCACCCCTACTAATTAGAAGAACATGAAAAATGTAAGAAATGAAAGCGAAGAAGTTTCAGGTTTTTTTTTTTTTTTTTTTACTTTCTGTATTTTTCTTGTTGCTAATAACTTTGTGAAACTTTTTTGGAGGTTGGTTAAATGACGATCCAAATTGAAAGTTAATCAAAAGCCTACATTGCAAACTTATATGCAAATTCGAGGTTAATGTTTAGTTAAGTTTGAAATTCAATTTGATGAAATTGAAAGTTCAGGACTAAAATTGATAGAACATGCTGATCAGTTTAATTTGGGGTCAAAACTATTTTTTCCCCCTTTTCTATCACTTGTAAGTCTCTACCTACACTTTCTCTCTACGTATACGCTAACAACCTCAAACTTAAACTTTGACAATTTATAACTATCTGTCAACAAAATGTGACAGTTACGTAGAAAGAAAAAAAAAAAAAAAAGGAAGAAACCAAAATTTACACATGACTAGTCGACTCCATTGACCGACTAACACAAACTGATATAGACGAGTGGTAGGTAGAAACCAAAAAGTCTTCTTGACAAAATTACGCCAATGTTTTCCTCTTAGAAGTGAAGCCTCTTGCAAGTCTGTTTTTGGGTTATTTTTATATGCCACTAAGGTCTCTCTACTTCACACACACAACCTCAAGCTTTTTGCAACCACTAATTAATATGGCTTTTGCAATTACAGCTTATATAGTGGCATGGAAGAAAGTTGTGTTCTTTGCTTTGCTTTTCCTTGTTCTCAATGCTACTGCAAGGGAACTTGTAGCGACGAATAACACAGCTCGTAAGTTTTCTCTTTTCCGTAATGTCTTACACAACTTGTGAGTGAGGAAATTCGAACTTCTAACCTTGTATTTTCTAGGATATATGTCTTAACCAGTTGAACTGCTCAGATTGACATTTTTTCGTTTCAAAAGTACTCAAAAGAATAGTGAAATAATTGAAAACATGGAAACAATGTTGGTTTCTCAAACCCGACCCCCTAACTTCATTTTCTTTTTCAATAGGTGAGATGGATACTGTGAAAGATAGGAGATTGATTATTCAAGATCAGTTGGATCGTCCTTGGAAGGGACAATATAAATTTAAATCTCCTCCTCCTGCGCCTCGTTCACCTCCTCATTGTCCTCCTTTGCTTTCTAAGGGCAATTAG

mRNA sequence

ATGGTGTCCCTCAAAATTTCCATTGTGTTGAAACTTGTAGTTTGCTTTGCTTTGCTTCTCATTGCCTCTCCCATTTTTGCAATCGACAATGCTCCTCGTACTCGTAAGATGGGTATGGAGTACAAAAATGTTGGGAAGGATGTGGTGGTAACAAAAGCAAAGAGACCATTGTCTGCTGATGCCCCATGGGGAGCTTATATAGTGGCATGGAAGAAAGTTGTGTTCTTTGCTTTGCTTTTCCTTGTTCTCAATGCTACTGCAAGGGAACTTGTAGCGACGAATAACACAGCTCGTGAGATGGATACTGTGAAAGATAGGAGATTGATTATTCAAGATCAGTTGGATCGTCCTTGGAAGGGACAATATAAATTTAAATCTCCTCCTCCTGCGCCTCGTTCACCTCCTCATTGTCCTCCTTTGCTTTCTAAGGGCAATTAG

Coding sequence (CDS)

ATGGTGTCCCTCAAAATTTCCATTGTGTTGAAACTTGTAGTTTGCTTTGCTTTGCTTCTCATTGCCTCTCCCATTTTTGCAATCGACAATGCTCCTCGTACTCGTAAGATGGGTATGGAGTACAAAAATGTTGGGAAGGATGTGGTGGTAACAAAAGCAAAGAGACCATTGTCTGCTGATGCCCCATGGGGAGCTTATATAGTGGCATGGAAGAAAGTTGTGTTCTTTGCTTTGCTTTTCCTTGTTCTCAATGCTACTGCAAGGGAACTTGTAGCGACGAATAACACAGCTCGTGAGATGGATACTGTGAAAGATAGGAGATTGATTATTCAAGATCAGTTGGATCGTCCTTGGAAGGGACAATATAAATTTAAATCTCCTCCTCCTGCGCCTCGTTCACCTCCTCATTGTCCTCCTTTGCTTTCTAAGGGCAATTAG

Protein sequence

MVSLKISIVLKLVVCFALLLIASPIFAIDNAPRTRKMGMEYKNVGKDVVVTKAKRPLSADAPWGAYIVAWKKVVFFALLFLVLNATARELVATNNTAREMDTVKDRRLIIQDQLDRPWKGQYKFKSPPPAPRSPPHCPPLLSKGN
Homology
[Close]
BLAST of Lag0019901 vs. NCBI nr
Match: KAG6600177.1 (hypothetical protein SDJN03_05410, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.7 bits (221), Expect = 2.2e-14
Identity = 51/65 (78.46%), Postives = 54/65 (83.08%), Query Frame = 0 

Query: 1  MVSLK-ISIVLKLVVCFALLLIASPIFAIDNAPRTRKMGMEYKNVGKDVVVTKAKRPLSA 60
          MVSLK IS VLKL+VCFALLLIASPI A+DN PR RKMGMEYK VGK VVV K  R LSA
Sbjct: 1  MVSLKMISFVLKLLVCFALLLIASPISAMDNTPRIRKMGMEYKLVGKAVVVAKPVRQLSA 60

Query: 61 DAPWG 65
          D+PWG
Sbjct: 61 DSPWG 65

[Close]
BLAST of Lag0019901 vs. NCBI nr
Match: KAG7030840.1 (hypothetical protein SDJN02_04877, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 81.3 bits (199), Expect = 7.8e-12
Identity = 41/53 (77.36%), Postives = 44/53 (83.02%), Query Frame = 0 

Query: 12  LVVCFALLLIASPIFAIDNAPRTRKMGMEYKNVGKDVVVTKAKRPLSADAPWG 65
           L+VCFALLLIASPI A+DN PR RKMGMEYK VGK VVV K  R LSAD+PWG
Sbjct: 251 LLVCFALLLIASPISAMDNTPRIRKMGMEYKLVGKAVVVAKPVRQLSADSPWG 303

[Close]
BLAST of Lag0019901 vs. NCBI nr
Match: KAG6600178.1 (hypothetical protein SDJN03_05411, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-05
Identity = 41/77 (53.25%), Postives = 46/77 (59.74%), Query Frame = 0 

Query: 68  VAWKKVVFFALLFLVLNATARELVATNNTAR-----EMDTVKDRRLIIQDQLDRPWKGQY 127
           V WK+VVFFALL L  N +ARELV TN  AR      ++T   RRLI + QLD  W G Y
Sbjct: 8   VPWKEVVFFALLLLAFNVSARELVGTNIVARTVHEMTIETNVGRRLIAR-QLDTSWGGNY 67

Query: 128 KFKSPPPAPRSPPHCPP 140
              SPPP  R PP  PP
Sbjct: 68  ---SPPPPRRPPPPPPP 80

[Close]
BLAST of Lag0019901 vs. NCBI nr
Match: KAG7030841.1 (hypothetical protein SDJN02_04878 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 58.9 bits (141), Expect = 4.1e-05
Identity = 40/76 (52.63%), Postives = 45/76 (59.21%), Query Frame = 0 

Query: 68  VAWKKVVFFALLFLVLNATARELVATNNTAR-----EMDTVKDRRLIIQDQLDRPWKGQY 127
           V WK+VVFFALL L  N +ARELV TN  AR      ++T   RRLI + QLD  W G Y
Sbjct: 8   VPWKEVVFFALLLLAFNVSARELVGTNIVARTVHEMTIETNVGRRLIAR-QLDTSWGGNY 67

Query: 128 KFKSPPPAPRSPPHCP 139
              SPPP  R PP  P
Sbjct: 68  ---SPPPPRRRPPPPP 79

The following BLAST results are available for this feature:
BLAST of Lag0019901 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6600177.12.2e-1478.46hypothetical protein SDJN03_05410, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7030840.17.8e-1277.36hypothetical protein SDJN02_04877, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6600178.11.1e-0553.25hypothetical protein SDJN03_05411, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7030841.14.1e-0552.63hypothetical protein SDJN02_04878 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Lag0019901 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..145

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0019901.1Lag0019901.1mRNA