Lag0019885 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0019885
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr5: 46433479 .. 46434234 (-)
RNA-Seq Expression	Lag0019885
Synteny	Lag0019885

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCAAGAGAGTTTCAGTGATTTTGAATATGGTGTTTTTCATTGTTATGCTTTTAATGGCCTCTAATATTTCTGCGAGGAAATTTCTTGATGCTAATATCCCTGTTGGAGATGACTTGAACGTTCAAATTGGTGCATCTTCATTATTCTGTGAGTCTTTTATAACTTGTCTCTTGGATGTATTTGGCTTTGAGTAATTTGTTAACCTTGGTCAAAAAGTTGTAGCTTATATAGCTTTGCAAAAGAATAGTTTATGTAAAAACTTGTTTGTTTTTATTCAACTTTTTGGATTGAAAATTTTGGGTTCATGTTTCTATTCATTTGCAAATGAATGGGTTATAGAGACTTGTGAGCTTGTATATTCAGTAATATGTTTATAATTTTATGATCCATAGTGGTAAAAATTATGTCTTATAAGTCACATATCGGAAAAGACCTTGCTCTTGTTAAATCACCGTTCAACCCAAAAGCATAAGTTGATGAGTTACAGTAAATTTAGTACTTTAACCGTATCAAAGACGTAACATATTGTTTTTACTTATAAATATAAGATCTTTTCTGATTATAGGGTTCAAAATATTGGTTTGATGGTTGTTATATTTCAATCTTTTGAATCTCTAATTAGACTTACTTTTATCCTTTTGGTTTCAGATAAATTGGAAGGGGAGCTGGAAAAGAAATTGGAGGATTTCTTAAAACCACACACTAGCAATGATGATCCTCGAGGTGGAAACTACGAAATGGAAACATAA

mRNA sequence

ATGGCTTCCAAGAGAGTTTCAGTGATTTTGAATATGGTGTTTTTCATTGTTATGCTTTTAATGGCCTCTAATATTTCTGCGAGGAAATTTCTTGATGCTAATATCCCTGTTGGAGATGACTTGAACGTTCAAATTGGTGCATCTTCATTATTCTATAAATTGGAAGGGGAGCTGGAAAAGAAATTGGAGGATTTCTTAAAACCACACACTAGCAATGATGATCCTCGAGGTGGAAACTACGAAATGGAAACATAA

Coding sequence (CDS)

ATGGCTTCCAAGAGAGTTTCAGTGATTTTGAATATGGTGTTTTTCATTGTTATGCTTTTAATGGCCTCTAATATTTCTGCGAGGAAATTTCTTGATGCTAATATCCCTGTTGGAGATGACTTGAACGTTCAAATTGGTGCATCTTCATTATTCTATAAATTGGAAGGGGAGCTGGAAAAGAAATTGGAGGATTTCTTAAAACCACACACTAGCAATGATGATCCTCGAGGTGGAAACTACGAAATGGAAACATAA

Protein sequence

MASKRVSVILNMVFFIVMLLMASNISARKFLDANIPVGDDLNVQIGASSLFYKLEGELEKKLEDFLKPHTSNDDPRGGNYEMET

Homology

[Close]

BLAST of Lag0019885 vs. NCBI nr
Match: KAG6600181.1 (hypothetical protein SDJN03_05414, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 111.7 bits (278), Expect = 3.1e-21
Identity = 57/80 (71.25%), Postives = 63/80 (78.75%), Query Frame = 0


Query: 1  MASKRVSVILNMVFFIVMLLMASNISARKFLDANIPVGDDLNVQIGASSLFYKLEGELEK 60
          MAS  VSV    VFFI MLLMASN+S+RK LDANIPV D  NV+IGASS FY+LEGELEK
Sbjct: 1  MASTNVSVSWRAVFFIAMLLMASNVSSRKLLDANIPVEDGFNVEIGASSFFYELEGELEK 60

Query: 61 KLEDFLKPHTSNDDPRGGNY 81
          + E F+K HT ND PRGGNY
Sbjct: 61 RFESFIKSHTDNDVPRGGNY 80

[Close]

BLAST of Lag0019885 vs. NCBI nr
Match: KGN53134.1 (hypothetical protein Csa_015383 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 2.2e-19
Identity = 54/84 (64.29%), Postives = 68/84 (80.95%), Query Frame = 0


Query: 1  MASKRVSVILNMVFFIVMLLMAS----NISARKFLDANIPVGDDLNVQIGASSLFYKLEG 60
          MASKRVS+ILN+VFFI+MLL++S    N+SARKFLD N P+ D  N+Q+ ASSLFYK++G
Sbjct: 1  MASKRVSMILNVVFFIIMLLISSNNNYNVSARKFLDVNTPLDDAFNLQMDASSLFYKMKG 60

Query: 61 ELEKKLEDFLKPHTSNDDPRGGNY 81
          EL+++ ED LK  T ND PRGGNY
Sbjct: 61 ELQRRFEDLLKATTDNDIPRGGNY 84

[Close]

BLAST of Lag0019885 vs. NCBI nr
Match: KGN53135.1 (hypothetical protein Csa_014652 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 6.1e-17
Identity = 54/85 (63.53%), Postives = 66/85 (77.65%), Query Frame = 0


Query: 1  MASKRVSVILNMVFFIVMLLMAS----NISARKFLDANIPVGDD-LNVQIGASSLFYKLE 60
          MAS RVS+IL ++FFI+ML ++S    N SARKFLD N P+ DD  ++Q+GASSLFYKLE
Sbjct: 1  MASNRVSMILYVLFFIIMLSISSNNNYNASARKFLDVNFPLLDDAFDLQMGASSLFYKLE 60

Query: 61 GELEKKLEDFLKPHTSNDDPRGGNY 81
          GEL+K+ ED LK  T ND PRGGNY
Sbjct: 61 GELQKRFEDLLKTTTDNDIPRGGNY 85

[Close]

BLAST of Lag0019885 vs. NCBI nr
Match: XP_031739611.1 (uncharacterized protein LOC116403190 isoform X2 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 9.4e-10
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 28  RKFLDANIPVGDDLNVQIGASSLFYKLEGELEKKLEDFLKPHTSNDDPRGGNY 81
           +KFLD N P+ D  N+Q+ ASSLFYK++GEL+++ ED LK  T ND PRGGNY
Sbjct: 54  KKFLDVNTPLDDAFNLQMDASSLFYKMKGELQRRFEDLLKATTDNDIPRGGNY 106

The following BLAST results are available for this feature:

BLAST of Lag0019885 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600181.1	3.1e-21	71.25	hypothetical protein SDJN03_05414, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN53134.1	2.2e-19	64.29	hypothetical protein Csa_015383 [Cucumis sativus]	[more]
KGN53135.1	6.1e-17	63.53	hypothetical protein Csa_014652 [Cucumis sativus]	[more]
XP_031739611.1	9.4e-10	60.38	uncharacterized protein LOC116403190 isoform X2 [Cucumis sativus]	[more]

BLAST of Lag0019885 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0019885.1	Lag0019885.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane