Lag0019829 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0019829
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionglycine-rich cell wall structural protein 2
Locationchr5: 45886084 .. 45886578 (+)
RNA-Seq ExpressionLag0019829
SyntenyLag0019829
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAAACCATCCACATTTCATCTCCTCTTCTTTCTTCTCTTTTTCATCACACCTTCCTCCGCCGTCAGCGGCGGCTCTCGTGGCCGGAAACTGCTCAACTTTCCAGACATGTCCTGGGGACCCAACGGAGGAAATGGAGGGGGAGGTGGGAACCCCACTGGGGGCTATGGCTCTGCCCATGGTCCTAATTGGGACTACAATTGGGGTTGGGGTTCGAGCCCGGGCAGCGGTTGGGGTTACGGTTCGGGTTCTGGCCGCTCCCCGACCGGGTTCGGTAAAGGTTTTGGATATGGGTTTGGATCGGGATCCGGGTCCGGGTCAGGATATGGGTATGGAAGTGGGAGTGGTGGTGCTCATGGTGGAGGATATGGGTCCGGAAGTGGCTACGGTAATTCTGGCGGCGGTTCGGGTGGCGGCGGATACGGTGGTGGTGGCGGATACGACGAGTATCGTATGCCAACCACTACACGAGACAAAAGCAAGCACGGATAG

mRNA sequence

ATGAAAAAACCATCCACATTTCATCTCCTCTTCTTTCTTCTCTTTTTCATCACACCTTCCTCCGCCGTCAGCGGCGGCTCTCGTGGCCGGAAACTGCTCAACTTTCCAGACATGTCCTGGGGACCCAACGGAGGAAATGGAGGGGGAGGTGGGAACCCCACTGGGGGCTATGGCTCTGCCCATGGTCCTAATTGGGACTACAATTGGGGTTGGGGTTCGAGCCCGGGCAGCGGTTGGGGTTACGGTTCGGGTTCTGGCCGCTCCCCGACCGGGTTCGGTAAAGGTTTTGGATATGGGTTTGGATCGGGATCCGGGTCCGGGTCAGGATATGGGTATGGAAGTGGGAGTGGTGGTGCTCATGGTGGAGGATATGGGTCCGGAAGTGGCTACGGTAATTCTGGCGGCGGTTCGGGTGGCGGCGGATACGGTGGTGGTGGCGGATACGACGAGTATCGTATGCCAACCACTACACGAGACAAAAGCAAGCACGGATAG

Coding sequence (CDS)

ATGAAAAAACCATCCACATTTCATCTCCTCTTCTTTCTTCTCTTTTTCATCACACCTTCCTCCGCCGTCAGCGGCGGCTCTCGTGGCCGGAAACTGCTCAACTTTCCAGACATGTCCTGGGGACCCAACGGAGGAAATGGAGGGGGAGGTGGGAACCCCACTGGGGGCTATGGCTCTGCCCATGGTCCTAATTGGGACTACAATTGGGGTTGGGGTTCGAGCCCGGGCAGCGGTTGGGGTTACGGTTCGGGTTCTGGCCGCTCCCCGACCGGGTTCGGTAAAGGTTTTGGATATGGGTTTGGATCGGGATCCGGGTCCGGGTCAGGATATGGGTATGGAAGTGGGAGTGGTGGTGCTCATGGTGGAGGATATGGGTCCGGAAGTGGCTACGGTAATTCTGGCGGCGGTTCGGGTGGCGGCGGATACGGTGGTGGTGGCGGATACGACGAGTATCGTATGCCAACCACTACACGAGACAAAAGCAAGCACGGATAG

Protein sequence

MKKPSTFHLLFFLLFFITPSSAVSGGSRGRKLLNFPDMSWGPNGGNGGGGGNPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGFGYGFGSGSGSGSGYGYGSGSGGAHGGGYGSGSGYGNSGGGSGGGGYGGGGGYDEYRMPTTTRDKSKHG
Homology
BLAST of Lag0019829 vs. NCBI nr
Match: XP_016901488.1 (PREDICTED: glycine-rich cell wall structural protein 2 [Cucumis melo] >KAA0044686.1 glycine-rich cell wall structural protein 2 [Cucumis melo var. makuwa] >TYK16898.1 glycine-rich cell wall structural protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 228.0 bits (580), Expect = 5.8e-56
Identity = 136/166 (81.93%), Postives = 143/166 (86.14%), Query Frame = 0

Query: 1   MKKPSTFHL--LFFLLFFITPSSAVSGGSRGRKLLNFPDMSWGPNGGNGGGGGNPTGGYG 60
           MK+PS FHL  LFFLLF +T SS VSG +  RKLLNFPDMSWG   G GGG GNPTG YG
Sbjct: 1   MKQPSKFHLSSLFFLLFVLTSSSTVSGAATPRKLLNFPDMSWGSPNGGGGGNGNPTGAYG 60

Query: 61  SAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGFGYGFGSGSGSGSGYGYGSGSGG 120
           S H PNWDYNWGWGSSPGSGWG+GSGSGRSPTGFGKG+GYGFGSGSGSGSGYGYGSGSGG
Sbjct: 61  SGHAPNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGKGYGYGFGSGSGSGSGYGYGSGSGG 120

Query: 121 AHGGGYGSGSGYGNSGGGSGGGGYGGGGGYDEYRMPTTTRDKSKHG 165
           AHGGGYGSGSGYGNSGGG GGGGYGG  G DEYR PTTTRDK++ G
Sbjct: 121 AHGGGYGSGSGYGNSGGGGGGGGYGGPSG-DEYRSPTTTRDKNRQG 165

BLAST of Lag0019829 vs. NCBI nr
Match: XP_004146895.1 (glycine-rich cell wall structural protein 2 [Cucumis sativus] >KGN53182.1 hypothetical protein Csa_015364 [Cucumis sativus])

HSP 1 Score: 226.5 bits (576), Expect = 1.7e-55
Identity = 137/167 (82.04%), Postives = 145/167 (86.83%), Query Frame = 0

Query: 1   MKKPSTFHL--LFFLLFFITPSSAVSGGSRGRKLLNFPDMSWG-PNGGNGGGGGNPTGGY 60
           MK+PS FHL  LFFLLF +T SS VS G+  RKLLNFPDMSWG P+GG GGG GNPTG Y
Sbjct: 1   MKEPSKFHLSSLFFLLFVLTSSSTVSCGATPRKLLNFPDMSWGSPSGGGGGGNGNPTGAY 60

Query: 61  GSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGFGYGFGSGSGSGSGYGYGSGSG 120
           GS HGPNWDYNWGWGSSPGSGWG+GSGSGRSPTGFGKG+GYGFGSGSGSGSGYGYGSGSG
Sbjct: 61  GSGHGPNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGKGYGYGFGSGSGSGSGYGYGSGSG 120

Query: 121 GAHGGGYGSGSGYGNSGGGSGGGGYGGGGGYDEYRMPTTTRDKSKHG 165
           GAHGGGYGSGSGYGNSGGG  GGGYGG  G DEYR P TTRDK++ G
Sbjct: 121 GAHGGGYGSGSGYGNSGGGGSGGGYGGPSG-DEYRSPMTTRDKNRQG 166

BLAST of Lag0019829 vs. NCBI nr
Match: XP_038899364.1 (glycine-rich cell wall structural protein 2-like [Benincasa hispida])

HSP 1 Score: 218.0 bits (554), Expect = 6.0e-53
Identity = 136/166 (81.93%), Postives = 145/166 (87.35%), Query Frame = 0

Query: 1   MKKPSTFHL--LFFLLFFIT-PSSAVSGGSRGRKLLNFPDMSWG-PNGGNGGGGGNPTGG 60
           MKKPSTFHL  LFFLLF +T  SS VSG +  RKLLNFPDMSWG PNG  GGGGGNPTG 
Sbjct: 1   MKKPSTFHLLSLFFLLFVMTATSSTVSGVATARKLLNFPDMSWGSPNG--GGGGGNPTGA 60

Query: 61  YGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGFGYGFGSGSGSGSGYGYGSGS 120
           YGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKG+GYG+G GSGSGSG+GYGSGS
Sbjct: 61  YGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGYGYGYGYGSGSGSGFGYGSGS 120

Query: 121 GGAHGGGYGSGSGYGNSGGGSGGGGYGGGGGYDEYRMPTTTRDKSK 163
           GGAHGGGYGSGSGYGNSGG   GGGYGG  G +EYR PTTT+DK++
Sbjct: 121 GGAHGGGYGSGSGYGNSGGNGSGGGYGGPNG-EEYRSPTTTKDKNR 163

BLAST of Lag0019829 vs. NCBI nr
Match: XP_022141166.1 (putative glycine-rich cell wall structural protein 1 [Momordica charantia])

HSP 1 Score: 211.8 bits (538), Expect = 4.3e-51
Identity = 137/174 (78.74%), Postives = 143/174 (82.18%), Query Frame = 0

Query: 1   MKKPSTFHL-LFFLLFFITPSSAVSGGSRGRKLLNFPDMSWGPNGGNGGGGGNPTGGYGS 60
           MKK STFHL L FLLFFIT SSA S    GRKLLNFPDMSWGP+GGN  GGGNP G YGS
Sbjct: 1   MKKTSTFHLSLSFLLFFITLSSAAS----GRKLLNFPDMSWGPSGGNNNGGGNPNGNYGS 60

Query: 61  AHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGFGYGFGSGSGSGSGYGYGSGSGGA 120
           AHGPNWDYNWGWGSSPGSGWG+GSGSGRSPTGFGKG+GYGFGSGSGSGSGYGYGSGSGGA
Sbjct: 61  AHGPNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGKGYGYGFGSGSGSGSGYGYGSGSGGA 120

Query: 121 HGGGYGSGSGYGNSGGGS--------GGGGYGGGGGYDEYRMPTTTRD-KSKHG 165
            GGGYG GSGYGNS GG         GGGGYGG GG +EYR  T T+D +SKHG
Sbjct: 121 RGGGYGXGSGYGNSXGGGTGGGYXGPGGGGYGGSGG-NEYRSSTVTKDGRSKHG 169

BLAST of Lag0019829 vs. NCBI nr
Match: XP_022922583.1 (glycine-rich cell wall structural protein 2-like [Cucurbita moschata] >KAG7014856.1 hypothetical protein SDJN02_22486, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 208.4 bits (529), Expect = 4.8e-50
Identity = 136/174 (78.16%), Postives = 139/174 (79.89%), Query Frame = 0

Query: 1   MKKPSTFHL--LFFLLFFITPSSAVSGGSRGRKLLNFPDMSWG-PNGGNGGGGGNPTGGY 60
           MKKPS FHL  LFFLLFFIT SSAV     GRKLLN PDM WG PN     GGGNPTGGY
Sbjct: 1   MKKPSPFHLSPLFFLLFFITASSAV----HGRKLLNSPDMYWGSPN-----GGGNPTGGY 60

Query: 61  GSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGFGYGFGSGSGSGSGYGYGSGSG 120
           GSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKG+GYGFGSGSGSGSGYGYGSG G
Sbjct: 61  GSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGYGYGFGSGSGSGSGYGYGSGGG 120

Query: 121 GAHGGGYGSGSGYGNSGGGSGGGGYGG--GGGY-----DEYRMPTTTRDKSKHG 165
           GAHGGGYGSGSGYGNSG    GGGYGG  GGGY      EY     T+DKS+HG
Sbjct: 121 GAHGGGYGSGSGYGNSGDSGDGGGYGGSSGGGYGNSSGGEYPPSAVTKDKSRHG 165

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_016901488.15.8e-5681.93PREDICTED: glycine-rich cell wall structural protein 2 [Cucumis melo] >KAA004468... [more]
XP_004146895.11.7e-5582.04glycine-rich cell wall structural protein 2 [Cucumis sativus] >KGN53182.1 hypoth... [more]
XP_038899364.16.0e-5381.93glycine-rich cell wall structural protein 2-like [Benincasa hispida][more]
XP_022141166.14.3e-5178.74putative glycine-rich cell wall structural protein 1 [Momordica charantia][more]
XP_022922583.14.8e-5078.16glycine-rich cell wall structural protein 2-like [Cucurbita moschata] >KAG701485... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 123..164

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0019829.1Lag0019829.1mRNA