Lag0019773 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0019773
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	polyadenylate-binding protein 2-like
Location	chr5: 45286844 .. 45291188 (+)
RNA-Seq Expression	Lag0019773
Synteny	Lag0019773

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCACGAAGACGTCGACATGATTGGCTCGGAGTCCAACGATGCTGTGGTTCGTTTTCATTCCTTTTCCTCTTTCCAATCCCTTCCTATTCCATCATCAATCCACTTCTATAAACCCTAATTCCTCTCTCTCTCTCTCTCCCTTTCAGGAGTTGGACGACATGAAGAAACGCTTGAAAGAGATGGAAGATGAAGCTGCTGCCCTTCGCGAGATGCAGGCCAAGGTCGAGAAGGAAATGAGTTCCGTACAAGGTTTCTTTCTTCTCTTCTTCCCTCTTTTCCAATTCCCTTTACAATGTCCTTCACATATCCCCACCCTATTTACCATTCTCAATACTTAATTACTAGGAGGTCCACTTTTTGGGCTGGAATTGAATTGCTATTTCTTTCATTGGATATTATACGACTTGAGGATGTTAACGAAATCTGTGGTTTTGGAACAAGGGATCTCATGGAAACTAAGTTTTGAGCTTTCTATGATTGGTTCTCATCTTGATCATTAGGTGGTTGTTTCTAATTAAGAGGAGTTGGCTATTCTACTTCTTTTTGTTCTTTGAAAAAGATGCCAACTTTGGAATTTAGGAGTTTGTTCTGTGTTGATTTTCCAGTACATGTTTTTAGCCTAATTATGTACTCATAGTTGAGAAGTTCTATCATGTCTGTTGCCGTTAAATATTTCACCACTTTTTGTACTGCCAGATCCAGCTAGTGCTGCTGCAAGTCAAGCAAATAGGGAGGAAGTGGATTCTCGGTCAGTGTTTGTTGGCAATGTAAGTTCTCTTTTTCCTTTACCCATATTATTTTCTCTTTTCCCATTACCTGTCGCTTGCTTTGGTGGTCACTCTTACTACACGATTAGCTGAACAATGTCGGCTTTGTTAATGTGAGAGACTTAGCTCACCTAAAGAAGAAGGCTATTTATTTCCATTCAACGACAAACTGACTGATTCTTATCTATTTACAATATTTGACATTGGAGGTTTGTTTTTTGTGTTGGTGTAGTTATTGGTATAGAGGGCTAAACTCCAGTTTTTGTTCTTTCTTTTTTGGAATGCAGCCATCAATTTATCAACTTTAATAGCTTGTGAAGGGAAACACATTGAGTGTTATTAATTTAACCCTTTCCCCCATTTTCTTAGTTGTTTCATGTTTGAAAAAGTTTAACATTATGTCTTTACTGTTTGCACTACCTCTAATTTTTACTAGATTTGTTATTTCTAACATTTTAAGTCATTTTTGAAAGGAAGCTTAGACTTTCTATTCTTTCAATTTTCACTTATTAAATAATCTTCAGTACTTCTATAGTTATTATGGGTGCCTTTTCTTTTGTCCCAAGTATTTGATATGAAGAATGGGCAATCTTATTGCAGTATTTGACATAACCTTTTTATATTTTAATGGATCGGAGTTATCAATGATTGGAGGTAAATTGGCAAGATAAGCCACTTTTGAAGAACTATATTCTTCATTTAATAATAGAAAAAAGCTTTTTGAGCATGATTTTCTTTGAGTATTCGTTTATTTAATTCTTCACATGATTGAACTGACCGACCTTCATTCCTTGGGTTTGTTCATTTCCAGTATGGTCATAAAGGTTTCCTAAATTTCAGTTAGCCATGAGTTTTTGTTCCTTTTGGTACGTATCATTCATGTCTTTGGAAGAGGTAGGGTCATGCTTTCCATTTTGAGGACGTTGAAGCGTTGGTTGCTAGCAGTACTATTTTAGGGATGTTGGGAGGGATCATTTTATTATTGTCTATCGTTCTTCCTTTTAAGAGCTTTAAAATTAAACTACTCATGTTACATGAAATATTTTCCTCAGTGATTATTGCTATAAATTCTATCTATTTCAATTTAGATGGTTAATTTTTAAATTTTATAAATGAACAATTTCTGCACCGTGCTTGAAATTTTAGCATATTGCTGGTGTTTATAGCCTGATTTGACTCCTGTGTTTGACTGCAATTACAGGTTAGGCTTACTTCATCAGGTTTTCTGATTACCTATTGCTGAAGTCGGAAATTCTCTGATATGTTATAAAGATAGCTATCTAGTATATAAAAAAGTGTCTTGTCCCAAAAAAAGAGTAGATAAAAAACGTGATAAATTGAAGAAGGATAAGGTGTAAAATTTTCAAGATGGTAAAAGTTTGGTTGAATCTTTTGAAAAGAGAGTACGGAAGAAAAATGTTGAGATGAGTTGTCAAGAAGAAAAAATATACCTAAATGACTTGTAGCTCATGCCTTGTTGGCTTAGTGGGCGGGCTTAGATTCAGCTAACATGTCTCAAGTTTGAGGCCATGTGGGTAATGTGGAAGAGGAGTTGGTAAAAAAAGAAGAGAACAAACTCACTAGCCTAGAAAAGGGTATGTTTGACTATGGATTAAAATCAGCAGAAGTTTTACTGCTTTGCTTGATTGAACTGGAAATGATGGAGAGGGCTTGACAAGTTTTGAAGGGAAGTAATGTGCATTCACAACTAAGGAGGACTAGCTGTGGCGCCGAGGTATGTTATTGTCTTGTGTTGAAGCCAGCATTGGTGACCACGGTTCGAGGATTGTTTAAGTGATTTGCTACCTATGGTGAGGGATCCCCAAATATCTCTGATTATCCTATCTCATCCCTTACTCCATCAAGGAAAGGAAAAAACATAATTAGGGAAGCTTTTATGTTTCTATTTTTTACTTTTGGGAAATTTTAATTTTTTACCCTCATACTTAGCCCACTCAGTCAATTTTAACTTTAAAGTTTTAGTTCCATCAAATTAAACTCTCTGCTCGAATAGGTTATAAAATCAATTCCTTCCTTAATATGAAGTTAGAAAAACCAATATATTATTCAAAATCTAACCAACTAAACAACCCAAAGTACTGCTGGAAAAAACTCCCAAACGTCACCCAACTAGAAAACATCCCTGCCCAATAATAAGCAAGTATATATAGAAATAGTATTTCTCCAATCACAAGCACCCACATTTAACATTAAAACTCAAAAGAAAAAAGGGAAAAAAAAGTGACCAACTAGCAGAGGGTTTTAATTTGAATTTCTATTCAGGTTCAATTGAATGAAGTTAGAATTTTAAGATTAAATTTGACTCATTCAGCAAAGTACCTGGGTTAAATTCTGTCTTTTATTAGGAGCAATAAAATATTTCCACCTTTCCATAGATTATGTACATGAGTATGAGTTCCTTGGGTGGATTCTGTTTACTTGTTTATTTCATTGTCATTGTTGTGTGAAGAACACATACTATTATAATCATGGGTCAAAAAATTATTAGTCATCCAGGATTTTACAAGAGAACCAATATGGAGAAATTAGAGTTGCATGGTGGTTGCTTGTCTTCTCATGAATGGGTGTTGGTCTGGAATTTGAAGGGGACCTCTTGTTATGAATGATTGGGAACCCGACCTTATTTTTGTTTTTCAGGTTCTTTATAGGGTGAGTGTGTATATGATGTCCTCTGACTATCATGCATTTCGGTAAACTTCTTACATTTTATGTGAAGAAGTTAGCTGAGAGATTGTGTAGAACTTGTGGCAATATACTTGCTACTTATAATTCAATTCATAACTTAATTTCGTAAAGAAAAAAAAAATTGTTCACACAGTAATTATGAAAAATATGTGCTGCATTTTATTGATTAAAATATATTGGTGAGATTTACTTTATATTAATATTAATATAATATCAGTAATCTAATAGAAATAAACTATGCAAGCCCTATTTTACTGCATTTTTACCGGTATGACATAATTGTTTTGAGCTTCAATTGGAACAGGTTGACTACTCATGTACCCCAGAAGAAGTACAGCAACATTTCCAGTCATGTGGAACTGTAAACAGAATCACTATTCGCACTGATAAGTTTGGGCAACCGAAGGGTTATGCTTATGTTGAATTCCTTGAGCCAGAAGCTGTTCAAGAGGCTCTTCTTCTGAATGAATCAGAACTACATGGTCGACAGCTGAAGGTTAACATAATCTTTATATATATATTACTTAATTAGTGTTAGTCTAAGATTGGTCTACTGATTTTTCATGCACGTTTTTGGGCAATAATTTAATTTATAAGTATGTTGTAGGTAACTGCCAAGAGGACAAACATACCTGGGATGAAGCAGTATCGTCCACGGCGATCCAATCCATTTATGGGTGCTCGATCCAGGAGCCCATATGTTGCTCCATATTTCTTCTCACCATATGGATACGGGTATGATTATTGAATACAAGTTTCCAATGGAATCTTTCGCTCTCTTCCTAGTCATTTAGCATAGTGTTCTATATCTGTTGCAGGAAAGTCCCGAGGTTCAGAATGCCAACGCGTTACGGCCCCTACTATTGA

mRNA sequence

ATGGAGCACGAAGACGTCGACATGATTGGCTCGGAGTCCAACGATGCTGTGGAGTTGGACGACATGAAGAAACGCTTGAAAGAGATGGAAGATGAAGCTGCTGCCCTTCGCGAGATGCAGGCCAAGGTCGAGAAGGAAATGAGTTCCGTACAAGATCCAGCTAGTGCTGCTGCAAGTCAAGCAAATAGGGAGGAAGTGGATTCTCGGTCAGTGTTTGTTGGCAATGTTGACTACTCATGTACCCCAGAAGAAGTACAGCAACATTTCCAGTCATGTGGAACTGTAAACAGAATCACTATTCGCACTGATAAGTTTGGGCAACCGAAGGGTTATGCTTATGTTGAATTCCTTGAGCCAGAAGCTGTTCAAGAGGCTCTTCTTCTGAATGAATCAGAACTACATGGTCGACAGCTGAAGGTAACTGCCAAGAGGACAAACATACCTGGGATGAAGCAGTATCGTCCACGGCGATCCAATCCATTTATGGGTGCTCGATCCAGGAGCCCATATGTTGCTCCATATTTCTTCTCACCATATGGATACGGGAAAGTCCCGAGGTTCAGAATGCCAACGCGTTACGGCCCCTACTATTGA

Coding sequence (CDS)

ATGGAGCACGAAGACGTCGACATGATTGGCTCGGAGTCCAACGATGCTGTGGAGTTGGACGACATGAAGAAACGCTTGAAAGAGATGGAAGATGAAGCTGCTGCCCTTCGCGAGATGCAGGCCAAGGTCGAGAAGGAAATGAGTTCCGTACAAGATCCAGCTAGTGCTGCTGCAAGTCAAGCAAATAGGGAGGAAGTGGATTCTCGGTCAGTGTTTGTTGGCAATGTTGACTACTCATGTACCCCAGAAGAAGTACAGCAACATTTCCAGTCATGTGGAACTGTAAACAGAATCACTATTCGCACTGATAAGTTTGGGCAACCGAAGGGTTATGCTTATGTTGAATTCCTTGAGCCAGAAGCTGTTCAAGAGGCTCTTCTTCTGAATGAATCAGAACTACATGGTCGACAGCTGAAGGTAACTGCCAAGAGGACAAACATACCTGGGATGAAGCAGTATCGTCCACGGCGATCCAATCCATTTATGGGTGCTCGATCCAGGAGCCCATATGTTGCTCCATATTTCTTCTCACCATATGGATACGGGAAAGTCCCGAGGTTCAGAATGCCAACGCGTTACGGCCCCTACTATTGA

Protein sequence

MEHEDVDMIGSESNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGKVPRFRMPTRYGPYY

Homology

[Close]

BLAST of Lag0019773 vs. NCBI nr
Match: XP_022140995.1 (polyadenylate-binding protein 2-like isoform X1 [Momordica charantia])

HSP 1 Score: 386.0 bits (990), Expect = 2.0e-103
Identity = 195/197 (98.98%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MEHEDVDMIGSESNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60
           MEHED+DMIGSESNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQ
Sbjct: 1   MEHEDIDMIGSESNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60

Query: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFLEPE 120
           ANREEVD+RSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFLEPE
Sbjct: 61  ANREEVDARSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFLEPE 120

Query: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG 180
           AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG
Sbjct: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG 180

Query: 181 YGKVPRFRMPTRYGPYY 198
           YGKVPRFRMPTRYGPYY
Sbjct: 181 YGKVPRFRMPTRYGPYY 197

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BLAST of Lag0019773 vs. NCBI nr
Match: XP_038877304.1 (polyadenylate-binding protein 2-like [Benincasa hispida])

HSP 1 Score: 381.7 bits (979), Expect = 3.8e-102
Identity = 192/197 (97.46%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MEHEDVDMIGSESNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60
           MEH+DVDMIGS++NDAVELDDMKKRLK+MEDEAAALREMQAKVEKEMSSVQDPASAAASQ
Sbjct: 1   MEHDDVDMIGSDTNDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60

Query: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFLEPE 120
           ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEF+EPE
Sbjct: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE 120

Query: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG 180
           AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG
Sbjct: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG 180

Query: 181 YGKVPRFRMPTRYGPYY 198
           YGKVPRFRMPTRYGPYY
Sbjct: 181 YGKVPRFRMPTRYGPYY 197

[Close]

BLAST of Lag0019773 vs. NCBI nr
Match: XP_011653388.1 (polyadenylate-binding protein 2 isoform X3 [Cucumis sativus] >KGN53719.1 hypothetical protein Csa_015373 [Cucumis sativus])

HSP 1 Score: 381.7 bits (979), Expect = 3.8e-102
Identity = 192/197 (97.46%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MEHEDVDMIGSESNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60
           MEH+DVDMIGS++NDAVELDDMKKRLK+MEDEAAALREMQAKVEKEMSSVQDPASAAASQ
Sbjct: 1   MEHDDVDMIGSDANDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60

Query: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFLEPE 120
           ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEF+EPE
Sbjct: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE 120

Query: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG 180
           AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG
Sbjct: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG 180

Query: 181 YGKVPRFRMPTRYGPYY 198
           YGKVPRFRMPTRYGPYY
Sbjct: 181 YGKVPRFRMPTRYGPYY 197

[Close]

BLAST of Lag0019773 vs. NCBI nr
Match: XP_008462875.1 (PREDICTED: polyadenylate-binding protein 2-like isoform X2 [Cucumis melo] >KAA0061167.1 polyadenylate-binding protein 2-like isoform X2 [Cucumis melo var. makuwa] >TYK29930.1 polyadenylate-binding protein 2-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 381.3 bits (978), Expect = 4.9e-102
Identity = 191/197 (96.95%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MEHEDVDMIGSESNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60
           MEH+D+DMIGS++NDAVELDDMKKRLK+MEDEAAALREMQAKVEKEMSSVQDPASAAASQ
Sbjct: 1   MEHDDIDMIGSDTNDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60

Query: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFLEPE 120
           ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEF+EPE
Sbjct: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE 120

Query: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG 180
           AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG
Sbjct: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG 180

Query: 181 YGKVPRFRMPTRYGPYY 198
           YGKVPRFRMPTRYGPYY
Sbjct: 181 YGKVPRFRMPTRYGPYY 197

[Close]

BLAST of Lag0019773 vs. NCBI nr
Match: KAG7014873.1 (Polyadenylate-binding protein 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 377.1 bits (967), Expect = 9.3e-101
Identity = 191/197 (96.95%), Postives = 194/197 (98.48%), Query Frame = 0


Query: 1   MEHEDVDMIGSESNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60
           MEHEDVDMIG E+NDA ELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQ
Sbjct: 1   MEHEDVDMIGLETNDAAELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60

Query: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFLEPE 120
           ANREEVD+RSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFLE E
Sbjct: 61  ANREEVDARSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFLETE 120

Query: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG 180
           AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNP+MGARSRSPYVAPYFFSPYG
Sbjct: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPYMGARSRSPYVAPYFFSPYG 180

Query: 181 YGKVPRFRMPTRYGPYY 198
           YGKVPRFRMPTRYGPYY
Sbjct: 181 YGKVPRFRMPTRYGPYY 197

[Close]

BLAST of Lag0019773 vs. ExPASy Swiss-Prot
Match: Q9FJN9 (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 1.7e-76
Identity = 144/192 (75.00%), Postives = 167/192 (86.98%), Query Frame = 0


Query: 5   DVDMIGSESNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQANRE 64
           D+DM  ++ +   ELD+MKKRLKEMEDEAAALREMQAKVEKEM + QDPAS AA+QA +E
Sbjct: 29  DLDMAAADDDAVKELDEMKKRLKEMEDEAAALREMQAKVEKEMGA-QDPASIAANQAGKE 88

Query: 65  EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQE 124
           EVD+RSVFVGNVDY+CTPEEVQQHFQ+CGTV+R+TI TDKFGQPKG+AYVEF+E EAVQE
Sbjct: 89  EVDARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQE 148

Query: 125 ALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGKV 184
           AL LNESELHGRQLKV  KRTN+PG+KQ+R RR NP+MG R R P+++PY +SPYGYGK 
Sbjct: 149 ALQLNESELHGRQLKVLQKRTNVPGLKQFRGRRFNPYMGYRFRRPFMSPYMYSPYGYGKA 208

Query: 185 PRFRMPTRYGPY 197
           PRFR P RY PY
Sbjct: 209 PRFRRPMRYMPY 219

[Close]

BLAST of Lag0019773 vs. ExPASy Swiss-Prot
Match: Q9LX90 (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 1.4e-75
Identity = 141/192 (73.44%), Postives = 162/192 (84.38%), Query Frame = 0


Query: 5   DVDMIGSESNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQANRE 64
           D+DM  ++ +   EL +MK+RLKEME+EAAALREMQAKVEKEM + QDPAS AA+Q  +E
Sbjct: 25  DIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQAKVEKEMGATQDPASMAANQEGKE 84

Query: 65  EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQE 124
           EVD+RSV+VGNVDY+CTPEEVQ HFQ+CGTVNR+TI  DKFGQPKG+AYVEF+E EAVQE
Sbjct: 85  EVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQE 144

Query: 125 ALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGKV 184
           AL LNESELHGRQLKV+ KRTN+PGMKQY P R NP MG R R P+V PYF+SPYGYGK 
Sbjct: 145 ALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFVPPYFYSPYGYGKA 204

Query: 185 PRFRMPTRYGPY 197
           PRFR P RY PY
Sbjct: 205 PRFRRPMRYMPY 216

[Close]

BLAST of Lag0019773 vs. ExPASy Swiss-Prot
Match: Q93VI4 (Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.6e-63
Identity = 128/187 (68.45%), Postives = 150/187 (80.21%), Query Frame = 0


Query: 10  GSESNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQANREEVDSR 69
           GS S D   L+DMKKR+KE+E+EA ALREMQAK EK+M + QDP S   S A +EEVDSR
Sbjct: 48  GSSSRD---LEDMKKRIKEIEEEAGALREMQAKAEKDMGASQDP-SGGVSAAEKEEVDSR 107

Query: 70  SVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQEALLLN 129
           S++VGNVDY+CTPEEVQQHFQSCGTVNR+TI TDKFGQPKG+AYVEF+E EAVQ +L+LN
Sbjct: 108 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILN 167

Query: 130 ESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGKVPRFRM 189
           ESELHGRQ+KV+AKRTN+PGM+Q+R  R  PF   R   P V   F+ PY YG+VPRFR 
Sbjct: 168 ESELHGRQIKVSAKRTNVPGMRQFR-GRGRPFRPMRGFMPGVP--FYPPYAYGRVPRFRR 227

Query: 190 PTRYGPY 197
           P RY PY
Sbjct: 228 PMRYRPY 227

[Close]

BLAST of Lag0019773 vs. ExPASy Swiss-Prot
Match: O14327 (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pab2 PE=1 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.6e-34
Identity = 85/163 (52.15%), Postives = 109/163 (66.87%), Query Frame = 0


Query: 18  ELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQANREEVDSRSVFVGNVD 77
           EL +MK+R+ EME EAA LR MQ +++ E  ++++         ++E +D++SV+VGNVD
Sbjct: 13  ELLEMKERVAEMEAEAAKLRAMQEQLDNETEALRN---------DKESIDAQSVYVGNVD 72

Query: 78  YSCTPEEVQQHFQSCGTVNRITIRTDKF-GQPKGYAYVEFLEPEAVQEALLLNESELHGR 137
           YS TPEE+Q HF SCG+VNR+TI  DKF G PKG+AY+EF EP  V  ALLLN S LH R
Sbjct: 73  YSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHER 132

Query: 138 QLKVTAKRTNIPGMKQYRPR-----RSNPFMGARSRSPYVAPY 175
            LKVT KRTN+PGM + R R     R     G R R+   APY
Sbjct: 133 PLKVTPKRTNVPGMSRGRGRGRGRGRGRGRGGYRGRARGFAPY 166

[Close]

BLAST of Lag0019773 vs. ExPASy Swiss-Prot
Match: Q9DDY9 (Polyadenylate-binding protein 2-A OS=Xenopus laevis OX=8355 GN=pabpn1-a PE=2 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.2e-31
Identity = 87/208 (41.83%), Postives = 125/208 (60.10%), Query Frame = 0


Query: 2   EHEDVDMIGSESNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAA---A 61
           E E  ++ G ++ +  EL+ +K R++EME+EA  L+E+Q +VEK+M+    P +A     
Sbjct: 93  EEEPGELTGDQTIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIM 152

Query: 62  SQANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKF-GQPKGYAYVEFL 121
           S   + E D+RS++VGNVDY  T EE++ HF  CG+VNR+TI  DKF G PKG+AY+EF 
Sbjct: 153 SVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFC 212

Query: 122 EPEAVQEALLLNESELHGRQLKVTAKRTNIPGMK---------QYRPRRSNPFMGARSRS 181
           + E+V+ +L L+ES   GRQ+KV  KRTN PG+          +YR R S+      SRS
Sbjct: 213 DKESVRTSLALDESLFRGRQIKVVPKRTNRPGISTTDRGFPRARYRARASS----YSSRS 272

Query: 182 PYVAPYFFSPYGYGKVPRFRMPTRYGPY 197
            + + Y   P G     R R  + Y PY
Sbjct: 273 RFYSGYTPRPRGRVYRGRARATSWYTPY 296

[Close]

BLAST of Lag0019773 vs. ExPASy TrEMBL
Match: A0A6J1CGQ3 (polyadenylate-binding protein 2-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011513 PE=4 SV=1)

HSP 1 Score: 386.0 bits (990), Expect = 9.7e-104
Identity = 195/197 (98.98%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MEHEDVDMIGSESNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60
           MEHED+DMIGSESNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQ
Sbjct: 1   MEHEDIDMIGSESNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60

Query: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFLEPE 120
           ANREEVD+RSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFLEPE
Sbjct: 61  ANREEVDARSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFLEPE 120

Query: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG 180
           AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG
Sbjct: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG 180

Query: 181 YGKVPRFRMPTRYGPYY 198
           YGKVPRFRMPTRYGPYY
Sbjct: 181 YGKVPRFRMPTRYGPYY 197

[Close]

BLAST of Lag0019773 vs. ExPASy TrEMBL
Match: A0A0A0KXZ1 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G110060 PE=4 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 1.8e-102
Identity = 192/197 (97.46%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MEHEDVDMIGSESNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60
           MEH+DVDMIGS++NDAVELDDMKKRLK+MEDEAAALREMQAKVEKEMSSVQDPASAAASQ
Sbjct: 1   MEHDDVDMIGSDANDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60

Query: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFLEPE 120
           ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEF+EPE
Sbjct: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE 120

Query: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG 180
           AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG
Sbjct: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG 180

Query: 181 YGKVPRFRMPTRYGPYY 198
           YGKVPRFRMPTRYGPYY
Sbjct: 181 YGKVPRFRMPTRYGPYY 197

[Close]

BLAST of Lag0019773 vs. ExPASy TrEMBL
Match: A0A5A7V2R3 (Polyadenylate-binding protein 2-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold652G00160 PE=4 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 2.4e-102
Identity = 191/197 (96.95%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MEHEDVDMIGSESNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60
           MEH+D+DMIGS++NDAVELDDMKKRLK+MEDEAAALREMQAKVEKEMSSVQDPASAAASQ
Sbjct: 1   MEHDDIDMIGSDTNDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60

Query: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFLEPE 120
           ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEF+EPE
Sbjct: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE 120

Query: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG 180
           AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG
Sbjct: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG 180

Query: 181 YGKVPRFRMPTRYGPYY 198
           YGKVPRFRMPTRYGPYY
Sbjct: 181 YGKVPRFRMPTRYGPYY 197

[Close]

BLAST of Lag0019773 vs. ExPASy TrEMBL
Match: A0A1S3CHX7 (polyadenylate-binding protein 2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501153 PE=4 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 2.4e-102
Identity = 191/197 (96.95%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MEHEDVDMIGSESNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60
           MEH+D+DMIGS++NDAVELDDMKKRLK+MEDEAAALREMQAKVEKEMSSVQDPASAAASQ
Sbjct: 1   MEHDDIDMIGSDTNDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60

Query: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFLEPE 120
           ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEF+EPE
Sbjct: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE 120

Query: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG 180
           AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG
Sbjct: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG 180

Query: 181 YGKVPRFRMPTRYGPYY 198
           YGKVPRFRMPTRYGPYY
Sbjct: 181 YGKVPRFRMPTRYGPYY 197

[Close]

BLAST of Lag0019773 vs. ExPASy TrEMBL
Match: A0A1S3CIE7 (polyadenylate-binding protein 2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501153 PE=4 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 1.7e-100
Identity = 191/202 (94.55%), Postives = 197/202 (97.52%), Query Frame = 0


Query: 1   MEHEDVDMIGSESNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60
           MEH+D+DMIGS++NDAVELDDMKKRLK+MEDEAAALREMQAKVEKEMSSVQDPASAAASQ
Sbjct: 1   MEHDDIDMIGSDTNDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60

Query: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFLEPE 120
           ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEF+EPE
Sbjct: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE 120

Query: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG 180
           AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG
Sbjct: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG 180

Query: 181 YG-----KVPRFRMPTRYGPYY 198
           YG     KVPRFRMPTRYGPYY
Sbjct: 181 YGSICCRKVPRFRMPTRYGPYY 202

The following BLAST results are available for this feature:

BLAST of Lag0019773 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140995.1	2.0e-103	98.98	polyadenylate-binding protein 2-like isoform X1 [Momordica charantia]	[more]
XP_038877304.1	3.8e-102	97.46	polyadenylate-binding protein 2-like [Benincasa hispida]	[more]
XP_011653388.1	3.8e-102	97.46	polyadenylate-binding protein 2 isoform X3 [Cucumis sativus] >KGN53719.1 hypothe...	[more]
XP_008462875.1	4.9e-102	96.95	PREDICTED: polyadenylate-binding protein 2-like isoform X2 [Cucumis melo] >KAA00...	[more]
KAG7014873.1	9.3e-101	96.95	Polyadenylate-binding protein 3 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Lag0019773 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJN9	1.7e-76	75.00	Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV...	[more]
Q9LX90	1.4e-75	73.44	Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV...	[more]
Q93VI4	1.6e-63	68.45	Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV...	[more]
O14327	4.6e-34	52.15	Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]
Q9DDY9	1.2e-31	41.83	Polyadenylate-binding protein 2-A OS=Xenopus laevis OX=8355 GN=pabpn1-a PE=2 SV=...	[more]

BLAST of Lag0019773 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CGQ3	9.7e-104	98.98	polyadenylate-binding protein 2-like isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A0A0KXZ1	1.8e-102	97.46	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G110060 PE=4 SV...	[more]
A0A5A7V2R3	2.4e-102	96.95	Polyadenylate-binding protein 2-like isoform X2 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3CHX7	2.4e-102	96.95	polyadenylate-binding protein 2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3CIE7	1.7e-100	94.55	polyadenylate-binding protein 2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 12..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..66
None	No IPR available	PANTHER	PTHR23236:SF79	SUBFAMILY NOT NAMED	coord: 4..193
None	No IPR available	PANTHER	PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	coord: 4..193
None	No IPR available	CDD	cd12306	RRM_II_PABPs	coord: 70..141 e-value: 2.08572E-49 score: 153.216
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 70..141 e-value: 7.7E-23 score: 91.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 71..139 e-value: 3.1E-17 score: 62.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 69..145 score: 16.960629
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 9..142 e-value: 4.6E-29 score: 103.2
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 59..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0019773.1	Lag0019773.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding