Lag0018888 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0018888
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCCHC-type domain-containing protein
Locationchr5: 35990471 .. 35991250 (+)
RNA-Seq ExpressionLag0018888
SyntenyLag0018888
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTGCATGAACAGGAAACGAGCAGAGGCTCTGGGGAATTTGATAGGCAGCTTTGAAGACGTTGACTGGGATGAAGACGACAGAAGGGGAGAAAATTCTCTGAGATTACAAGTAAAGTTAGATATCACAAAGCCGCTGAAAAGAGGGTTGATGATCAGAGTGGGTACAAAAGCCGAAGAAGCATGGGTGAAAGTAACGTATGAAAGAATGCCAGATTTTTGTTATAAATGTGGTATCATCGGACATGTTAAAGACGAATGTGAAAACCAGGTCGACCCAGAGGAAGAACATGATTATGGAGAATGGATGAGAAATATGACGACCCCGACAAGCCCGCATGTCTACAGAACTCCATCTTACAGAGCAAATTATGGATGGAACAAAGGAAGAGGCAGGGGTCGAGGAATGAGATCCTACGATTGGCGACAAACTGAACTGAACAATAGAAATCAGAAAAACGAATATCATGGGTCTACTGCCGGAGAAACTGCCGGAAAACAGGTCGGAGACATCAGGGACGACCGGAGCAAAAGCAGAACAGAAGAGACAAGGAAAAAGCTCGAATCCCATAGCAGTACTGTTCCAACGGCTAATAAAGTGTCAGAGGACAAGACAAAAGGAAAAGAAAGAGCAGGAATGTCAGAAGAACAGAGGCAAGAGAAGACTAAGGATAAAGGGAAGGAAATACTGAGTAGCCAGACAAACATCACTATCACAAGGGACCAAAACAAGGGAAATCTGAACATAAGAGGGGAGTTGGAAAAAAAAGAAACCTGA

mRNA sequence

ATGGTGTGCATGAACAGGAAACGAGCAGAGGCTCTGGGGAATTTGATAGGCAGCTTTGAAGACGTTGACTGGGATGAAGACGACAGAAGGGGAGAAAATTCTCTGAGATTACAAGTAAAGTTAGATATCACAAAGCCGCTGAAAAGAGGGTTGATGATCAGAGTGGGTACAAAAGCCGAAGAAGCATGGGTGAAAGTAACGTATGAAAGAATGCCAGATTTTTGTTATAAATGTGGTATCATCGGACATGTTAAAGACGAATGTGAAAACCAGGTCGACCCAGAGGAAGAACATGATTATGGAGAATGGATGAGAAATATGACGACCCCGACAAGCCCGCATGTCTACAGAACTCCATCTTACAGAGCAAATTATGGATGGAACAAAGGAAGAGGCAGGGGTCGAGGAATGAGATCCTACGATTGGCGACAAACTGAACTGAACAATAGAAATCAGAAAAACGAATATCATGGGTCTACTGCCGGAGAAACTGCCGGAAAACAGGTCGGAGACATCAGGGACGACCGGAGCAAAAGCAGAACAGAAGAGACAAGGAAAAAGCTCGAATCCCATAGCAGTACTGTTCCAACGGCTAATAAAGTGTCAGAGGACAAGACAAAAGGAAAAGAAAGAGCAGGAATGTCAGAAGAACAGAGGCAAGAGAAGACTAAGGATAAAGGGAAGGAAATACTGAGTAGCCAGACAAACATCACTATCACAAGGGACCAAAACAAGGGAAATCTGAACATAAGAGGGGAGTTGGAAAAAAAAGAAACCTGA

Coding sequence (CDS)

ATGGTGTGCATGAACAGGAAACGAGCAGAGGCTCTGGGGAATTTGATAGGCAGCTTTGAAGACGTTGACTGGGATGAAGACGACAGAAGGGGAGAAAATTCTCTGAGATTACAAGTAAAGTTAGATATCACAAAGCCGCTGAAAAGAGGGTTGATGATCAGAGTGGGTACAAAAGCCGAAGAAGCATGGGTGAAAGTAACGTATGAAAGAATGCCAGATTTTTGTTATAAATGTGGTATCATCGGACATGTTAAAGACGAATGTGAAAACCAGGTCGACCCAGAGGAAGAACATGATTATGGAGAATGGATGAGAAATATGACGACCCCGACAAGCCCGCATGTCTACAGAACTCCATCTTACAGAGCAAATTATGGATGGAACAAAGGAAGAGGCAGGGGTCGAGGAATGAGATCCTACGATTGGCGACAAACTGAACTGAACAATAGAAATCAGAAAAACGAATATCATGGGTCTACTGCCGGAGAAACTGCCGGAAAACAGGTCGGAGACATCAGGGACGACCGGAGCAAAAGCAGAACAGAAGAGACAAGGAAAAAGCTCGAATCCCATAGCAGTACTGTTCCAACGGCTAATAAAGTGTCAGAGGACAAGACAAAAGGAAAAGAAAGAGCAGGAATGTCAGAAGAACAGAGGCAAGAGAAGACTAAGGATAAAGGGAAGGAAATACTGAGTAGCCAGACAAACATCACTATCACAAGGGACCAAAACAAGGGAAATCTGAACATAAGAGGGGAGTTGGAAAAAAAAGAAACCTGA

Protein sequence

MVCMNRKRAEALGNLIGSFEDVDWDEDDRRGENSLRLQVKLDITKPLKRGLMIRVGTKAEEAWVKVTYERMPDFCYKCGIIGHVKDECENQVDPEEEHDYGEWMRNMTTPTSPHVYRTPSYRANYGWNKGRGRGRGMRSYDWRQTELNNRNQKNEYHGSTAGETAGKQVGDIRDDRSKSRTEETRKKLESHSSTVPTANKVSEDKTKGKERAGMSEEQRQEKTKDKGKEILSSQTNITITRDQNKGNLNIRGELEKKET
Homology
BLAST of Lag0018888 vs. NCBI nr
Match: KAE8772589.1 (hypothetical protein D1007_55405 [Hordeum vulgare])

HSP 1 Score: 101.7 bits (252), Expect = 9.9e-18
Identity = 42/102 (41.18%), Postives = 66/102 (64.71%), Query Frame = 0

Query: 4   MNRKRAEALGNLIGSFEDVDWDEDDRRGENSLRLQVKLDITKPLKRGLMIRVGTKAEEAW 63
           M+R   E +G  IG  ++V+ DED +     LR++VKL+ITKPL RG M+++  +  ++W
Sbjct: 136 MDRASGEDVGGAIGEVQEVETDEDGKAVGKYLRVKVKLNITKPLMRGSMVQIDERGRKSW 195

Query: 64  VKVTYERMPDFCYKCGIIGHVKDECENQVDPEEEHDYGEWMR 106
               YE +P+FCY CG+I HV+ EC  +V  +E+  +G W+R
Sbjct: 196 CPFAYEYLPNFCYTCGVISHVERECNTKVKKDEKAQFGRWLR 237

BLAST of Lag0018888 vs. NCBI nr
Match: XP_039815069.1 (uncharacterized protein LOC120677956 [Panicum virgatum])

HSP 1 Score: 100.5 bits (249), Expect = 2.2e-17
Identity = 57/141 (40.43%), Postives = 76/141 (53.90%), Query Frame = 0

Query: 4   MNRKRAEALGNLIGSFEDVDWDEDDRRGENSLRLQVKLDITKPLKRGLMIRVGTKAEEAW 63
           M +   EA+G  IG+F  +D DEDD      LR++V+LDI KPL RG+M+ VG + +  W
Sbjct: 111 MKKATGEAIGEEIGTFMTMDLDEDDTAVGRYLRIKVRLDIRKPLMRGVMVYVGKEDKPLW 170

Query: 64  VKVTYERMPDFCYKCGIIGHVKDECENQVDPEEEHDYGEWMRNMTTPTSPHVY-----RT 123
             V YE +PDFCY CGIIGH    CE +V+  E   + +++R M  P    V      R+
Sbjct: 171 CPVEYEYLPDFCYTCGIIGHTDKVCEVEVERGETQQFSKYLRCM--PERKRVEEGFGGRS 230

Query: 124 PSYRANYGWNKGRGRGRGMRS 140
              R    W K  G   GM S
Sbjct: 231 GGDRFVPSWRKSGGSRGGMTS 249

BLAST of Lag0018888 vs. NCBI nr
Match: KAE8782072.1 (hypothetical protein D1007_44590 [Hordeum vulgare])

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-15
Identity = 44/102 (43.14%), Postives = 58/102 (56.86%), Query Frame = 0

Query: 4   MNRKRAEALGNLIGSFEDVDWDEDDRRGENSLRLQVKLDITKPLKRGLMIRVGTKAEEAW 63
           M+R   E +G  +G+F DV+  ED      SLR++VKLDITKPL RG +I  G      W
Sbjct: 106 MDRAEREMIGEKVGAFVDVEVGEDGMAEGESLRIKVKLDITKPLMRGTVIHTGDDERVRW 165

Query: 64  VKVTYERMPDFCYKCGIIGHVKDECENQVDPEEEHDYGEWMR 106
               YE + +FCY CGIIGH +  C   +   EE  +G W+R
Sbjct: 166 CPFRYEYLREFCYICGIIGHEEKNCSVSLTKGEEKQFGSWLR 207

BLAST of Lag0018888 vs. NCBI nr
Match: XP_021656458.1 (uncharacterized protein LOC110647091 [Hevea brasiliensis])

HSP 1 Score: 94.0 bits (232), Expect = 2.1e-15
Identity = 47/108 (43.52%), Postives = 71/108 (65.74%), Query Frame = 0

Query: 3   CMNRKRAEALGNLIGSFEDVDWDEDDRRG-ENSLRLQVKLDITKPLKRGLMIR--VGTKA 62
           C ++  A+ + N+IG F  + +DEDD  G  N+LR +V + I KPL+RG++++  VGT  
Sbjct: 140 CFSKSTAKLIANMIGRF--ISFDEDDVIGWSNALRFKVAIPIDKPLRRGVLLKLMVGT-- 199

Query: 63  EEAWVKVTYERMPDFCYKCGIIGHVKDECENQVDPEEEHDYGEWMRNM 108
              W+++ YER+P FC+ CG +GHV+ EC N  + EE   YGEW+R M
Sbjct: 200 -VRWIQLRYERLPHFCFSCGYMGHVQHEC-NSFNGEEVLQYGEWLRAM 241

BLAST of Lag0018888 vs. NCBI nr
Match: CAD6257659.1 (unnamed protein product [Miscanthus lutarioriparius])

HSP 1 Score: 93.2 bits (230), Expect = 3.5e-15
Identity = 43/102 (42.16%), Postives = 60/102 (58.82%), Query Frame = 0

Query: 4   MNRKRAEALGNLIGSFEDVDWDEDDRRGENSLRLQVKLDITKPLKRGLMIRVGTKAEEAW 63
           MNR  A A+G+ +G F +VD D  D      LRL+V++DI KPL RG++  +G    + W
Sbjct: 218 MNRGAARAIGDDVGEFMEVDADGSDLAAGRDLRLKVRMDIRKPLCRGILADLGPNKGDRW 277

Query: 64  VKVTYERMPDFCYKCGIIGHVKDECENQVDPEEEHDYGEWMR 106
             +TYE  PDFCY CG+IGHV   C  ++   E+  Y   +R
Sbjct: 278 CPITYEHFPDFCYICGLIGHVDRACLKKLGKGEKAPYSRELR 319

BLAST of Lag0018888 vs. ExPASy TrEMBL
Match: A0A803P614 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.5e-16
Identity = 50/127 (39.37%), Postives = 75/127 (59.06%), Query Frame = 0

Query: 5   NRKRAEALGNLIGSFEDVDWDEDDRRGENSLRLQVKLDITKPLKRGLMIRVGTKAEEAWV 64
           +R  AEALGN+IG F +V  D  +      LR++VKL +TKPL RG MI++    +E WV
Sbjct: 142 SRFLAEALGNIIGEFLEVHDDSTNEGWGPFLRIRVKLLVTKPLMRGQMIKLPKIRDEFWV 201

Query: 65  KVTYERMPDFCYKCGIIGHVKDEC------ENQVDPEEEHDYGEWMRNMTTPTSPH-VYR 124
              YER+P+FC++CG +GH  + C       +  + +++  YG WM+    PT+ +  YR
Sbjct: 202 DFRYERLPEFCFECGCLGHPFERCVAFMERMDSGNADDDFQYGPWMKGSKLPTNGYDRYR 261

BLAST of Lag0018888 vs. ExPASy TrEMBL
Match: A0A803QHU2 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 5.9e-16
Identity = 51/126 (40.48%), Postives = 75/126 (59.52%), Query Frame = 0

Query: 5   NRKRAEALGNLIGSFEDVDWDEDDRRGENSLRLQVKLDITKPLKRGLMIRVGTKAEEAWV 64
           +R  AEALGN+IG F +V  D  +      LR++VKL +TKPL RG MI++    +E WV
Sbjct: 142 SRFLAEALGNIIGEFLEVHDDSTNEGWGPFLRIRVKLQVTKPLMRGQMIKLPKIKDEFWV 201

Query: 65  KVTYERMPDFCYKCGIIGHVKDEC---ENQVD--PEEEHDYGEWMRNMTTPTSPH-VYRT 124
              YER+P+FC++CG +GH    C     ++D   +++  YG WM+    PT+ +  YRT
Sbjct: 202 DFRYERLPEFCFECGCLGHPFKRCIAFMERMDRGNDDDFQYGPWMKGSKLPTNNYDRYRT 261

BLAST of Lag0018888 vs. ExPASy TrEMBL
Match: A0A803PJK4 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 5.9e-16
Identity = 46/108 (42.59%), Postives = 68/108 (62.96%), Query Frame = 0

Query: 12  LGNLIGSFEDVDWDEDDRRGENSLRLQVKLDITKPLKRGLMIRVGTKAEEAWVKVTYERM 71
           +G LIG++ DV  D  +      LR++V++D++KPL RG M+      +E W++  YER+
Sbjct: 103 IGGLIGNYIDVHEDSLNEGWGPFLRIRVEIDVSKPLLRGQMVAFPWIKDELWLEFRYERL 162

Query: 72  PDFCYKCGIIGHVKDECE---NQVDPEEEHD--YGEWMRNMTTPTSPH 115
           PDFCY+CGIIGHV D+C+    ++D  +E D  YG WM     P SP+
Sbjct: 163 PDFCYECGIIGHVFDKCQVYLEKIDDGKEPDLAYGPWMEGSPLPKSPY 210

BLAST of Lag0018888 vs. ExPASy TrEMBL
Match: A0A803Q6Y1 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-15
Identity = 49/122 (40.16%), Postives = 75/122 (61.48%), Query Frame = 0

Query: 9    AEALGNLIGSFEDVDWDEDDRRGENSLRLQVKLDITKPLKRGLMIRVGTKAEEAWVKVTY 68
            AEALGN IG F DV  D  ++     LR+++K+ +TK L RG MIR+ +  +E W+   Y
Sbjct: 1818 AEALGNTIGEFIDVFEDSTNKGWGPFLRVRIKICVTKSLLRGQMIRLPSIKDEFWIDYRY 1877

Query: 69   ERMPDFCYKCGIIGHVKDEC---ENQVDPEEEHD--YGEWMRNMTTPTSPH-VYRTPSYR 125
            ER+P+FC++CGI+GH  ++C     ++D   + D  YG W++    PT+ +  YRT   +
Sbjct: 1878 ERLPEFCFECGILGHPYEQCVAFMERMDNGNDDDLPYGPWLKGARLPTNSYDRYRTDFSK 1937

BLAST of Lag0018888 vs. ExPASy TrEMBL
Match: A0A803Q028 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-15
Identity = 47/111 (42.34%), Postives = 67/111 (60.36%), Query Frame = 0

Query: 9   AEALGNLIGSFEDVDWDEDDRRGENSLRLQVKLDITKPLKRGLMIRVGTKAEEAWVKVTY 68
           A  LGNLIG+F +V  D  +      LR++V +D++KPL RG M+     A++ W+   Y
Sbjct: 129 ARTLGNLIGTFIEVFEDSLNEGWGLFLRIRVGIDVSKPLLRGQMVTFPWMADDLWLDYRY 188

Query: 69  ERMPDFCYKCGIIGHVKDECE---NQVDPEEEHD--YGEWMRNMTTPTSPH 115
           ER+PDFCY+CGI+GHV D+C     ++D  +E D  YG WM     P S +
Sbjct: 189 ERLPDFCYECGIVGHVFDKCALFMEKIDEGKEPDLSYGPWMEGSALPKSAY 239

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8772589.19.9e-1841.18hypothetical protein D1007_55405 [Hordeum vulgare][more]
XP_039815069.12.2e-1740.43uncharacterized protein LOC120677956 [Panicum virgatum][more]
KAE8782072.11.2e-1543.14hypothetical protein D1007_44590 [Hordeum vulgare][more]
XP_021656458.12.1e-1543.52uncharacterized protein LOC110647091 [Hevea brasiliensis][more]
CAD6257659.13.5e-1542.16unnamed protein product [Miscanthus lutarioriparius][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A803P6144.5e-1639.37Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803QHU25.9e-1640.48Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803PJK45.9e-1642.59Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803Q6Y11.3e-1540.16Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803Q0281.3e-1542.34Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025836Zinc knuckle CX2CX4HX4CPFAMPF14392zf-CCHC_4coord: 41..89
e-value: 1.1E-15
score: 57.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 168..190
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 230..247
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 202..229
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 148..259
NoneNo IPR availablePANTHERPTHR31286:SF62SUBFAMILY NOT NAMEDcoord: 2..250
IPR040256Uncharacterized protein At4g02000-likePANTHERPTHR31286GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKEcoord: 2..250
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 75..90
score: 9.454925

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0018888.1Lag0018888.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding