Lag0018629 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0018629
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionPentraxin 4, long
Locationchr5: 31207097 .. 31207681 (-)
RNA-Seq ExpressionLag0018629
SyntenyLag0018629
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACACAGTGCTTGAAGAGAGACTCGGAAACTTCTTAGGCCTCCCCAAGCTTTTTCCCCAGAACAGTGTATACACCCCTGGGACGAATACGACGCTTGAAAAGAGGCTCGGGAACTTCCTAGGCCTCCCCAAGCTTTTTCCCCAGAAGAGTGTACGCACCCCTGGGATGAACATAGTGCTTGAAGAGAGGCTCGGGAACTTCCTAGGCCTCCTCAAGCTTTTTCCCCAGAAGAGTGTACGCACCCCTGGGACGAACACGACGCTTGAAGAGAGGCTCGGGAACTTCCTAGGCCTCCCCAAGCTTTTTCCCCAGAAGAGTGTATGCACCCCTGGGATGAACACGACGCTTGAAGAGAGGCTCGGAAACTTCCTAGTCCTCCCCAAGCTTTTTCCCCAGAAGAGTGTACGCACCCCTAGGATGAACACAGTGCTTGAAGAGAGGCTCGAGAACTTCCTAGGCCTCCCCAAGCTTTTTCCCCAGAAGAGTGTACGCGCCCCTAGGAGGACGGCGATGCTTGAAAAAAGTCTTTGGGGCTTCCTGGGCCTCTCCAAATTTCTCCAGGCGGTGCAGCAAGGATGCTAG

mRNA sequence

ATGAACACAGTGCTTGAAGAGAGACTCGGAAACTTCTTAGGCCTCCCCAAGCTTTTTCCCCAGAACAGTGTATACACCCCTGGGACGAATACGACGCTTGAAAAGAGGCTCGGGAACTTCCTAGGCCTCCCCAAGCTTTTTCCCCAGAAGAGTGTACGCACCCCTGGGATGAACATAGTGCTTGAAGAGAGGCTCGGGAACTTCCTAGGCCTCCTCAAGCTTTTTCCCCAGAAGAGTGTACGCACCCCTGGGACGAACACGACGCTTGAAGAGAGGCTCGGGAACTTCCTAGGCCTCCCCAAGCTTTTTCCCCAGAAGAGTGTATGCACCCCTGGGATGAACACGACGCTTGAAGAGAGGCTCGGAAACTTCCTAGTCCTCCCCAAGCTTTTTCCCCAGAAGAGTGTACGCACCCCTAGGATGAACACAGTGCTTGAAGAGAGGCTCGAGAACTTCCTAGGCCTCCCCAAGCTTTTTCCCCAGAAGAGTGTACGCGCCCCTAGGAGGACGGCGATGCTTGAAAAAAGTCTTTGGGGCTTCCTGGGCCTCTCCAAATTTCTCCAGGCGGTGCAGCAAGGATGCTAG

Coding sequence (CDS)

ATGAACACAGTGCTTGAAGAGAGACTCGGAAACTTCTTAGGCCTCCCCAAGCTTTTTCCCCAGAACAGTGTATACACCCCTGGGACGAATACGACGCTTGAAAAGAGGCTCGGGAACTTCCTAGGCCTCCCCAAGCTTTTTCCCCAGAAGAGTGTACGCACCCCTGGGATGAACATAGTGCTTGAAGAGAGGCTCGGGAACTTCCTAGGCCTCCTCAAGCTTTTTCCCCAGAAGAGTGTACGCACCCCTGGGACGAACACGACGCTTGAAGAGAGGCTCGGGAACTTCCTAGGCCTCCCCAAGCTTTTTCCCCAGAAGAGTGTATGCACCCCTGGGATGAACACGACGCTTGAAGAGAGGCTCGGAAACTTCCTAGTCCTCCCCAAGCTTTTTCCCCAGAAGAGTGTACGCACCCCTAGGATGAACACAGTGCTTGAAGAGAGGCTCGAGAACTTCCTAGGCCTCCCCAAGCTTTTTCCCCAGAAGAGTGTACGCGCCCCTAGGAGGACGGCGATGCTTGAAAAAAGTCTTTGGGGCTTCCTGGGCCTCTCCAAATTTCTCCAGGCGGTGCAGCAAGGATGCTAG

Protein sequence

MNTVLEERLGNFLGLPKLFPQNSVYTPGTNTTLEKRLGNFLGLPKLFPQKSVRTPGMNIVLEERLGNFLGLLKLFPQKSVRTPGTNTTLEERLGNFLGLPKLFPQKSVCTPGMNTTLEERLGNFLVLPKLFPQKSVRTPRMNTVLEERLENFLGLPKLFPQKSVRAPRRTAMLEKSLWGFLGLSKFLQAVQQGC
Homology
BLAST of Lag0018629 vs. NCBI nr
Match: XP_032924805.1 (proline-rich protein 36-like [Catharus ustulatus])

HSP 1 Score: 70.9 bits (172), Expect = 1.4e-08
Identity = 41/150 (27.33%), Postives = 58/150 (38.67%), Query Frame = 0

Query: 18  LFPQNSVYTPGTNTTLEKRLGNFLGLPKLFPQKSVRTPGMNIVLEERLGNFLGLLKLFPQ 77
           + P+NS+ TP T T L +          + P+ S+ TP    VL E          + P 
Sbjct: 553 VLPENSITTPSTTTVLPENSITTPSTTTVLPENSITTPSTTTVLPENSITTPSTTTVLPD 612

Query: 78  KSVRTPGTNTTLEERLGNFLGLPKLFPQKSVCTPGMNTTLEERLGNFLVLPKLFPQKSVR 137
            S+ TP T T L E          + P  S+ TP   T L E          + P+ S+ 
Sbjct: 613 NSITTPSTTTVLPENSITTPSTTTVLPDNSITTPSTTTVLPENSITTPSTTTVLPENSIT 672

Query: 138 TPRMNTVLEERLENFLGLPKLFPQKSVRAP 168
           TP   TVL E          + P+ S+  P
Sbjct: 673 TPSTATVLPENSITTPSTATVLPKVSITTP 702

BLAST of Lag0018629 vs. NCBI nr
Match: WP_171268814.1 (glycosyltransferase [Aeromonas media] >QJT30051.1 glycosyltransferase [Aeromonas media])

HSP 1 Score: 63.2 bits (152), Expect = 2.9e-06
Identity = 38/173 (21.97%), Postives = 69/173 (39.88%), Query Frame = 0

Query: 5   LEERLGNFLGLPKLFPQNSVYTPGTNTTLEKRLGNFLGLPKLFPQKSVRTPGMNIVLEER 64
           L+ER G   GL     +      G    + +R G   GL +   ++     G+N  + ER
Sbjct: 312 LKERDGEIAGLKHAISERDGAIVGLTQAIVERDGEITGLNQAIAERDGEITGLNQAIAER 371

Query: 65  LGNFLGLLKLFPQKSVRTPGTNTTLEERLGNFLGLPKLFPQKSVCTPGMNTTLEERLGNF 124
            G   GL +   ++     G N  + ER G   GL +   ++     G+N  + ER G  
Sbjct: 372 DGEITGLNQAIAERDGEITGLNQAIAERDGEITGLNQTIVERDGEITGLNQAIVERDGEI 431

Query: 125 LVLPKLFPQKSVRTPRMNTVLEERLENFLGLPKLFPQKSVRAPRRTAMLEKSL 178
           + L +   ++      +N  + ER     GL     ++ ++   +   ++K L
Sbjct: 432 VGLNQAIAERDGEIAGLNQAIAERDGEIAGLNHAIVERDLQLDEKNTTIDKLL 484

BLAST of Lag0018629 vs. NCBI nr
Match: WP_053484569.1 (hypothetical protein [Lysinibacillus sp. FJAT-14745] >KOP77966.1 hypothetical protein AMS59_15140 [Lysinibacillus sp. FJAT-14745])

HSP 1 Score: 62.8 bits (151), Expect = 3.8e-06
Identity = 48/150 (32.00%), Postives = 66/150 (44.00%), Query Frame = 0

Query: 40  FLGLPKLFPQKSVRTPGMNIVLEERLGNFLGLLKLFPQKSVRTPGTNTTLEERLGNFLGL 99
           FLGLP  F     R PG    L ER   FLGL + FP    R+ G      +    FLGL
Sbjct: 23  FLGLPDQFFGLPERFPG----LPER---FLGLPEQFPDLPERSLGLPKQFPDLPERFLGL 82

Query: 100 PKLFPQKSVCTPGMNTTLEERLGNFLVLPKLFPQKSVRTPRMNTVLEERLENFLGLPKLF 159
           P+ FP       G+     +    FL LP+ FP    R   +     +  E FLGLP+ F
Sbjct: 83  PEQFPDLPERFLGLPEQFPDLPERFLGLPEQFPDLPERFLGLPEQFPDLPERFLGLPEQF 142

Query: 160 PQKSVRAPRRTAMLEKSLWGFLGLSKFLQA 190
           P    + P  + +L+ +L+     + F+ A
Sbjct: 143 PDLPEQFPYLSKLLKTALFSAQNKNLFIYA 165

BLAST of Lag0018629 vs. NCBI nr
Match: XP_014053877.1 (PREDICTED: uncharacterized protein LOC106604057 isoform X1 [Salmo salar])

HSP 1 Score: 57.0 bits (136), Expect = 2.1e-04
Identity = 41/181 (22.65%), Postives = 78/181 (43.09%), Query Frame = 0

Query: 3   TVLEERLGNFLGLPKLFPQNSVYTPGTNTTLEKRLGNFLGLPKLFPQKSVRTPGMNIVLE 62
           T++ +++G  LGL  +         G  T +  ++G  LGL  +   K     G+  ++ 
Sbjct: 53  TMVTDKVGGVLGLLTMVTDKVGGVLGLVTMVTDKVGGVLGLLTMVTDKVGGVLGLVTMVT 112

Query: 63  ERLGNFLGLLKLFPQKSVRTPGTNTTLEERLGNFLGLPKLFPQKSVCTPGMNTTLEERLG 122
           +++G  LGLL +   K     G  T + +++G  LGL  +         G+ T + +++G
Sbjct: 113 DKVGGVLGLLTMVTDKVGGVLGLVTMVTDKVGGVLGLVTMVTDMVGGVLGLLTMVTDKVG 172

Query: 123 NFLVLPKLFPQKSVRTPRMNTVLEERLENFLGLPKLFPQKSVRAPRRTAMLEKSLWGFLG 182
             L L  +   K      + T++ +++   LGL  +   K         M+   + G LG
Sbjct: 173 GVLGLVTMVTDKVGGVLGLLTMVTDKVGGVLGLVTMVTDKVGGVLGLVTMVTDMVGGVLG 232

Query: 183 L 184
           L
Sbjct: 233 L 233

BLAST of Lag0018629 vs. NCBI nr
Match: XP_014053879.1 (PREDICTED: uncharacterized protein LOC106604057 isoform X3 [Salmo salar])

HSP 1 Score: 56.6 bits (135), Expect = 2.7e-04
Identity = 41/181 (22.65%), Postives = 78/181 (43.09%), Query Frame = 0

Query: 3   TVLEERLGNFLGLPKLFPQNSVYTPGTNTTLEKRLGNFLGLPKLFPQKSVRTPGMNIVLE 62
           T++ +++G  LGL  +         G  T +  ++G  LGL  +   K     G+  ++ 
Sbjct: 25  TMVTDKVGGVLGLLTMVTDKVGGVLGLVTMVTDKVGGVLGLLTMVTDKVGGVLGLVTMVT 84

Query: 63  ERLGNFLGLLKLFPQKSVRTPGTNTTLEERLGNFLGLPKLFPQKSVCTPGMNTTLEERLG 122
           +++G  LGLL +   K     G  T + +++G  LGL  +   K     G+ T + +++G
Sbjct: 85  DKVGGVLGLLTMVTDKVGGVLGLVTMVTDKVGGVLGLLTMVTDKVGGVLGLVTMVTDKVG 144

Query: 123 NFLVLPKLFPQKSVRTPRMNTVLEERLENFLGLPKLFPQKSVRAPRRTAMLEKSLWGFLG 182
             L L  +          + T++ +++   LGL  +   K         M+   + G LG
Sbjct: 145 GVLGLVTMVTDMVGGVLGLLTMVTDKVGGVLGLLTMVTDKVGGVLGLVTMVTDKVGGVLG 204

Query: 183 L 184
           L
Sbjct: 205 L 205

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_032924805.11.4e-0827.33proline-rich protein 36-like [Catharus ustulatus][more]
WP_171268814.12.9e-0621.97glycosyltransferase [Aeromonas media] >QJT30051.1 glycosyltransferase [Aeromonas... [more]
WP_053484569.13.8e-0632.00hypothetical protein [Lysinibacillus sp. FJAT-14745] >KOP77966.1 hypothetical pr... [more]
XP_014053877.12.1e-0422.65PREDICTED: uncharacterized protein LOC106604057 isoform X1 [Salmo salar][more]
XP_014053879.12.7e-0422.65PREDICTED: uncharacterized protein LOC106604057 isoform X3 [Salmo salar][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0018629.1Lag0018629.1mRNA