Lag0018497 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0018497
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr5: 28348390 .. 28349008 (+)
RNA-Seq ExpressionLag0018497
SyntenyLag0018497
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGAGGTCTTCCTCCGCCATCCGACAAAGAATGCAACAAATGTACAGAGCCTGTTTGGTTGTAAAATTGGCAATTGGCCGACCAGCTATCTAGGCGCCCTTAATGGCAACCCGAGAAAGGACAACTTCTGGACTCCAGTTATCGAGAAAATGCAGAAAAGGTTGCACAATTGGGGATCCTCCAACATATCTAAAGGTGGAAGACACACCCTTATCCAAGCTACCCTTTCGAACCTCCTTATTTATTACCTATTCTTGTTTCTAGCCCCCAAAAAGGTTACAAAGGCCATCGAAAAAATGTACAGAGCCTTTTTATGGAGAGGAGGGATTGAGAAAAAAGGAAGTCATCTTCTAAAATGGTTTGTGGTCCCGTATTCAAACCCCAATTGAGGTAGGCGGATTGGGTATTTATGACATACACAAAAAGAACGTCTCCCTTTTGGCCAAATGGACACGAAGATTCTACAGCGACCAGAAGGCATTATGGAGGAGGTTCATTGCCACCAAATATGGAGTGGCCAAAAACCGAACAAGTTGGGAAAACACTCCATTAGTTCCTCAAAGGACTCATGGAGATCCATCTAAAAGATGCAACACCTCATTTACAACTCCATAG

mRNA sequence

ATGATCGAGGTCTTCCTCCGCCATCCGACAAAGAATGCAACAAATGTACAGAGCCTGTTTGGTTGTAAAATTGGCAATTGGCCGACCAGCTATCTAGGCGCCCTTAATGGCAACCCGAGAAAGGACAACTTCTGGACTCCAGTTATCGAGAAAATGCAGAAAAGGTTGCACAATTGGGGATCCTCCAACATATCTAAAGGCGGATTGGGTATTTATGACATACACAAAAAGAACGTCTCCCTTTTGGCCAAATGGACACGAAGATTCTACAGCGACCAGAAGGCATTATGGAGGAGGTTCATTGCCACCAAATATGGAGTGGCCAAAAACCGAACAAGTTGGGAAAACACTCCATTAGTTCCTCAAAGGACTCATGGAGATCCATCTAAAAGATGCAACACCTCATTTACAACTCCATAG

Coding sequence (CDS)

ATGATCGAGGTCTTCCTCCGCCATCCGACAAAGAATGCAACAAATGTACAGAGCCTGTTTGGTTGTAAAATTGGCAATTGGCCGACCAGCTATCTAGGCGCCCTTAATGGCAACCCGAGAAAGGACAACTTCTGGACTCCAGTTATCGAGAAAATGCAGAAAAGGTTGCACAATTGGGGATCCTCCAACATATCTAAAGGCGGATTGGGTATTTATGACATACACAAAAAGAACGTCTCCCTTTTGGCCAAATGGACACGAAGATTCTACAGCGACCAGAAGGCATTATGGAGGAGGTTCATTGCCACCAAATATGGAGTGGCCAAAAACCGAACAAGTTGGGAAAACACTCCATTAGTTCCTCAAAGGACTCATGGAGATCCATCTAAAAGATGCAACACCTCATTTACAACTCCATAG

Protein sequence

MIEVFLRHPTKNATNVQSLFGCKIGNWPTSYLGALNGNPRKDNFWTPVIEKMQKRLHNWGSSNISKGGLGIYDIHKKNVSLLAKWTRRFYSDQKALWRRFIATKYGVAKNRTSWENTPLVPQRTHGDPSKRCNTSFTTP
Homology
BLAST of Lag0018497 vs. NCBI nr
Match: MCH85507.1 (LINE-1 reverse transcriptase like [Trifolium medium])

HSP 1 Score: 81.6 bits (200), Expect = 5.7e-12
Identity = 40/109 (36.70%), Postives = 61/109 (55.96%), Query Frame = 0

Query: 22  CKIGNWPTSYLG-ALNGNPRKDNFWTPVIEKMQKRLHNWGSSNIS----------KGGLG 81
           CKIG+ P  YLG  +  NPR+ + W PV+E +QKRL +W +  +S          +GGLG
Sbjct: 340 CKIGSLPFIYLGLPVGANPRRVSTWNPVLEVLQKRLASWKNKYVSLGGRVVLLNLEGGLG 399

Query: 82  IYDIHKKNVSLLAKWTRRFYSDQKALWRRFIATKYGVAKNRTSWENTPL 120
           + D+   N+SLL KW  R  S+  ++W+  +  KYG  ++   W +  L
Sbjct: 400 VKDLRIMNISLLTKWKWRLLSEGDSIWKNVLRDKYGGEESGVVWVSRAL 448

BLAST of Lag0018497 vs. NCBI nr
Match: GEY28602.1 (nucleotide-binding alpha-beta plait domain-containing protein [Tanacetum cinerariifolium])

HSP 1 Score: 80.9 bits (198), Expect = 9.7e-12
Identity = 43/119 (36.13%), Postives = 64/119 (53.78%), Query Frame = 0

Query: 11  KNATNVQSLFGCKIGNWPTSYLGA-LNGNPRKDNFWTPVIEKMQKRLHNWGSSNIS---K 70
           +N  +  S  GC + N P SYLG  + GN  +   WT V++K++ RL NW   ++S   K
Sbjct: 859 ENVKSAASKLGCLLLNTPFSYLGTKVGGNMSRVQAWTEVVDKIKSRLSNWKMKSLSIGEK 918

Query: 71  GGLGIYDIHKKNVSLLAKWTRRFYSDQKALWRRFIATKYG---------VAKNRTSWEN 117
            GLG+  ++  N +L+ KW  RFYS +++LW R I   YG          A +R+ W N
Sbjct: 919 EGLGVSSLYALNRALMMKWVWRFYSQKESLWARVIKAIYGDDGQVGKASRAGSRSCWRN 977

BLAST of Lag0018497 vs. NCBI nr
Match: RVW47872.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 80.1 bits (196), Expect = 1.7e-11
Identity = 39/106 (36.79%), Postives = 59/106 (55.66%), Query Frame = 0

Query: 19  LFGCKIGNWPTSYLG-ALNGNPRKDNFWTPVIEKMQKRLHNWGSSNIS---KGGLGIYDI 78
           +  CK  NWP  YLG  L GN +   FW PVIE++ +RL     + +S   K G+G+++ 
Sbjct: 333 MLDCKASNWPILYLGLPLRGNLKACGFWDPVIERISRRLDELQKAYLSFGGKRGIGVWED 392

Query: 79  HKKNVSLLAKWTRRFYSDQKALWRRFIATKYGVAKNRTSWENTPLV 121
             +N++LL KW RR+  +  ALW + I + YG   N   W+   +V
Sbjct: 393 FSRNLTLLGKWLRRYPRESSALWHQIILSIYGTHSN--GWDVNTIV 436

BLAST of Lag0018497 vs. NCBI nr
Match: CAN75375.1 (hypothetical protein VITISV_029153 [Vitis vinifera])

HSP 1 Score: 79.7 bits (195), Expect = 2.2e-11
Identity = 39/106 (36.79%), Postives = 59/106 (55.66%), Query Frame = 0

Query: 19  LFGCKIGNWPTSYLG-ALNGNPRKDNFWTPVIEKMQKRLHNWGSSNIS---KGGLGIYDI 78
           +  CK  NWP  YLG  L GN +   FW PVIE++ +RL     + +S   K G+G+++ 
Sbjct: 380 MLDCKASNWPILYLGLPLRGNLKACXFWDPVIERISRRLDELQKAYLSFGGKRGIGVWED 439

Query: 79  HKKNVSLLAKWTRRFYSDQKALWRRFIATKYGVAKNRTSWENTPLV 121
             +N++LL KW RR+  +  ALW + I + YG   N   W+   +V
Sbjct: 440 FSRNLTLLGKWLRRYPRESSALWHQIILSIYGTHSN--GWDVNTIV 483

BLAST of Lag0018497 vs. NCBI nr
Match: RVX22481.1 (hypothetical protein CK203_012567 [Vitis vinifera])

HSP 1 Score: 79.3 bits (194), Expect = 2.8e-11
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = 0

Query: 18  SLFGCKIGNWPTSYLGALNGNPRKD-NFWTPVIEKMQKRLHNWGSSNISKG-GLGIYDIH 77
           S+ GCKIG+ PTSYLG   G P K    W  V E+ +KRL  W    +SKG GLGI  + 
Sbjct: 77  SVLGCKIGSLPTSYLGLPLGAPYKSTRVWDAVEERFRKRLSLWKRQYLSKGRGLGIRSLS 136

Query: 78  KKNVSLLAKWTRRFYSDQKALWRRFIATKY 106
             N +LL KW  RF ++ ++LW++ I++KY
Sbjct: 137 TFNKALLGKWLWRFANENESLWKQIISSKY 166

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
MCH85507.15.7e-1236.70LINE-1 reverse transcriptase like [Trifolium medium][more]
GEY28602.19.7e-1236.13nucleotide-binding alpha-beta plait domain-containing protein [Tanacetum cinerar... [more]
RVW47872.11.7e-1136.79Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera][more]
CAN75375.12.2e-1136.79hypothetical protein VITISV_029153 [Vitis vinifera][more]
RVX22481.12.8e-1145.56hypothetical protein CK203_012567 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 117..139
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..22
score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0018497.1Lag0018497.1mRNA