Lag0018428 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0018428
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionzf-RVT domain-containing protein
Locationchr5: 26849839 .. 26850318 (-)
RNA-Seq ExpressionLag0018428
SyntenyLag0018428
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATACCTCCCCCAAAAATCTTTGGAAAAAAGTTGTGGGATATCAAGATTATTCCTAGAGCTAAGATTTGTGTCTGGAAAGTTATCAATGATGTGATCCCCTGTAAGGCTAATGTTATTGAAAGAGGGATGGATGTTAACTCGCTGTGTGTTTTGTGCAAGTGCAAGGAAGAGACCTCCACTCATGTGGTGTGGCATTGTAAGTGCTCTAGGAGTATTTGGTTGACATTCCTCCCTAACTTGGAATGTCTGTTTTCTGTATGCAGGGAAGGTTGGAGGTCGATAGATTGGTGGGAAGGAATGTTGTCCATTCTATGAGAAGAGGAGAGAAGAAAAACAACAATTATCATATGAAAGAATTGGTCTTATCGTAACAAAATTTTAAAAGCAAGAGTAGCAGCAAACAAAGGGCAGATGGGTAGATCAATTGAGGCCAACATTAAGGAGCAAGATGCAAGAGAGATTAGTGATGCTACCTAG

mRNA sequence

ATGATACCTCCCCCAAAAATCTTTGGAAAAAAGTTGTGGGATATCAAGATTATTCCTAGAGCTAAGATTTGTGTCTGGAAAGTTATCAATGATGTGATCCCCTGTAAGGCTAATGTTATTGAAAGAGGGATGGATGTTAACTCGCTGTGTGTTTTGTGCAAGTGCAAGGAAGAGACCTCCACTCATGTGGTGTGGCATTCAAGAGTAGCAGCAAACAAAGGGCAGATGGGTAGATCAATTGAGGCCAACATTAAGGAGCAAGATGCAAGAGAGATTAGTGATGCTACCTAG

Coding sequence (CDS)

ATGATACCTCCCCCAAAAATCTTTGGAAAAAAGTTGTGGGATATCAAGATTATTCCTAGAGCTAAGATTTGTGTCTGGAAAGTTATCAATGATGTGATCCCCTGTAAGGCTAATGTTATTGAAAGAGGGATGGATGTTAACTCGCTGTGTGTTTTGTGCAAGTGCAAGGAAGAGACCTCCACTCATGTGGTGTGGCATTCAAGAGTAGCAGCAAACAAAGGGCAGATGGGTAGATCAATTGAGGCCAACATTAAGGAGCAAGATGCAAGAGAGATTAGTGATGCTACCTAG

Protein sequence

MIPPPKIFGKKLWDIKIIPRAKICVWKVINDVIPCKANVIERGMDVNSLCVLCKCKEETSTHVVWHSRVAANKGQMGRSIEANIKEQDAREISDAT
Homology
BLAST of Lag0018428 vs. NCBI nr
Match: KAG6721291.1 (hypothetical protein I3842_03G106200 [Carya illinoinensis])

HSP 1 Score: 65.5 bits (158), Expect = 2.9e-07
Identity = 26/56 (46.43%), Postives = 40/56 (71.43%), Query Frame = 0

Query: 10  KKLWDIKIIPRAKICVWKVINDVIPCKANVIERGMDVNSLCVLCKCKEETSTHVVW 66
           KK+W +K+ P  KI +WKV N+ IP  AN+ +R +  +S C++CK + ETS+HV+W
Sbjct: 288 KKIWQLKVAPAVKIFIWKVCNEAIPTLANLKKRRVVEDSSCIVCKSEPETSSHVLW 343

BLAST of Lag0018428 vs. NCBI nr
Match: XP_021851943.1 (uncharacterized protein LOC110791500 [Spinacia oleracea])

HSP 1 Score: 61.6 bits (148), Expect = 4.2e-06
Identity = 25/60 (41.67%), Postives = 40/60 (66.67%), Query Frame = 0

Query: 4   PPKIFGKKLWDIKIIPRAKICVWKVINDVIPCKANVIERGMDVNSLCVLCKCKEETSTHV 63
           PP I+ K  W + I+P+ KI +WK+++D +P  A +  RGMDV+ +C LC  +EE  +H+
Sbjct: 612 PPDIWWKHFWGLSILPKFKIFLWKMLHDGLPLGAKIRLRGMDVDPMCSLCHSEEEVPSHL 671

BLAST of Lag0018428 vs. NCBI nr
Match: XP_030931246.1 (uncharacterized protein LOC115957168 [Quercus lobata])

HSP 1 Score: 60.8 bits (146), Expect = 7.2e-06
Identity = 23/61 (37.70%), Postives = 40/61 (65.57%), Query Frame = 0

Query: 10   KKLWDIKIIPRAKICVWKVINDVIPCKANVIERGMDVNSLCVLCKCKEETSTHVVWHSRV 69
            +K+W + I  + K+ VW+  + ++P +AN++++ +  +S CVLCKC  ET  HV+W   V
Sbjct: 1003 RKIWQMHIPNKIKVFVWRACHGILPTRANLLQKHVVEDSTCVLCKCTSETELHVLWECGV 1062

Query: 70   A 71
            A
Sbjct: 1063 A 1063

BLAST of Lag0018428 vs. NCBI nr
Match: KAF4400725.1 (hypothetical protein G4B88_001280 [Cannabis sativa])

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-05
Identity = 23/56 (41.07%), Postives = 37/56 (66.07%), Query Frame = 0

Query: 10  KKLWDIKIIPRAKICVWKVINDVIPCKANVIERGMDVNSLCVLCKCKEETSTHVVW 66
           K +W +++ PR K+  W+V ++ +P K N+  RGMD+N+ C +C   EET TH +W
Sbjct: 69  KMIWSLQLPPRMKLFSWRVCHNWLPAKTNLKHRGMDINTCCDMCVRYEETLTHALW 124

BLAST of Lag0018428 vs. NCBI nr
Match: XP_024155813.1 (uncharacterized protein LOC112163786 [Rosa chinensis])

HSP 1 Score: 58.9 bits (141), Expect = 2.7e-05
Identity = 22/63 (34.92%), Postives = 39/63 (61.90%), Query Frame = 0

Query: 8   FGKKLWDIKIIPRAKICVWKVINDVIPCKANVIERGMDVNSLCVLCKCKEETSTHVVWHS 67
           F KK W  K+  + K+C+WK   D +P ++N++++ M+V   C LC+ +EET  H+  + 
Sbjct: 849 FWKKFWKCKVPGKVKLCLWKACQDFLPTRSNLVKKKMEVELFCPLCENEEETPLHIFRYC 908

Query: 68  RVA 71
            +A
Sbjct: 909 PIA 911

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6721291.12.9e-0746.43hypothetical protein I3842_03G106200 [Carya illinoinensis][more]
XP_021851943.14.2e-0641.67uncharacterized protein LOC110791500 [Spinacia oleracea][more]
XP_030931246.17.2e-0637.70uncharacterized protein LOC115957168 [Quercus lobata][more]
KAF4400725.11.2e-0541.07hypothetical protein G4B88_001280 [Cannabis sativa][more]
XP_024155813.12.7e-0534.92uncharacterized protein LOC112163786 [Rosa chinensis][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 92..96
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 10..70
e-value: 1.8E-12
score: 47.8

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0018428.1Lag0018428.1mRNA