Lag0018154 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0018154
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRibonuclease H
Locationchr5: 17558320 .. 17558901 (-)
RNA-Seq ExpressionLag0018154
SyntenyLag0018154
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAGGTGTTACCTCTTCCATCGAGACCATGGACATTCAATCATGAATTGCATTCAATTGGAGGATGAAATTGAAGCATTGATTCGTAATGGATACCTGAAGGAGTTCGTCACTAATGAAGACCAGTCCAGCCCGAGGCCGACCAGAGATGACCGAGGTCAAGGGCGTGATGAACCCCCTCGAGAGATCTGAACCATCTTTGAGGACCAACTGGAGGAGATTCAAGTAGAAAAAGAAAAGTCATGGCCAGAGAGTCAAGGTTCGAGCCAGAACACTGTATTTTGTCCATATCTAGCAAAGGCACATCCCCATTTGGATATCACTGAGGCTGAGGCAGCAAACATCCACCAACCACACAATGATGCTTTGGTTGGCACTCTAATGGTAGCCAATGCTAAAATCTATCGGATCCTAATCGATAGAGGAAGGTCGACTGATGTTCTTTCTCTAATGACCTTTGAGGCAATGAAGTTGGGGAGAGAACTCTTGAAACCAAGCCTTACACCACTTGTAGGGTTTGAAGGAGAACAAGTGACACCCAAAGGTAGCATAGAACTCCCTATGACCTTTAGGGATTGA

mRNA sequence

ATGAACAGGTGTTACCTCTTCCATCGAGACCATGGACATTCAATCATGAATTGCATTCAATTGGAGGATGAAATTGAAGCATTGATTCGTAATGGATACCTGAAGGAGTTCGTCACTAATGAAGACCAGTCCAGCCCGAGGCCGACCAGAGATGACCGAGCAAAGGCACATCCCCATTTGGATATCACTGAGGCTGAGGCAGCAAACATCCACCAACCACACAATGATGCTTTGGTTGGCACTCTAATGGTAGCCAATGCTAAAATCTATCGGATCCTAATCGATAGAGGAAGGTCGACTGATGTTCTTTCTCTAATGACCTTTGAGGCAATGAAGTTGGGGAGAGAACTCTTGAAACCAAGCCTTACACCACTTGTAGGGTTTGAAGGAGAACAAGTGACACCCAAAGGTAGCATAGAACTCCCTATGACCTTTAGGGATTGA

Coding sequence (CDS)

ATGAACAGGTGTTACCTCTTCCATCGAGACCATGGACATTCAATCATGAATTGCATTCAATTGGAGGATGAAATTGAAGCATTGATTCGTAATGGATACCTGAAGGAGTTCGTCACTAATGAAGACCAGTCCAGCCCGAGGCCGACCAGAGATGACCGAGCAAAGGCACATCCCCATTTGGATATCACTGAGGCTGAGGCAGCAAACATCCACCAACCACACAATGATGCTTTGGTTGGCACTCTAATGGTAGCCAATGCTAAAATCTATCGGATCCTAATCGATAGAGGAAGGTCGACTGATGTTCTTTCTCTAATGACCTTTGAGGCAATGAAGTTGGGGAGAGAACTCTTGAAACCAAGCCTTACACCACTTGTAGGGTTTGAAGGAGAACAAGTGACACCCAAAGGTAGCATAGAACTCCCTATGACCTTTAGGGATTGA

Protein sequence

MNRCYLFHRDHGHSIMNCIQLEDEIEALIRNGYLKEFVTNEDQSSPRPTRDDRAKAHPHLDITEAEAANIHQPHNDALVGTLMVANAKIYRILIDRGRSTDVLSLMTFEAMKLGRELLKPSLTPLVGFEGEQVTPKGSIELPMTFRD
Homology
BLAST of Lag0018154 vs. NCBI nr
Match: XP_022155873.1 (uncharacterized protein LOC111022886 [Momordica charantia])

HSP 1 Score: 143.7 bits (361), Expect = 1.3e-30
Identity = 74/150 (49.33%), Postives = 101/150 (67.33%), Query Frame = 0

Query: 5   YLFHRDHGHSIMNCIQLEDEIEALIRNGYLKEFV------TNEDQSSPRPTRDDRA---K 64
           +LFHRDHGH+  +C  L++E+E LIR+GYLKE+V       N +  S  P R+ R    +
Sbjct: 44  WLFHRDHGHATQDCFDLKEEVEGLIRSGYLKEYVEDPKATQNGENDSNSPVREIRTIMEE 103

Query: 65  AHPHLDITEAEAANIHQPHNDALVGTLMVANAKIYRILIDRGRSTDVLSLMTFEAMKLGR 124
               L+ +E EA ++  PHNDALV TL +ANAK++RIL+D G ST ++SL  ++AM LG 
Sbjct: 104 QPAKLEFSEDEATHLFHPHNDALVITLKIANAKVHRILVDGGSSTYIISLTAYKAMDLGE 163

Query: 125 ELLKPSLTPLVGFEGEQVTPKGSIELPMTF 146
           + LK S  PLVGF GE+V P+G IELP+ F
Sbjct: 164 KALKSSPVPLVGFGGERVIPEGRIELPVMF 193

BLAST of Lag0018154 vs. NCBI nr
Match: XP_022138036.1 (uncharacterized protein LOC111009292 [Momordica charantia])

HSP 1 Score: 129.8 bits (325), Expect = 1.9e-26
Identity = 68/143 (47.55%), Postives = 98/143 (68.53%), Query Frame = 0

Query: 3   RCYLFHRDHGHSIMNCIQLEDEIEALIRNGYLKEFVTNEDQSSPRPTRDDRAKAHPHLDI 62
           R  LFH DHGH+  +C  L++E+E LIR GYLKE++  ED  + +   +D  K    ++ 
Sbjct: 26  RYCLFHLDHGHATQDCFDLKEEVEGLIRRGYLKEYM--EDPKATQNGEND--KQSTKIEF 85

Query: 63  TEAEAANIHQPHNDALVGTLMVANAKIYRILIDRGRSTDVLSLMTFEAMKLGRELLKPSL 122
           ++ EA ++  PHNDALV TL +ANAK+++IL+D G S +++SL  ++AM LG  +LK S 
Sbjct: 86  SKDEATHLLHPHNDALVITLKIANAKVHQILVDGGSSANIISLAAYKAMDLG-VVLKSST 145

Query: 123 TPLVGFEGEQVTPKGSIELPMTF 146
            PLVGF GE+V P+G IEL +TF
Sbjct: 146 APLVGFGGERVIPEGRIELSVTF 163

BLAST of Lag0018154 vs. NCBI nr
Match: XP_022156748.1 (uncharacterized protein LOC111023587 [Momordica charantia])

HSP 1 Score: 124.4 bits (311), Expect = 8.1e-25
Identity = 68/154 (44.16%), Postives = 92/154 (59.74%), Query Frame = 0

Query: 3   RCYLFHRDHGHSIMNCIQLEDEIEALIRNGYLKEFVTNE----DQSSPRPTRDDRAKAHP 62
           R  LFHRDH H+  +C  L++E+E LIR GYLKE    E    D    R  R+     H 
Sbjct: 39  RYCLFHRDHDHATQDCFDLKEEVEGLIRRGYLKEERIWEKKKADVREARANREQNEVYHA 98

Query: 63  H-------LDITEAEAANIHQPHNDALVGTLMVANAKIYRILIDRGRSTDVLSLMTFEAM 122
           +       ++ +E EA  +   HNDALV TL +AN K++RIL+D G S D++S   ++AM
Sbjct: 99  YITDRPVTIEFSEDEATQLFHSHNDALVITLKIANVKVHRILVDGGSSADIISWTAYKAM 158

Query: 123 KLGRELLKPSLTPLVGFEGEQVTPKGSIELPMTF 146
            L  ++LK S  PLVGF GE+V  +G IELP+TF
Sbjct: 159 DLEEKVLKSSPAPLVGFGGERVISEGRIELPVTF 192

BLAST of Lag0018154 vs. NCBI nr
Match: XP_022150858.1 (uncharacterized protein LOC111018902 [Momordica charantia])

HSP 1 Score: 123.6 bits (309), Expect = 1.4e-24
Identity = 66/148 (44.59%), Postives = 91/148 (61.49%), Query Frame = 0

Query: 7   FHRDHGHSIMNCIQLEDEIEALIRNGYLKEFVTNEDQSSPRPTRDDRAKAHPH------- 66
           FH DH H+  +C  L++E+E LI+ GYLKE+V  +D  + +  R+ +A    H       
Sbjct: 38  FHLDHSHATQDCFDLKEEVEGLIQRGYLKEYV--KDPKATQNKRERQAYKIYHAFVEEQP 97

Query: 67  --LDITEAEAANIHQPHNDALVGTLMVANAKIYRILIDRGRSTDVLSLMTFEAMKLGREL 126
             ++  E E  +I  PHNDALV  L +ANAK++ IL+D G S D++SL  ++ M LG   
Sbjct: 98  TKIEFLEDEVTHIFHPHNDALVINLKIANAKVHWILVDGGSSPDIISLTAYKTMDLGERG 157

Query: 127 LKPSLTPLVGFEGEQVTPKGSIELPMTF 146
           LK S  PLVGF GE V P+G IELP+TF
Sbjct: 158 LKSSPAPLVGFGGEWVIPEGRIELPVTF 183

BLAST of Lag0018154 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 123.2 bits (308), Expect = 1.8e-24
Identity = 70/184 (38.04%), Postives = 98/184 (53.26%), Query Frame = 0

Query: 3   RCYLFHRDHGHSIMNCIQLEDEIEALIRNGYLKEFV-------TNEDQSSP--------- 62
           R  LFHRDHGH+  +C  L++E+E LIR GYLKE+V         E   SP         
Sbjct: 436 RYCLFHRDHGHATQDCFDLKEEVEGLIRRGYLKEYVEEPKATQNGESDKSPAREIRTIMG 495

Query: 63  ------------------RPTRDDRAKAHPH-------LDITEAEAANIHQPHNDALVGT 122
                             R +R+     H +       ++ +E EA ++  PHNDALV  
Sbjct: 496 GPIERESGRKRKADVREARTSREQNEVYHAYTTNRPVTIEFSEDEATHLLHPHNDALVIX 555

Query: 123 LMVANAKIYRILIDRGRSTDVLSLMTFEAMKLGRELLKPSLTPLVGFEGEQVTPKGSIEL 146
           L +AN K++R+L+D G S D++S   ++AM L  ++LK S  PLVGF  E+V P+G IEL
Sbjct: 556 LKIANVKVHRVLVDGGSSADIJSWTAYKAMDLXEKVLKXSPAPLVGFGXERVIPEGRIEL 615

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022155873.11.3e-3049.33uncharacterized protein LOC111022886 [Momordica charantia][more]
XP_022138036.11.9e-2647.55uncharacterized protein LOC111009292 [Momordica charantia][more]
XP_022156748.18.1e-2544.16uncharacterized protein LOC111023587 [Momordica charantia][more]
XP_022150858.11.4e-2444.59uncharacterized protein LOC111018902 [Momordica charantia][more]
XP_022158830.11.8e-2438.04uncharacterized protein LOC111025293 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0018154.1Lag0018154.1mRNA