Lag0017976 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0017976
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRNase H domain-containing protein
Locationchr5: 12433011 .. 12433316 (+)
RNA-Seq ExpressionLag0017976
SyntenyLag0017976
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGACTCAGAAGGGATGTCCTAGGTGTAAGGTTAAGGAAGAGATGTCATTCCATGCCATATGGGAGTGCAAAACGGTGAAACAACATTGGCAAAAATCGCCATTTTATCTGCAGCCAGGTCCTAATACCATTCACTGTGTTGCAGATCTACTGTGGTGGTGTTGGATGCATATGTCATGTTCCCAATTTGAGGAGTTTGTGGTGTTGTCTTGGTGGATTTGGAATAGGAGAAATAAGGAGCTCTTTGGTGGGAGTCATAGCTTGGAGTTGGAGGATGGGGGGTGGGGATGGGTTGCAAAGTAG

mRNA sequence

ATGGTGACTCAGAAGGGATGTCCTAGGTGTAAGGTTAAGGAAGAGATGTCATTCCATGCCATATGGGAGTGCAAAACGGTGAAACAACATTGGCAAAAATCGCCATTTTATCTGCAGCCAGGTCCTAATACCATTCACTGTGTTGCAGATCTACTGTGGTGGTGTTGGATGCATATGTCATGTTCCCAATTTGAGGAGTTTGTGGTGTTGTCTTGGTGGATTTGGAATAGGAGAAATAAGGAGCTCTTTGGTGGGAGTCATAGCTTGGAGTTGGAGGATGGGGGGTGGGGATGGGTTGCAAAGTAG

Coding sequence (CDS)

ATGGTGACTCAGAAGGGATGTCCTAGGTGTAAGGTTAAGGAAGAGATGTCATTCCATGCCATATGGGAGTGCAAAACGGTGAAACAACATTGGCAAAAATCGCCATTTTATCTGCAGCCAGGTCCTAATACCATTCACTGTGTTGCAGATCTACTGTGGTGGTGTTGGATGCATATGTCATGTTCCCAATTTGAGGAGTTTGTGGTGTTGTCTTGGTGGATTTGGAATAGGAGAAATAAGGAGCTCTTTGGTGGGAGTCATAGCTTGGAGTTGGAGGATGGGGGGTGGGGATGGGTTGCAAAGTAG

Protein sequence

MVTQKGCPRCKVKEEMSFHAIWECKTVKQHWQKSPFYLQPGPNTIHCVADLLWWCWMHMSCSQFEEFVVLSWWIWNRRNKELFGGSHSLELEDGGWGWVAK
Homology
BLAST of Lag0017976 vs. NCBI nr
Match: KAF4361839.1 (hypothetical protein F8388_003160 [Cannabis sativa] >KAF4400337.1 hypothetical protein G4B88_018679 [Cannabis sativa])

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-07
Identity = 31/77 (40.26%), Postives = 42/77 (54.55%), Query Frame = 0

Query: 7   CPRCKVKEEMSFHAIWECKTVKQHWQKSPFYLQPGPNTIHCVADLLWWCWMHMSCSQFEE 66
           C  C  +EE   HA+W C  V++ W K   Y +    ++H  +  LWW W H+S  +F  
Sbjct: 30  CDGCMQQEEDICHALWCCPKVQKIW-KQLGYSKFKDQSVHNASAFLWWQWEHLSKEEFIR 89

Query: 67  FVVLSWWIWNRRNKELF 84
           FV  SW IW RRNK +F
Sbjct: 90  FVGFSWLIWQRRNKYIF 105

BLAST of Lag0017976 vs. NCBI nr
Match: KAF4385381.1 (hypothetical protein G4B88_005713 [Cannabis sativa])

HSP 1 Score: 65.9 bits (159), Expect = 2.4e-07
Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 0

Query: 13  KEEMSFHAIWECKTVKQHWQKSPFYLQPGPNTIHCVADLLWWCWMHMSCSQFEEFVVLSW 72
           +EE   HA+W C TV++ W++   Y +    TIH  ++ LWW W H+S  +F  FV  +W
Sbjct: 97  QEENITHALWCCPTVQKTWKRLG-YSKLKDCTIHSASEFLWWQWEHLSKEEFIRFVGFTW 156

Query: 73  WIWNRRNKELF 84
            IW RRN+ +F
Sbjct: 157 LIWQRRNQFVF 166

BLAST of Lag0017976 vs. NCBI nr
Match: KAF4394884.1 (hypothetical protein G4B88_002761 [Cannabis sativa])

HSP 1 Score: 65.1 bits (157), Expect = 4.0e-07
Identity = 30/83 (36.14%), Postives = 43/83 (51.81%), Query Frame = 0

Query: 1   MVTQKGCPRCKVKEEMSFHAIWECKTVKQHWQKSPFYLQPGPNTIHCVADLLWWCWMHMS 60
           M     C  C  +EE   HA+W C  V++ W++  +      NT H  ++ LWW W H++
Sbjct: 565 MSLDANCDWCLQQEEDICHALWCCPKVQKLWKQLGYSKFKDQNT-HNASNFLWWQWEHLT 624

Query: 61  CSQFEEFVVLSWWIWNRRNKELF 84
             +F  FV  SW IW RRN  +F
Sbjct: 625 KEEFFRFVGFSWLIWQRRNNYIF 646

BLAST of Lag0017976 vs. NCBI nr
Match: XP_023915286.1 (uncharacterized protein LOC112026812 [Quercus suber])

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-06
Identity = 32/86 (37.21%), Postives = 44/86 (51.16%), Query Frame = 0

Query: 1   MVTQKGCPRCKVKEEMSFHAIWECKTVKQHWQK-SPFYLQPGPNTIHCVADLLWWCWMHM 60
           +V  + CP CK+  +   HA+WECK  +  W   S   LQ G      +  L    W  M
Sbjct: 780 IVENELCPICKLVPKTILHALWECKAAQDVWAGCSQRVLQKGLTVQSSMLQLTEDMWHKM 839

Query: 61  SCSQFEEFVVLSWWIWNRRNKELFGG 86
               FE F+VL W +W+RRN+ +FGG
Sbjct: 840 PLDVFEFFLVLCWLLWHRRNRVVFGG 865

BLAST of Lag0017976 vs. NCBI nr
Match: KAF4400621.1 (hypothetical protein G4B88_023029 [Cannabis sativa])

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-06
Identity = 30/79 (37.97%), Postives = 43/79 (54.43%), Query Frame = 0

Query: 5   KGCPRCKVKEEMSFHAIWECKTVKQHWQKSPFYLQPGPNTIHCVADLLWWCWMHMSCSQF 64
           KG    K +EE   HA+W C  V++ W++  +      NT H  ++ LWW W H++  +F
Sbjct: 343 KGGTGSKEQEEDICHALWCCPKVQKLWKQLGYSKFKDQNT-HNASNFLWWQWEHLTKEEF 402

Query: 65  EEFVVLSWWIWNRRNKELF 84
             FV  SW IW RRN  +F
Sbjct: 403 FRFVGFSWLIWQRRNNYIF 420

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAF4361839.11.1e-0740.26hypothetical protein F8388_003160 [Cannabis sativa] >KAF4400337.1 hypothetical p... [more]
KAF4385381.12.4e-0740.85hypothetical protein G4B88_005713 [Cannabis sativa][more]
KAF4394884.14.0e-0736.14hypothetical protein G4B88_002761 [Cannabis sativa][more]
XP_023915286.11.5e-0637.21uncharacterized protein LOC112026812 [Quercus suber][more]
KAF4400621.11.5e-0637.97hypothetical protein G4B88_023029 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0017976.1Lag0017976.1mRNA