Lag0017923 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0017923
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr5: 11740313 .. 11741596 (-)
RNA-Seq ExpressionLag0017923
SyntenyLag0017923
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCGATCCTCCTAGAGTGAGATTCGAACTAGATCCAGAAATTGAAAGGACATTCAGAAGGAGAAGGAGGGAGCAGCGAAGGAACATCAATCCAATGGATGACCCTCTACATCTTCCAGATATTCCAGAAGATCAAGTTGATCCCCAGCAAAATTGTGTGTTGCAGCAAAATCAATTGCTGGAGTAAAATGGACAGCAAAATAACCAGGCTGAGAACCCTATTTTGGTAGCGAATGATAGGACCAGAGCCATTCAAGCGTATGCTTTCCCGATGTTTGATGAGTTAAATCCAGGAATTGTGCGTCCTCAAATTGAGGCAGCAAATTTTGAAATAAAATCGATAATGTTTCAGATGTTACAGACCGTGGGTCAATTCCATGGTTTACCATATGAAGACCCCCATTTACATCTTAAGTCTTTTCTAGGAGTTAGTTATTCATTTGTGATTCAGGGAGTGTCAAGAGAATCAGCATCGAGTCATGACTGCAACATCAGTTGTCGTCGTGACGAAGTTACCTTGGTATGCAGTTATAAGGAAGTGCCAACGGTGGTATTAGTGTCATCTCGTAGCTATTCTTGAAGGGATGGTTTGAAAAGGTGAGTTGGCGCAGCGGAAGCCGTTTCGAAGTAGTTGTTTCCATCTTCAGTGATGCCTGTTTGAAGTTGGTGGTTGAACTTACCAACTAAGTGGGTTTAAGTTGGTGAAGTTGCTGATGAAGCTTCCTGTAGGTTGGAGTTGTGTTAAGTCGTTGATGCTAAGTTGTAAAGTGTTTAGCTCAAGGTTTAAGCTGGCATTGACAACCTATGTGGAGTAAGTAGCATCAGCGAATAGAAGTTTCTTGTAGGTCGTGCAAGATCGGAGTTTGGATTCAATCTTGATAGGCCGTTTGAATTCTTGGAGTGTGTAGTCAGGTTGCTCGTAAGCAAGATTTGCTTCAAGTGTTGTATGTTCAACATGACTTGTCTCAAGAGTTGTGGTTATGCATACACATCACCTATTCCTCTTGTGCCTCAGTTTTAAGCTTTGGGATCCTAGAGGAAATGGTTCGGTGAGCAAAAGCCTCTGGTATTAAGTTTGTGGAGCATGAGTTGGAATCAAGGCCAGTCCACCAGTGTGGTTAGGCAAGCACTTTCGAGAATTTGGAGTTCAGTGTTGGTGATCGTGTGTTTTGCACGTGATGTCAATGAAAAGACTTCTTTGCTTGTTGATAGGAAGCTTAACCTGGGTTCATTGGACGAGATGAGATCAGGGAGCGCATCGAGCCTGTTGCTTACAGGTTGA

mRNA sequence

ATGAGCGATCCTCCTAGAGTGAGATTCGAACTAGATCCAGAAATTGAAAGGACATTCAGAAGGAGAAGGAGGGAGCAGCGAAGGAACATCAATCCAATGGATGACCCTCTACATCTTCCAGATATTCCAGAAGATCAAGTTGATCCCCAGCAAAATTCGAATGATAGGACCAGAGCCATTCAAGCGTATGCTTTCCCGATGTTTGATGAGTTAAATCCAGGAATTGTGCGTCCTCAAATTGAGGCAGCAAATTTTGAAATAAAATCGATAATGTTTCAGATGTTACAGACCGTGGGTCAATTCCATGGTTTACCATATGAAGACCCCCATTTACATCTTAAGTCTTTTCTAGGAGTTAGTTATTCATTTGTGATTCAGGGAGTGTCAAGAGAATCAGCATCGAGTCATGACTGCAACATCAGTTGTCGTCGTGACGAAGTTACCTTGTTGCTGATGAAGCTTCCTGTAGGTTGGAGTTGTGTTAAGTCGTTGATGCTAAGTTGTAAAGTGTTTAGCTCAAGGTTTAAGCTGGCATTGACAACCTATGTGGATCAGGTTGCTCGTAAGCAAGATTTGCTTCAAGTGTTGTATGTTCAACATGACTTGTCTCAAGAGTTGTGGTTATGCATACACATCACCTATTCCTCTTGTGCCTCAGTTTTAAGCTTTGGGATCCTAGAGGAAATGGTTCGGAAGCTTAACCTGGGTTCATTGGACGAGATGAGATCAGGGAGCGCATCGAGCCTGTTGCTTACAGGTTGA

Coding sequence (CDS)

ATGAGCGATCCTCCTAGAGTGAGATTCGAACTAGATCCAGAAATTGAAAGGACATTCAGAAGGAGAAGGAGGGAGCAGCGAAGGAACATCAATCCAATGGATGACCCTCTACATCTTCCAGATATTCCAGAAGATCAAGTTGATCCCCAGCAAAATTCGAATGATAGGACCAGAGCCATTCAAGCGTATGCTTTCCCGATGTTTGATGAGTTAAATCCAGGAATTGTGCGTCCTCAAATTGAGGCAGCAAATTTTGAAATAAAATCGATAATGTTTCAGATGTTACAGACCGTGGGTCAATTCCATGGTTTACCATATGAAGACCCCCATTTACATCTTAAGTCTTTTCTAGGAGTTAGTTATTCATTTGTGATTCAGGGAGTGTCAAGAGAATCAGCATCGAGTCATGACTGCAACATCAGTTGTCGTCGTGACGAAGTTACCTTGTTGCTGATGAAGCTTCCTGTAGGTTGGAGTTGTGTTAAGTCGTTGATGCTAAGTTGTAAAGTGTTTAGCTCAAGGTTTAAGCTGGCATTGACAACCTATGTGGATCAGGTTGCTCGTAAGCAAGATTTGCTTCAAGTGTTGTATGTTCAACATGACTTGTCTCAAGAGTTGTGGTTATGCATACACATCACCTATTCCTCTTGTGCCTCAGTTTTAAGCTTTGGGATCCTAGAGGAAATGGTTCGGAAGCTTAACCTGGGTTCATTGGACGAGATGAGATCAGGGAGCGCATCGAGCCTGTTGCTTACAGGTTGA

Protein sequence

MSDPPRVRFELDPEIERTFRRRRREQRRNINPMDDPLHLPDIPEDQVDPQQNSNDRTRAIQAYAFPMFDELNPGIVRPQIEAANFEIKSIMFQMLQTVGQFHGLPYEDPHLHLKSFLGVSYSFVIQGVSRESASSHDCNISCRRDEVTLLLMKLPVGWSCVKSLMLSCKVFSSRFKLALTTYVDQVARKQDLLQVLYVQHDLSQELWLCIHITYSSCASVLSFGILEEMVRKLNLGSLDEMRSGSASSLLLTG
Homology
BLAST of Lag0017923 vs. NCBI nr
Match: XP_030508936.1 (uncharacterized protein LOC115723589 [Cannabis sativa])

HSP 1 Score: 136.7 bits (343), Expect = 2.7e-28
Identity = 71/123 (57.72%), Postives = 94/123 (76.42%), Query Frame = 0

Query: 11  LDPEIERTFRRRRREQR-RNINPMDDPLHLPDIPEDQVDPQQNSNDRTRAIQAYAFPMFD 70
           +DPEIERTFR+RR+EQ+ +    M D   +  +  ++ +P   ++DR RAI+ YA PMF+
Sbjct: 13  IDPEIERTFRQRRKEQKAKKRCNMADGFEVGGV-HNEANPIALADDRARAIREYAAPMFN 72

Query: 71  ELNPGIVRPQIEAANFEIKSIMFQMLQTVGQFHGLPYEDPHLHLKSFLGVSYSFVIQGVS 130
           ELNPGIVRP+I+A +FE+K +MFQMLQTVGQF G P EDPHLH++SFL VS SF +QGVS
Sbjct: 73  ELNPGIVRPEIQAPHFELKPVMFQMLQTVGQFGGSPTEDPHLHIRSFLEVSDSFKLQGVS 132

Query: 131 RES 133
            E+
Sbjct: 133 EEA 134

BLAST of Lag0017923 vs. NCBI nr
Match: XP_022929949.1 (uncharacterized protein LOC111436411 [Cucurbita moschata])

HSP 1 Score: 129.4 bits (324), Expect = 4.3e-26
Identity = 69/137 (50.36%), Postives = 92/137 (67.15%), Query Frame = 0

Query: 1   MSDPPRVRFELDPEIERTFRRRRREQRR----NINPM----------DDPLHLPDIPEDQ 60
           M+ P  + F LDPEIERTFRRR +++++    NI  +          ++P  + +     
Sbjct: 1   MNPPTGLEFILDPEIERTFRRRLKKKKKMTEQNIQQIELGAQLNREFENPAMMANQERIT 60

Query: 61  VDPQQNSNDRTRAIQAYAFPMFDELNPGIVRPQIEAANFEIKSIMFQMLQTVGQFHGLPY 120
            +P   ++DR RAI+AYA P  +ELNP I+RP+I+   FE+K +MFQMLQT+GQFHGLP 
Sbjct: 61  ANPIHLADDRERAIRAYAHPAVEELNPCIIRPEIQGTTFELKPVMFQMLQTIGQFHGLPL 120

Query: 121 EDPHLHLKSFLGVSYSF 124
           EDPHLHLKSFLGVS SF
Sbjct: 121 EDPHLHLKSFLGVSDSF 137

BLAST of Lag0017923 vs. NCBI nr
Match: XP_017233063.1 (PREDICTED: uncharacterized protein LOC108207110 [Daucus carota subsp. sativus])

HSP 1 Score: 127.5 bits (319), Expect = 1.6e-25
Identity = 92/233 (39.48%), Postives = 124/233 (53.22%), Query Frame = 0

Query: 1   MSDPPRVRFELDPEIERTFRRRRREQRR---NINPMDDPLHLPDIPEDQVDPQQN--SND 60
           MS    V F  DPEIERTF RRR+ QR+       MDD ++  DIP   + P+     +D
Sbjct: 1   MSKRHPVVFAFDPEIERTFNRRRKAQRKIKQTQVAMDDNVNNGDIP---IVPRGAFIVDD 60

Query: 61  RTRAIQAYAFPMFDELNPGIVRPQIEAANFEIKSIMFQMLQTVGQFHGLPYEDPHLHLKS 120
           + RAI+ YA P F+ELN GI+RP I+A  FE+K +MFQMLQT+GQF G+P EDPHLHL+ 
Sbjct: 61  KDRAIRQYAAPRFEELNSGIIRPNIQATQFELKPVMFQMLQTIGQFSGMPTEDPHLHLRL 120

Query: 121 FLGVSYSFVIQGVSRESASSHDCNISCRRDEVTLLLMKLPVG----WSCVKSLMLSCKVF 180
           F+ +S SF  QGV  ++        S  RD     L  LP G    W+ +    LS K F
Sbjct: 121 FMEISDSFKFQGVPEDALRLKLFPYSV-RDRARTWLNSLPAGSVTTWNDLTEKFLS-KYF 180

Query: 181 SSRFKLALTTYVDQVARKQDLLQVLYVQHDLSQELW-LCIHITYSSCASVLSF 224
                  L   ++   ++ D  + LY   +  +EL   C H     C  + +F
Sbjct: 181 PPNMNAKLRNEINSFQQQDD--ESLYDAWERFKELLRKCPHHGILHCIQMETF 226

BLAST of Lag0017923 vs. NCBI nr
Match: XP_017239618.1 (PREDICTED: uncharacterized protein LOC108212402 [Daucus carota subsp. sativus])

HSP 1 Score: 125.9 bits (315), Expect = 4.8e-25
Identity = 84/200 (42.00%), Postives = 110/200 (55.00%), Query Frame = 0

Query: 1   MSDPPRVRFELDPEIERTFRRRRREQRR---NINPMDDPLHLPDIPEDQVDPQQN--SND 60
           MS+   V F  DPEIERTF RRR+ QR+       M D ++  DIP   V P      +D
Sbjct: 1   MSERHPVVFGFDPEIERTFNRRRKAQRKIKQTQVAMGDNINNGDIP---VVPAGAFIVDD 60

Query: 61  RTRAIQAYAFPMFDELNPGIVRPQIEAANFEIKSIMFQMLQTVGQFHGLPYEDPHLHLKS 120
           + RAI+ YA P F+ELN GI+RP I+A  FE+K +MFQMLQT+GQF G+P EDPHLHL+ 
Sbjct: 61  KDRAIRQYAAPCFEELNSGIIRPDIQATQFELKPVMFQMLQTIGQFSGMPTEDPHLHLRL 120

Query: 121 FLGVSYSFVIQGVSRESASSHDCNISCRRDEVTLLLMKLPVG----WSCVKSLMLSCKVF 180
           F+ +S SF  QGV  ++        S  RD     L  LP G    W+ +    LS K F
Sbjct: 121 FMEISDSFKFQGVPEDALRLKLFPYSV-RDRARTWLNSLPAGSVTTWNDLTEKFLS-KYF 180

Query: 181 SSRFKLALTTYVDQVARKQD 192
                  L   ++   ++ D
Sbjct: 181 PPNMNAKLWNEINSFQQQDD 195

BLAST of Lag0017923 vs. NCBI nr
Match: ERM93404.1 (hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda])

HSP 1 Score: 122.5 bits (306), Expect = 5.3e-24
Identity = 60/90 (66.67%), Postives = 72/90 (80.00%), Query Frame = 0

Query: 42  IPEDQVDPQQNSNDRTRAIQAYAFPMFDELNPGIVRPQIEAANFEIKSIMFQMLQTVGQF 101
           I +  V+P   ++DR RAI+ YA PMF+ELNPGIVRP+I+A  FE+K +MFQMLQTVGQF
Sbjct: 5   IAQQIVNPIILADDRARAIREYAAPMFNELNPGIVRPEIQAPQFELKPVMFQMLQTVGQF 64

Query: 102 HGLPYEDPHLHLKSFLGVSYSFVIQGVSRE 132
            G+P EDPHLHL+SFL VS SF IQGVS E
Sbjct: 65  SGMPTEDPHLHLRSFLEVSDSFKIQGVSEE 94

BLAST of Lag0017923 vs. ExPASy TrEMBL
Match: A0A6J1EQ90 (uncharacterized protein LOC111436411 OS=Cucurbita moschata OX=3662 GN=LOC111436411 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.1e-26
Identity = 69/137 (50.36%), Postives = 92/137 (67.15%), Query Frame = 0

Query: 1   MSDPPRVRFELDPEIERTFRRRRREQRR----NINPM----------DDPLHLPDIPEDQ 60
           M+ P  + F LDPEIERTFRRR +++++    NI  +          ++P  + +     
Sbjct: 1   MNPPTGLEFILDPEIERTFRRRLKKKKKMTEQNIQQIELGAQLNREFENPAMMANQERIT 60

Query: 61  VDPQQNSNDRTRAIQAYAFPMFDELNPGIVRPQIEAANFEIKSIMFQMLQTVGQFHGLPY 120
            +P   ++DR RAI+AYA P  +ELNP I+RP+I+   FE+K +MFQMLQT+GQFHGLP 
Sbjct: 61  ANPIHLADDRERAIRAYAHPAVEELNPCIIRPEIQGTTFELKPVMFQMLQTIGQFHGLPL 120

Query: 121 EDPHLHLKSFLGVSYSF 124
           EDPHLHLKSFLGVS SF
Sbjct: 121 EDPHLHLKSFLGVSDSF 137

BLAST of Lag0017923 vs. ExPASy TrEMBL
Match: U5CUI2 (Retrotrans_gag domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s04947p00003620 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.6e-24
Identity = 60/90 (66.67%), Postives = 72/90 (80.00%), Query Frame = 0

Query: 42  IPEDQVDPQQNSNDRTRAIQAYAFPMFDELNPGIVRPQIEAANFEIKSIMFQMLQTVGQF 101
           I +  V+P   ++DR RAI+ YA PMF+ELNPGIVRP+I+A  FE+K +MFQMLQTVGQF
Sbjct: 5   IAQQIVNPIILADDRARAIREYAAPMFNELNPGIVRPEIQAPQFELKPVMFQMLQTVGQF 64

Query: 102 HGLPYEDPHLHLKSFLGVSYSFVIQGVSRE 132
            G+P EDPHLHL+SFL VS SF IQGVS E
Sbjct: 65  SGMPTEDPHLHLRSFLEVSDSFKIQGVSEE 94

BLAST of Lag0017923 vs. ExPASy TrEMBL
Match: A0A6J1H7E4 (uncharacterized protein LOC111461168 OS=Cucurbita moschata OX=3662 GN=LOC111461168 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 7.5e-24
Identity = 55/81 (67.90%), Postives = 67/81 (82.72%), Query Frame = 0

Query: 51  QNSNDRTRAIQAYAFPMFDELNPGIVRPQIEAANFEIKSIMFQMLQTVGQFHGLPYEDPH 110
           Q ++DR RAI+AYA P  DELNP I+RP+++A  FE+K +MFQMLQT+GQFHGLP EDPH
Sbjct: 34  QLADDRERAIRAYAHPAVDELNPCIIRPEMQATTFELKPVMFQMLQTIGQFHGLPSEDPH 93

Query: 111 LHLKSFLGVSYSFVIQGVSRE 132
           LHLKSFLGVS SF  QGV ++
Sbjct: 94  LHLKSFLGVSDSFRFQGVDKD 114

BLAST of Lag0017923 vs. ExPASy TrEMBL
Match: U5CUK7 (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s03373p00007640 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.4e-22
Identity = 55/88 (62.50%), Postives = 71/88 (80.68%), Query Frame = 0

Query: 45  DQVDPQQNSNDRTRAIQAYAFPMFDELNPGIVRPQIEAANFEIKSIMFQMLQTVGQFHGL 104
           ++ +P   ++DR RAI+ YA PMF+ELN GIVRP+I+A +FE+K +MFQMLQTVGQF G 
Sbjct: 10  NEANPIALADDRARAIREYAAPMFNELNSGIVRPEIQAPHFELKPVMFQMLQTVGQFGGS 69

Query: 105 PYEDPHLHLKSFLGVSYSFVIQGVSRES 133
           P EDPHLH++SFL VS SF +QGVS E+
Sbjct: 70  PTEDPHLHIRSFLEVSDSFKLQGVSEEA 97

BLAST of Lag0017923 vs. ExPASy TrEMBL
Match: A0A6J1EEI2 (uncharacterized protein LOC111433394 OS=Cucurbita moschata OX=3662 GN=LOC111433394 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.4e-22
Identity = 52/79 (65.82%), Postives = 65/79 (82.28%), Query Frame = 0

Query: 53  SNDRTRAIQAYAFPMFDELNPGIVRPQIEAANFEIKSIMFQMLQTVGQFHGLPYEDPHLH 112
           ++DR RAI+AYA P  +ELNP I+RP+++A  FE+K +MFQMLQT+GQFHGLP EDPHLH
Sbjct: 45  ADDRERAIRAYAHPAVEELNPCIIRPEMQATTFELKPVMFQMLQTIGQFHGLPSEDPHLH 104

Query: 113 LKSFLGVSYSFVIQGVSRE 132
           LKSFLGVS SF  Q V ++
Sbjct: 105 LKSFLGVSDSFRFQRVDKD 123

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_030508936.12.7e-2857.72uncharacterized protein LOC115723589 [Cannabis sativa][more]
XP_022929949.14.3e-2650.36uncharacterized protein LOC111436411 [Cucurbita moschata][more]
XP_017233063.11.6e-2539.48PREDICTED: uncharacterized protein LOC108207110 [Daucus carota subsp. sativus][more]
XP_017239618.14.8e-2542.00PREDICTED: uncharacterized protein LOC108212402 [Daucus carota subsp. sativus][more]
ERM93404.15.3e-2466.67hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1EQ902.1e-2650.36uncharacterized protein LOC111436411 OS=Cucurbita moschata OX=3662 GN=LOC1114364... [more]
U5CUI22.6e-2466.67Retrotrans_gag domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMT... [more]
A0A6J1H7E47.5e-2467.90uncharacterized protein LOC111461168 OS=Cucurbita moschata OX=3662 GN=LOC1114611... [more]
U5CUK71.4e-2262.50Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s03373p00007640... [more]
A0A6J1EEI22.4e-2265.82uncharacterized protein LOC111433394 OS=Cucurbita moschata OX=3662 GN=LOC1114333... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..54
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..42

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0017923.1Lag0017923.1mRNA