Lag0017912 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017912
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	nuclear transcription factor Y subunit B-9-like
Location	chr5: 11509836 .. 11510462 (-)
RNA-Seq Expression	Lag0017912
Synteny	Lag0017912

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGTTGACCCCAAACAAGCCATCCTCTGGCAACAACACTCCCAGTAGCAACCACCACCACTCAAACGGTCGAAACGCCACGACCAACTGCCCCGCTACCGGGTCTGCCTCGATCGTCGCCACGAGCAATGAGCAGAGCCAACAATGCATCGTGCGGGAGCAAGACCAATACATGCCGATCGCTAATGTAATACGTATCATGCGACGAATCTTACCCTCTCATGCAAAGATATCGGATGATGCCAAGGAGACCATCCAAGAATGCGTGTCGGAGTACATCAGCTTCATCACTGGTGAGGCCAACGAGCGGTGTCAGCGAGAGCAGCGCAAGACGGTGACGGCAGAGGATGTCCTCTGGGCTATGGGGAAGCTAGGCTTTGACGACTACATTGAGCCACTGACTGTGTTCCTCAATCGCTATCGTGAGTCGGAGAGCGATCGAATTCGTACGGAGCCAATCATGAGGCGCAATGTGGATTACGGGCAACAAGTGGGGATGCTACCACCGTATGGGCAGGCGTTTCAGATAGGGCACGTTCCGACGGGGATGTTCGATGCAATGGGTGGGTACTACGGCGGAGGGGGGAGCGGCGGATCGAGCTCGGGGAATGGTAGCCAGCTTTGA

mRNA sequence

ATGTTGTTGACCCCAAACAAGCCATCCTCTGGCAACAACACTCCCAGTAGCAACCACCACCACTCAAACGGTCGAAACGCCACGACCAACTGCCCCGCTACCGGGTCTGCCTCGATCGTCGCCACGAGCAATGAGCAGAGCCAACAATGCATCGTGCGGGAGCAAGACCAATACATGCCGATCGCTAATGTAATACGTATCATGCGACGAATCTTACCCTCTCATGCAAAGATATCGGATGATGCCAAGGAGACCATCCAAGAATGCGTGTCGGAGTACATCAGCTTCATCACTGGTGAGGCCAACGAGCGGTGTCAGCGAGAGCAGCGCAAGACGGTGACGGCAGAGGATGTCCTCTGGGCTATGGGGAAGCTAGGCTTTGACGACTACATTGAGCCACTGACTGTGTTCCTCAATCGCTATCGTGAGTCGGAGAGCGATCGAATTCGTACGGAGCCAATCATGAGGCGCAATGTGGATTACGGGCAACAAGTGGGGATGCTACCACCGTATGGGCAGGCGTTTCAGATAGGGCACGTTCCGACGGGGATGTTCGATGCAATGGGTGGGTACTACGGCGGAGGGGGGAGCGGCGGATCGAGCTCGGGGAATGGTAGCCAGCTTTGA

Coding sequence (CDS)

ATGTTGTTGACCCCAAACAAGCCATCCTCTGGCAACAACACTCCCAGTAGCAACCACCACCACTCAAACGGTCGAAACGCCACGACCAACTGCCCCGCTACCGGGTCTGCCTCGATCGTCGCCACGAGCAATGAGCAGAGCCAACAATGCATCGTGCGGGAGCAAGACCAATACATGCCGATCGCTAATGTAATACGTATCATGCGACGAATCTTACCCTCTCATGCAAAGATATCGGATGATGCCAAGGAGACCATCCAAGAATGCGTGTCGGAGTACATCAGCTTCATCACTGGTGAGGCCAACGAGCGGTGTCAGCGAGAGCAGCGCAAGACGGTGACGGCAGAGGATGTCCTCTGGGCTATGGGGAAGCTAGGCTTTGACGACTACATTGAGCCACTGACTGTGTTCCTCAATCGCTATCGTGAGTCGGAGAGCGATCGAATTCGTACGGAGCCAATCATGAGGCGCAATGTGGATTACGGGCAACAAGTGGGGATGCTACCACCGTATGGGCAGGCGTTTCAGATAGGGCACGTTCCGACGGGGATGTTCGATGCAATGGGTGGGTACTACGGCGGAGGGGGGAGCGGCGGATCGAGCTCGGGGAATGGTAGCCAGCTTTGA

Protein sequence

MLLTPNKPSSGNNTPSSNHHHSNGRNATTNCPATGSASIVATSNEQSQQCIVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPIMRRNVDYGQQVGMLPPYGQAFQIGHVPTGMFDAMGGYYGGGGSGGSSSGNGSQL

Homology

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BLAST of Lag0017912 vs. NCBI nr
Match: XP_038905819.1 (nuclear transcription factor Y subunit B-9-like [Benincasa hispida])

HSP 1 Score: 359.4 bits (921), Expect = 2.1e-95
Identity = 184/209 (88.04%), Postives = 193/209 (92.34%), Query Frame = 0


Query: 1   MLLTPNKPSSGNNTPSSNHHHSNGRNATTNCPATGSASI-VATSNEQSQQCIVREQDQYM 60
           MLLTPNKP+S NNTP+SNHH SNG  AT N PAT    +  AT+NEQ+QQC+VREQDQYM
Sbjct: 30  MLLTPNKPTSANNTPNSNHHLSNGGAATGNSPATSPIPVATATNNEQNQQCMVREQDQYM 89

Query: 61  PIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVL 120
           PIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVL
Sbjct: 90  PIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVL 149

Query: 121 WAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPIMRRNVDYGQQVGMLPPYGQAFQIGH 180
           WAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPI+RRNVDYG QVGM+PPYGQAFQIGH
Sbjct: 150 WAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIGH 209

Query: 181 VPTGMFDAMGGYYGGGGSGGSSSGNGSQL 209
           VP GMFDAMGGYY GGGSGG S+GNGSQL
Sbjct: 210 VPAGMFDAMGGYYNGGGSGGPSAGNGSQL 238

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BLAST of Lag0017912 vs. NCBI nr
Match: XP_031738736.1 (nuclear transcription factor Y subunit B-9-like [Cucumis sativus])

HSP 1 Score: 355.1 bits (910), Expect = 4.0e-94
Identity = 182/210 (86.67%), Postives = 193/210 (91.90%), Query Frame = 0


Query: 1   MLLTPNKPSSGNNTPSSNHHHSNGRNATTNCPATGSASIVAT--SNEQSQQCIVREQDQY 60
           M+LTPNKP+S NNTP++NHH SNG  AT N  AT   S+ AT  +NEQ+QQC+VREQDQY
Sbjct: 1   MMLTPNKPTSINNTPNTNHHLSNGGTATGNSSATSPLSVAATANNNEQNQQCVVREQDQY 60

Query: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120
           MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV
Sbjct: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120

Query: 121 LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPIMRRNVDYGQQVGMLPPYGQAFQIG 180
           LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPI+RRNVDYG QVGM+ PYGQAFQIG
Sbjct: 121 LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMISPYGQAFQIG 180

Query: 181 HVPTGMFDAMGGYYGGGGSGGSSSGNGSQL 209
           HVP GMFDAMGGYYGGGGSGG S+GNGSQL
Sbjct: 181 HVPAGMFDAMGGYYGGGGSGGPSAGNGSQL 210

[Close]

BLAST of Lag0017912 vs. NCBI nr
Match: KAE8650106.1 (hypothetical protein Csa_009480 [Cucumis sativus])

HSP 1 Score: 355.1 bits (910), Expect = 4.0e-94
Identity = 182/210 (86.67%), Postives = 193/210 (91.90%), Query Frame = 0


Query: 1   MLLTPNKPSSGNNTPSSNHHHSNGRNATTNCPATGSASIVAT--SNEQSQQCIVREQDQY 60
           M+LTPNKP+S NNTP++NHH SNG  AT N  AT   S+ AT  +NEQ+QQC+VREQDQY
Sbjct: 31  MMLTPNKPTSINNTPNTNHHLSNGGTATGNSSATSPLSVAATANNNEQNQQCVVREQDQY 90

Query: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120
           MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV
Sbjct: 91  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 150

Query: 121 LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPIMRRNVDYGQQVGMLPPYGQAFQIG 180
           LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPI+RRNVDYG QVGM+ PYGQAFQIG
Sbjct: 151 LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMISPYGQAFQIG 210

Query: 181 HVPTGMFDAMGGYYGGGGSGGSSSGNGSQL 209
           HVP GMFDAMGGYYGGGGSGG S+GNGSQL
Sbjct: 211 HVPAGMFDAMGGYYGGGGSGGPSAGNGSQL 240

[Close]

BLAST of Lag0017912 vs. NCBI nr
Match: XP_022944445.1 (nuclear transcription factor Y subunit B-9-like [Cucurbita moschata])

HSP 1 Score: 352.1 bits (902), Expect = 3.4e-93
Identity = 183/210 (87.14%), Postives = 190/210 (90.48%), Query Frame = 0


Query: 1   MLLTPNKPSSGNNTPSSNHHHSNGRNATTNCPATGS--ASIVATSNEQSQQCIVREQDQY 60
           +LLT NK SS NNT +SNH  SN RN   N P TGS  ASI AT+NEQSQQCIVREQDQY
Sbjct: 29  VLLTTNKSSSANNTHNSNHQQSNSRNVAANSPVTGSIPASIAATNNEQSQQCIVREQDQY 88

Query: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120
           MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV
Sbjct: 89  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 148

Query: 121 LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPIMRRNVDYGQQVGMLPPYGQAFQIG 180
           LWAMGKLGFDDYIEPLTVFLNRYRESESDR+RTEPI+RRNVDYG QVGM+ PYGQ FQIG
Sbjct: 149 LWAMGKLGFDDYIEPLTVFLNRYRESESDRMRTEPILRRNVDYGPQVGMVTPYGQTFQIG 208

Query: 181 HVPTGMFDAMGGYYGGGGSGGSSSGNGSQL 209
           HVP GMFDAMGGYY GGG+GGSSSGNGSQL
Sbjct: 209 HVPIGMFDAMGGYYDGGGNGGSSSGNGSQL 238

[Close]

BLAST of Lag0017912 vs. NCBI nr
Match: XP_008449191.1 (PREDICTED: nuclear transcription factor Y subunit B-9 [Cucumis melo])

HSP 1 Score: 350.5 bits (898), Expect = 9.8e-93
Identity = 180/210 (85.71%), Postives = 191/210 (90.95%), Query Frame = 0


Query: 1   MLLTPNKPSSGNNTPSSNHHHSNGRNATTNCPATGSASIVAT--SNEQSQQCIVREQDQY 60
           M++TPNK +S NNTP+SNHH SNG  AT N  AT   S+ AT  +NEQ+QQC+VREQDQY
Sbjct: 1   MMVTPNKATSINNTPNSNHHLSNGGTATGNSSATSPLSVAATANNNEQNQQCVVREQDQY 60

Query: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120
           MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV
Sbjct: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120

Query: 121 LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPIMRRNVDYGQQVGMLPPYGQAFQIG 180
           LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPI+RRNVDYG QVGM+ PYGQAFQIG
Sbjct: 121 LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMISPYGQAFQIG 180

Query: 181 HVPTGMFDAMGGYYGGGGSGGSSSGNGSQL 209
           HVP GMFDAMGGYYGGGG GG S+GNGSQL
Sbjct: 181 HVPAGMFDAMGGYYGGGGGGGPSAGNGSQL 210

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BLAST of Lag0017912 vs. ExPASy Swiss-Prot
Match: Q84W66 (Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana OX=3702 GN=NFYB6 PE=1 SV=2)

HSP 1 Score: 188.3 bits (477), Expect = 8.5e-47
Identity = 89/107 (83.18%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 42  TSNEQSQQCIVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEA 101
           TSN   ++C VREQD++MPIANVIRIMRRILP+HAKISDD+KETIQECVSEYISFITGEA
Sbjct: 46  TSNGGEEECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEA 105

Query: 102 NERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDR 149
           NERCQREQRKT+TAEDVLWAM KLGFDDYIEPLT++L+RYRE E +R
Sbjct: 106 NERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 152

[Close]

BLAST of Lag0017912 vs. ExPASy Swiss-Prot
Match: Q9SFD8 (Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana OX=3702 GN=NFYB9 PE=1 SV=2)

HSP 1 Score: 186.4 bits (472), Expect = 3.2e-46
Identity = 116/217 (53.46%), Postives = 137/217 (63.13%), Query Frame = 0


Query: 8   PSSGNNTPSSNHHHSNGRNATTNCPATGSASIVATSN-------EQSQQCIVREQDQYMP 67
           P S    P S    +  +++    P T S  +    +       +Q   C+ REQDQYMP
Sbjct: 6   PFSHYQLPKSISELNLDQHSNNPTPMTSSVVVAGAGDKNNGIVVQQQPPCVAREQDQYMP 65

Query: 68  IANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLW 127
           IANVIRIMR+ LPSHAKISDDAKETIQECVSEYISF+TGEANERCQREQRKT+TAED+LW
Sbjct: 66  IANVIRIMRKTLPSHAKISDDAKETIQECVSEYISFVTGEANERCQREQRKTITAEDILW 125

Query: 128 AMGKLGFDDYIEPLTVFLNRYRESESDR---IRTEPIMRRNVDYGQQVGM------LPPY 187
           AM KLGFD+Y++PLTVF+NRYRE E+DR   +R EP   R    G  +G       LPP 
Sbjct: 126 AMSKLGFDNYVDPLTVFINRYREIETDRGSALRGEPPSLRQTYGGNGIGFHGPSHGLPPP 185

Query: 188 GQAFQIGHVPTGMFDAMGGYYGGGGSG--GSSSGNGS 207
           G  +  G +   M    G YY  G SG   SS G GS
Sbjct: 186 G-PYGYGMLDQSMVMGGGRYYQNGSSGQDESSVGGGS 221

[Close]

BLAST of Lag0017912 vs. ExPASy Swiss-Prot
Match: Q69J40 (Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB10 PE=1 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.3e-33
Identity = 62/96 (64.58%), Postives = 86/96 (89.58%), Query Frame = 0


Query: 53  REQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKT 112
           REQD+++PIANV RIM+R LP++AKIS DAKET+QECVSE+ISFITGEA+++CQRE+RKT
Sbjct: 21  REQDRFLPIANVSRIMKRALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKT 80

Query: 113 VTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDR 149
           +  +D+LWAM  LGF+DYI+PL ++L+++RE E ++
Sbjct: 81  INGDDLLWAMTTLGFEDYIDPLKLYLHKFRELEGEK 116

[Close]

BLAST of Lag0017912 vs. ExPASy Swiss-Prot
Match: Q60EQ4 (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 141.7 bits (356), Expect = 9.1e-33
Identity = 61/96 (63.54%), Postives = 83/96 (86.46%), Query Frame = 0


Query: 52  VREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRK 111
           VREQD+++PIAN+ RIM++ +P++ KI+ DAKET+QECVSE+ISFIT EA+++CQRE+RK
Sbjct: 36  VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 95

Query: 112 TVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESD 148
           T+  +D+LWAM  LGF+DYIEPL V+L +YRE E D
Sbjct: 96  TINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGD 131

[Close]

BLAST of Lag0017912 vs. ExPASy Swiss-Prot
Match: P25209 (Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 9.1e-33
Identity = 61/96 (63.54%), Postives = 83/96 (86.46%), Query Frame = 0


Query: 52  VREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRK 111
           VREQD+++PIAN+ RIM++ +P++ KI+ DAKET+QECVSE+ISFIT EA+++CQRE+RK
Sbjct: 29  VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 88

Query: 112 TVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESD 148
           T+  +D+LWAM  LGF+DYIEPL V+L +YRE E D
Sbjct: 89  TINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGD 124

[Close]

BLAST of Lag0017912 vs. ExPASy TrEMBL
Match: A0A6J1FYN7 (nuclear transcription factor Y subunit B-9-like OS=Cucurbita moschata OX=3662 GN=LOC111448893 PE=3 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.6e-93
Identity = 183/210 (87.14%), Postives = 190/210 (90.48%), Query Frame = 0


Query: 1   MLLTPNKPSSGNNTPSSNHHHSNGRNATTNCPATGS--ASIVATSNEQSQQCIVREQDQY 60
           +LLT NK SS NNT +SNH  SN RN   N P TGS  ASI AT+NEQSQQCIVREQDQY
Sbjct: 29  VLLTTNKSSSANNTHNSNHQQSNSRNVAANSPVTGSIPASIAATNNEQSQQCIVREQDQY 88

Query: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120
           MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV
Sbjct: 89  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 148

Query: 121 LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPIMRRNVDYGQQVGMLPPYGQAFQIG 180
           LWAMGKLGFDDYIEPLTVFLNRYRESESDR+RTEPI+RRNVDYG QVGM+ PYGQ FQIG
Sbjct: 149 LWAMGKLGFDDYIEPLTVFLNRYRESESDRMRTEPILRRNVDYGPQVGMVTPYGQTFQIG 208

Query: 181 HVPTGMFDAMGGYYGGGGSGGSSSGNGSQL 209
           HVP GMFDAMGGYY GGG+GGSSSGNGSQL
Sbjct: 209 HVPIGMFDAMGGYYDGGGNGGSSSGNGSQL 238

[Close]

BLAST of Lag0017912 vs. ExPASy TrEMBL
Match: A0A1S3BKV5 (nuclear transcription factor Y subunit B-9 OS=Cucumis melo OX=3656 GN=LOC103491142 PE=3 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 4.8e-93
Identity = 180/210 (85.71%), Postives = 191/210 (90.95%), Query Frame = 0


Query: 1   MLLTPNKPSSGNNTPSSNHHHSNGRNATTNCPATGSASIVAT--SNEQSQQCIVREQDQY 60
           M++TPNK +S NNTP+SNHH SNG  AT N  AT   S+ AT  +NEQ+QQC+VREQDQY
Sbjct: 1   MMVTPNKATSINNTPNSNHHLSNGGTATGNSSATSPLSVAATANNNEQNQQCVVREQDQY 60

Query: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120
           MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV
Sbjct: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120

Query: 121 LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPIMRRNVDYGQQVGMLPPYGQAFQIG 180
           LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPI+RRNVDYG QVGM+ PYGQAFQIG
Sbjct: 121 LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMISPYGQAFQIG 180

Query: 181 HVPTGMFDAMGGYYGGGGSGGSSSGNGSQL 209
           HVP GMFDAMGGYYGGGG GG S+GNGSQL
Sbjct: 181 HVPAGMFDAMGGYYGGGGGGGPSAGNGSQL 210

[Close]

BLAST of Lag0017912 vs. ExPASy TrEMBL
Match: A0A5D3CPF3 (Nuclear transcription factor Y subunit B-9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00390 PE=3 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 1.8e-92
Identity = 179/210 (85.24%), Postives = 191/210 (90.95%), Query Frame = 0


Query: 1   MLLTPNKPSSGNNTPSSNHHHSNGRNATTNCPATGSASIVAT--SNEQSQQCIVREQDQY 60
           M++TPNK +S N+TP+SNHH SNG  AT N  AT   S+ AT  +NEQ+QQC+VREQDQY
Sbjct: 1   MMVTPNKATSINSTPNSNHHLSNGGTATGNSSATSPLSVAATANNNEQNQQCVVREQDQY 60

Query: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120
           MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV
Sbjct: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120

Query: 121 LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPIMRRNVDYGQQVGMLPPYGQAFQIG 180
           LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPI+RRNVDYG QVGM+ PYGQAFQIG
Sbjct: 121 LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMISPYGQAFQIG 180

Query: 181 HVPTGMFDAMGGYYGGGGSGGSSSGNGSQL 209
           HVP GMFDAMGGYYGGGG GG S+GNGSQL
Sbjct: 181 HVPAGMFDAMGGYYGGGGGGGPSAGNGSQL 210

[Close]

BLAST of Lag0017912 vs. ExPASy TrEMBL
Match: A0A5A7VC19 (Nuclear transcription factor Y subunit B-9 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00440 PE=3 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 2.6e-91
Identity = 178/210 (84.76%), Postives = 190/210 (90.48%), Query Frame = 0


Query: 1   MLLTPNKPSSGNNTPSSNHHHSNGRNATTNCPATGSASIVAT--SNEQSQQCIVREQDQY 60
           M++TPNK +S N+T +SNHH SNG  AT N  AT   S+ AT  +NEQ+QQC+VREQDQY
Sbjct: 1   MMVTPNKATSINSTLNSNHHLSNGGTATGNSSATSPLSVAATANNNEQNQQCVVREQDQY 60

Query: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120
           MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV
Sbjct: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120

Query: 121 LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPIMRRNVDYGQQVGMLPPYGQAFQIG 180
           LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPI+RRNVDYG QVGM+ PYGQAFQIG
Sbjct: 121 LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMISPYGQAFQIG 180

Query: 181 HVPTGMFDAMGGYYGGGGSGGSSSGNGSQL 209
           HVP GMFDAMGGYYGGGG GG S+GNGSQL
Sbjct: 181 HVPAGMFDAMGGYYGGGGGGGPSAGNGSQL 210

[Close]

BLAST of Lag0017912 vs. ExPASy TrEMBL
Match: A0A6J1KV71 (nuclear transcription factor Y subunit B-9-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498480 PE=3 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 8.4e-90
Identity = 180/210 (85.71%), Postives = 186/210 (88.57%), Query Frame = 0


Query: 1   MLLTPNKPSSGNNTPSSNHHHSNGRNATTNCPATGS--ASIVATSNEQSQQCIVREQDQY 60
           +LLT NK S  NN    NH  SNGRN   N   TGS  ASI AT+N +SQQCIVREQDQY
Sbjct: 42  VLLTTNKSSFANN----NHQQSNGRNIAANSLMTGSTCASIAATNNGKSQQCIVREQDQY 101

Query: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120
           MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV
Sbjct: 102 MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 161

Query: 121 LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPIMRRNVDYGQQVGMLPPYGQAFQIG 180
           LWAMGKLGFDDYIEPLTVFLNRYRE ESDRIRTEPI+RRNVDYG QVGM+PPYGQ FQIG
Sbjct: 162 LWAMGKLGFDDYIEPLTVFLNRYRELESDRIRTEPILRRNVDYGPQVGMVPPYGQTFQIG 221

Query: 181 HVPTGMFDAMGGYYGGGGSGGSSSGNGSQL 209
           HVPTGMFDAMGGYY GGG+GGSSSGNGSQL
Sbjct: 222 HVPTGMFDAMGGYYDGGGNGGSSSGNGSQL 247

[Close]

BLAST of Lag0017912 vs. TAIR 10
Match: AT5G47670.1 (nuclear factor Y, subunit B6 )

HSP 1 Score: 188.3 bits (477), Expect = 6.0e-48
Identity = 89/107 (83.18%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 42  TSNEQSQQCIVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEA 101
           TSN   ++C VREQD++MPIANVIRIMRRILP+HAKISDD+KETIQECVSEYISFITGEA
Sbjct: 46  TSNGGEEECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEA 105

Query: 102 NERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDR 149
           NERCQREQRKT+TAEDVLWAM KLGFDDYIEPLT++L+RYRE E +R
Sbjct: 106 NERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 152

[Close]

BLAST of Lag0017912 vs. TAIR 10
Match: AT5G47670.2 (nuclear factor Y, subunit B6 )

HSP 1 Score: 188.3 bits (477), Expect = 6.0e-48
Identity = 89/107 (83.18%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 42  TSNEQSQQCIVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEA 101
           TSN   ++C VREQD++MPIANVIRIMRRILP+HAKISDD+KETIQECVSEYISFITGEA
Sbjct: 17  TSNGGEEECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEA 76

Query: 102 NERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDR 149
           NERCQREQRKT+TAEDVLWAM KLGFDDYIEPLT++L+RYRE E +R
Sbjct: 77  NERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 123

[Close]

BLAST of Lag0017912 vs. TAIR 10
Match: AT1G21970.1 (Histone superfamily protein )

HSP 1 Score: 186.4 bits (472), Expect = 2.3e-47
Identity = 116/217 (53.46%), Postives = 137/217 (63.13%), Query Frame = 0


Query: 8   PSSGNNTPSSNHHHSNGRNATTNCPATGSASIVATSN-------EQSQQCIVREQDQYMP 67
           P S    P S    +  +++    P T S  +    +       +Q   C+ REQDQYMP
Sbjct: 6   PFSHYQLPKSISELNLDQHSNNPTPMTSSVVVAGAGDKNNGIVVQQQPPCVAREQDQYMP 65

Query: 68  IANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLW 127
           IANVIRIMR+ LPSHAKISDDAKETIQECVSEYISF+TGEANERCQREQRKT+TAED+LW
Sbjct: 66  IANVIRIMRKTLPSHAKISDDAKETIQECVSEYISFVTGEANERCQREQRKTITAEDILW 125

Query: 128 AMGKLGFDDYIEPLTVFLNRYRESESDR---IRTEPIMRRNVDYGQQVGM------LPPY 187
           AM KLGFD+Y++PLTVF+NRYRE E+DR   +R EP   R    G  +G       LPP 
Sbjct: 126 AMSKLGFDNYVDPLTVFINRYREIETDRGSALRGEPPSLRQTYGGNGIGFHGPSHGLPPP 185

Query: 188 GQAFQIGHVPTGMFDAMGGYYGGGGSG--GSSSGNGS 207
           G  +  G +   M    G YY  G SG   SS G GS
Sbjct: 186 G-PYGYGMLDQSMVMGGGRYYQNGSSGQDESSVGGGS 221

[Close]

BLAST of Lag0017912 vs. TAIR 10
Match: AT5G47640.1 (nuclear factor Y, subunit B2 )

HSP 1 Score: 140.2 bits (352), Expect = 1.9e-33
Identity = 81/176 (46.02%), Postives = 113/176 (64.20%), Query Frame = 0


Query: 43  SNEQSQQCI-VREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEA 102
           +N+  Q  +  REQD+++PIANV RIM++ LP++AKIS DAKET+QECVSE+ISF+TGEA
Sbjct: 15  NNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEA 74

Query: 103 NERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRI------------ 162
           +++CQ+E+RKT+  +D+LWAM  LGF+DY+EPL V+L R+RE E +R             
Sbjct: 75  SDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTGLGRPQTGGEVG 134

Query: 163 --RTEPIMRRNVDYGQQVGMLPPYGQAFQIGHVPTGMFDAMGGYYGGGGSGGSSSG 204
             + + +      YG   GM   Y Q  Q  H    M+ A GG  G    GG++SG
Sbjct: 135 EHQRDAVGDGGGFYGGGGGM--QYHQHHQFLHQQNHMYGATGG--GSDSGGGAASG 186

[Close]

BLAST of Lag0017912 vs. TAIR 10
Match: AT4G14540.1 (nuclear factor Y, subunit B3 )

HSP 1 Score: 139.8 bits (351), Expect = 2.5e-33
Identity = 76/153 (49.67%), Postives = 101/153 (66.01%), Query Frame = 0


Query: 53  REQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKT 112
           REQD+++PIANV RIM++ LP++AKIS DAKET+QECVSE+ISFITGEA+++CQRE+RKT
Sbjct: 20  REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKT 79

Query: 113 VTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPIMRRNVDYGQQVGMLPPYG 172
           +  +D+LWAM  LGF+DY+EPL V+L +YRE E ++  T          G+Q        
Sbjct: 80  INGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTA---------GRQ-------- 139

Query: 173 QAFQIGHVPTGMFDAMGGYYGGGGSGGSSSGNG 206
                           G   GGGG GG+ SG+G
Sbjct: 140 ----------------GDKEGGGGGGGAGSGSG 139

The following BLAST results are available for this feature:

BLAST of Lag0017912 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905819.1	2.1e-95	88.04	nuclear transcription factor Y subunit B-9-like [Benincasa hispida]	[more]
XP_031738736.1	4.0e-94	86.67	nuclear transcription factor Y subunit B-9-like [Cucumis sativus]	[more]
KAE8650106.1	4.0e-94	86.67	hypothetical protein Csa_009480 [Cucumis sativus]	[more]
XP_022944445.1	3.4e-93	87.14	nuclear transcription factor Y subunit B-9-like [Cucurbita moschata]	[more]
XP_008449191.1	9.8e-93	85.71	PREDICTED: nuclear transcription factor Y subunit B-9 [Cucumis melo]	[more]

BLAST of Lag0017912 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84W66	8.5e-47	83.18	Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9SFD8	3.2e-46	53.46	Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q69J40	5.3e-33	64.58	Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=3...	[more]
Q60EQ4	9.1e-33	63.54	Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39...	[more]
P25209	9.1e-33	63.54	Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1	[more]

BLAST of Lag0017912 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FYN7	1.6e-93	87.14	nuclear transcription factor Y subunit B-9-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A1S3BKV5	4.8e-93	85.71	nuclear transcription factor Y subunit B-9 OS=Cucumis melo OX=3656 GN=LOC1034911...	[more]
A0A5D3CPF3	1.8e-92	85.24	Nuclear transcription factor Y subunit B-9 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5A7VC19	2.6e-91	84.76	Nuclear transcription factor Y subunit B-9 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A6J1KV71	8.4e-90	85.71	nuclear transcription factor Y subunit B-9-like isoform X1 OS=Cucurbita maxima O...	[more]

BLAST of Lag0017912 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G47670.1	6.0e-48	83.18	nuclear factor Y, subunit B6	[more]
AT5G47670.2	6.0e-48	83.18	nuclear factor Y, subunit B6	[more]
AT1G21970.1	2.3e-47	53.46	Histone superfamily protein	[more]
AT5G47640.1	1.9e-33	46.02	nuclear factor Y, subunit B2	[more]
AT4G14540.1	2.5e-33	49.67	nuclear factor Y, subunit B3	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 105..123 score: 32.06 coord: 124..142 score: 31.46 coord: 86..104 score: 43.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	PANTHER	PTHR11064:SF115	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-9	coord: 34..201
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 59..122 e-value: 2.3E-25 score: 88.6
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 45..164 e-value: 6.6E-41 score: 141.4
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 55..148
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 34..201
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 89..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0017912.1	Lag0017912.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding