Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAGGCTATGTAAAGCTTATTTTATGGAAGCTAAATGGTTTCATCAAGGGAATGTGCCAACAATGGAAGAGTATATGAAAGTTGCCACTATATCTGGCACCTATTATGTTTTTGCTTCGACTTTATTCCTTGGTATGAGAGTTACTTCCAAAGAGGTTTTCCAATGGGTTAAGAGTGAACCCATGCTTCTTCAAGCAACGGCAGTAATTGGCAGACTCATGAATGATATAACTTCCCACAAGGTACACAAGAATTAAAAAAAAAAATTGTATTAATATCGTTAAATCCTATTTAATTGAGGTCTTTTTATAATGTTTTTGTTTTTACTTTTCTATCTTTTTAAATTAAATTATAAGCAATTTTGAAAAGCATATTTTAAGTTTCGATCATATCCCAATTTGATTAATTATAGTTTGAACAAGAGAGAGGTCATGTTGTTTCTGCTGTTGAATGCTATATGAAGCAATATGGAGAATTTGAAGAAAAGGCCCTGGCTGAACTAGAAAAGCAAGTTGTTAAAGCATGGAAAGATGTAACAGAAGACTACATAAAATCTACCAGGATTCCAAACGTGATCCTTGTACGCATGCTAAACATTGCTCGAGTCACAGACCTCTTTTATAAGGAGGAGGATGGTTACACAATGGTTGATGGAGCTACCAAGCACTTCATTACCTTTATGCTCGTAGATCCTGTGTGA
mRNA sequence
ATGAAAAGGCTATGTAAAGCTTATTTTATGGAAGCTAAATGGTTTCATCAAGGGAATGTGCCAACAATGGAAGAGTATATGAAAGTTGCCACTATATCTGGCACCTATTATGTTTTTGCTTCGACTTTATTCCTTGGTATGAGAGTTACTTCCAAAGAGGTTTTCCAATGGGTTAAGAGTGAACCCATGCTTCTTCAAGCAACGGCAGTAATTGGCAGACTCATGAATGATATAACTTCCCACAAGTTTGAACAAGAGAGAGGTCATGTTGTTTCTGCTGTTGAATGCTATATGAAGCAATATGGAGAATTTGAAGAAAAGGCCCTGGCTGAACTAGAAAAGCAAGTTGTTAAAGCATGGAAAGATGTAACAGAAGACTACATAAAATCTACCAGGATTCCAAACGTGATCCTTGTACGCATGCTAAACATTGCTCGAGTCACAGACCTCTTTTATAAGGAGGAGGATGGTTACACAATGGTTGATGGAGCTACCAAGCACTTCATTACCTTTATGCTCGTAGATCCTGTGTGA
Coding sequence (CDS)
ATGAAAAGGCTATGTAAAGCTTATTTTATGGAAGCTAAATGGTTTCATCAAGGGAATGTGCCAACAATGGAAGAGTATATGAAAGTTGCCACTATATCTGGCACCTATTATGTTTTTGCTTCGACTTTATTCCTTGGTATGAGAGTTACTTCCAAAGAGGTTTTCCAATGGGTTAAGAGTGAACCCATGCTTCTTCAAGCAACGGCAGTAATTGGCAGACTCATGAATGATATAACTTCCCACAAGTTTGAACAAGAGAGAGGTCATGTTGTTTCTGCTGTTGAATGCTATATGAAGCAATATGGAGAATTTGAAGAAAAGGCCCTGGCTGAACTAGAAAAGCAAGTTGTTAAAGCATGGAAAGATGTAACAGAAGACTACATAAAATCTACCAGGATTCCAAACGTGATCCTTGTACGCATGCTAAACATTGCTCGAGTCACAGACCTCTTTTATAAGGAGGAGGATGGTTACACAATGGTTGATGGAGCTACCAAGCACTTCATTACCTTTATGCTCGTAGATCCTGTGTGA
Protein sequence
MKRLCKAYFMEAKWFHQGNVPTMEEYMKVATISGTYYVFASTLFLGMRVTSKEVFQWVKSEPMLLQATAVIGRLMNDITSHKFEQERGHVVSAVECYMKQYGEFEEKALAELEKQVVKAWKDVTEDYIKSTRIPNVILVRMLNIARVTDLFYKEEDGYTMVDGATKHFITFMLVDPV
Homology
BLAST of Lag0017778 vs. NCBI nr
Match:
XP_022143456.1 ((-)-germacrene D synthase-like isoform X1 [Momordica charantia])
HSP 1 Score: 258.1 bits (658), Expect = 5.7e-65
Identity = 124/178 (69.66%), Postives = 146/178 (82.02%), Query Frame = 0
Query: 1 MKRLCKAYFMEAKWFHQGNVPTMEEYMKVATISGTYYVFASTLFLGM-RVTSKEVFQWVK 60
MKR C+AY +EAKWFH+G+VP+MEEYM+VA +S YY+FAS FLGM V SKE FQWV
Sbjct: 379 MKRQCRAYLVEAKWFHKGHVPSMEEYMEVAIVSAAYYLFASVSFLGMGDVASKEAFQWVM 438
Query: 61 SEPMLLQATAVIGRLMNDITSHKFEQERGHVVSAVECYMKQYGEFEEKALAELEKQVVKA 120
S+PMLL AT VIGRL+NDI SHKFEQERGHV SAVECYMKQY EE+A+ ELEKQV+KA
Sbjct: 439 SDPMLLNATGVIGRLVNDIASHKFEQERGHVASAVECYMKQYEVSEEEAVGELEKQVIKA 498
Query: 121 WKDVTEDYIKSTRIPNVILVRMLNIARVTDLFYKEEDGYTMVDGATKHFITFMLVDPV 178
WKD+TEDY+KSTR PN I+ + N+AR++DLFYKE DGYT DG T+ FIT +L DPV
Sbjct: 499 WKDITEDYMKSTRFPNAIVACVTNVARLSDLFYKEGDGYTFPDGETRRFITSILKDPV 556
BLAST of Lag0017778 vs. NCBI nr
Match:
XP_022143458.1 ((-)-germacrene D synthase-like isoform X3 [Momordica charantia])
HSP 1 Score: 258.1 bits (658), Expect = 5.7e-65
Identity = 124/178 (69.66%), Postives = 146/178 (82.02%), Query Frame = 0
Query: 1 MKRLCKAYFMEAKWFHQGNVPTMEEYMKVATISGTYYVFASTLFLGM-RVTSKEVFQWVK 60
MKR C+AY +EAKWFH+G+VP+MEEYM+VA +S YY+FAS FLGM V SKE FQWV
Sbjct: 279 MKRQCRAYLVEAKWFHKGHVPSMEEYMEVAIVSAAYYLFASVSFLGMGDVASKEAFQWVM 338
Query: 61 SEPMLLQATAVIGRLMNDITSHKFEQERGHVVSAVECYMKQYGEFEEKALAELEKQVVKA 120
S+PMLL AT VIGRL+NDI SHKFEQERGHV SAVECYMKQY EE+A+ ELEKQV+KA
Sbjct: 339 SDPMLLNATGVIGRLVNDIASHKFEQERGHVASAVECYMKQYEVSEEEAVGELEKQVIKA 398
Query: 121 WKDVTEDYIKSTRIPNVILVRMLNIARVTDLFYKEEDGYTMVDGATKHFITFMLVDPV 178
WKD+TEDY+KSTR PN I+ + N+AR++DLFYKE DGYT DG T+ FIT +L DPV
Sbjct: 399 WKDITEDYMKSTRFPNAIVACVTNVARLSDLFYKEGDGYTFPDGETRRFITSILKDPV 456
BLAST of Lag0017778 vs. NCBI nr
Match:
XP_038903578.1 (LOW QUALITY PROTEIN: (-)-germacrene D synthase-like [Benincasa hispida])
HSP 1 Score: 253.8 bits (647), Expect = 1.1e-63
Identity = 118/178 (66.29%), Postives = 149/178 (83.71%), Query Frame = 0
Query: 1 MKRLCKAYFMEAKWFHQGNVPTMEEYMKVATISGTYYVFASTLFLGM-RVTSKEVFQWVK 60
MKR C+AYFMEAKWF++G +PTMEEYMKVA IS YY+FAS FL + + S+EVF+W +
Sbjct: 315 MKRQCRAYFMEAKWFNEGYIPTMEEYMKVALISAAYYLFASVSFLALGNIASREVFEWAQ 374
Query: 61 SEPMLLQATAVIGRLMNDITSHKFEQERGHVVSAVECYMKQYGEFEEKALAELEKQVVKA 120
++PMLL+AT VIGRL+NDI SHKFEQ+RGHV SA+ECYMK+YG EE+AL +L+K+V +A
Sbjct: 375 TDPMLLKATGVIGRLLNDIASHKFEQKRGHVASAIECYMKEYGVSEEEALTKLDKEVERA 434
Query: 121 WKDVTEDYIKSTRIPNVILVRMLNIARVTDLFYKEEDGYTMVDGATKHFITFMLVDPV 178
WKDVT+DYIKS++ PNVIL +LN+AR++DLFYKE DGYT DG TK FIT +L+ PV
Sbjct: 435 WKDVTKDYIKSSKFPNVILDCVLNVARLSDLFYKEGDGYTFADGETKQFITLLLIHPV 492
BLAST of Lag0017778 vs. NCBI nr
Match:
XP_022143530.1 (valencene synthase-like isoform X2 [Momordica charantia])
HSP 1 Score: 251.9 bits (642), Expect = 4.1e-63
Identity = 122/178 (68.54%), Postives = 144/178 (80.90%), Query Frame = 0
Query: 1 MKRLCKAYFMEAKWFHQGNVPTMEEYMKVATISGTYYVFASTLFLGM-RVTSKEVFQWVK 60
MKR C+AYF EAKWF++G VPTMEEYM+VA+IS +Y++FA+ FLGM V S EVFQW K
Sbjct: 301 MKRQCRAYFTEAKWFYEGYVPTMEEYMEVASISASYHLFAAASFLGMGDVASNEVFQWAK 360
Query: 61 SEPMLLQATAVIGRLMNDITSHKFEQERGHVVSAVECYMKQYGEFEEKALAELEKQVVKA 120
S+P+LL AT VIGRLMNDI SHKFEQERGHV SAVECYMKQYG E +A+ ELEKQV+KA
Sbjct: 361 SDPILLSATGVIGRLMNDIVSHKFEQERGHVASAVECYMKQYGVSEGEAIHELEKQVIKA 420
Query: 121 WKDVTEDYIKSTRIPNVILVRMLNIARVTDLFYKEEDGYTMVDGATKHFITFMLVDPV 178
WKD+ EDY+K TR PN IL ++N+ R++D FYKEEDGYT +G T FIT ML DPV
Sbjct: 421 WKDIIEDYMKCTRFPNAILSCVMNVDRLSDFFYKEEDGYTFPNGETNRFITSMLKDPV 478
BLAST of Lag0017778 vs. NCBI nr
Match:
XP_022143529.1 ((-)-germacrene D synthase-like isoform X1 [Momordica charantia])
HSP 1 Score: 251.9 bits (642), Expect = 4.1e-63
Identity = 122/178 (68.54%), Postives = 144/178 (80.90%), Query Frame = 0
Query: 1 MKRLCKAYFMEAKWFHQGNVPTMEEYMKVATISGTYYVFASTLFLGM-RVTSKEVFQWVK 60
MKR C+AYF EAKWF++G VPTMEEYM+VA+IS +Y++FA+ FLGM V S EVFQW K
Sbjct: 374 MKRQCRAYFTEAKWFYEGYVPTMEEYMEVASISASYHLFAAASFLGMGDVASNEVFQWAK 433
Query: 61 SEPMLLQATAVIGRLMNDITSHKFEQERGHVVSAVECYMKQYGEFEEKALAELEKQVVKA 120
S+P+LL AT VIGRLMNDI SHKFEQERGHV SAVECYMKQYG E +A+ ELEKQV+KA
Sbjct: 434 SDPILLSATGVIGRLMNDIVSHKFEQERGHVASAVECYMKQYGVSEGEAIHELEKQVIKA 493
Query: 121 WKDVTEDYIKSTRIPNVILVRMLNIARVTDLFYKEEDGYTMVDGATKHFITFMLVDPV 178
WKD+ EDY+K TR PN IL ++N+ R++D FYKEEDGYT +G T FIT ML DPV
Sbjct: 494 WKDIIEDYMKCTRFPNAILSCVMNVDRLSDFFYKEEDGYTFPNGETNRFITSMLKDPV 551
BLAST of Lag0017778 vs. ExPASy Swiss-Prot
Match:
F6M8H5 (Probable sesquiterpene synthase OS=Santalum austrocaledonicum OX=293154 GN=SesquiTPS PE=3 SV=1)
HSP 1 Score: 187.6 bits (475), Expect = 1.2e-46
Identity = 89/178 (50.00%), Postives = 122/178 (68.54%), Query Frame = 0
Query: 1 MKRLCKAYFMEAKWFHQGNVPTMEEYMKVATISGTYYVFASTLFLGM-RVTSKEVFQWVK 60
MK+L + Y EAKW H+ VPT +EYM VA ++ Y + +LGM + SKE F W+
Sbjct: 383 MKKLVEGYMDEAKWCHEKYVPTFQEYMSVALVTSGYTFLTTISYLGMGEIASKEAFDWLF 442
Query: 61 SEPMLLQATAVIGRLMNDITSHKFEQERGHVVSAVECYMKQYGEFEEKALAELEKQVVKA 120
S P +++A+ +GRLM+D SHKFEQERGHV S +ECYMKQYG EE+A E K++VKA
Sbjct: 443 SHPPVIEASESVGRLMDDTRSHKFEQERGHVASGIECYMKQYGVTEEEARDEFRKRLVKA 502
Query: 121 WKDVTEDYIKSTRIPNVILVRMLNIARVTDLFYKEEDGYTMVDGATKHFITFMLVDPV 178
WKD+ E+ ++ R+P +L+R+LN+ RV D+ YK EDGYT V A K I +L+DP+
Sbjct: 503 WKDINEECLRPYRVPKPLLMRILNLTRVIDVIYKNEDGYTHVKKAMKDNIASLLIDPM 560
BLAST of Lag0017778 vs. ExPASy Swiss-Prot
Match:
F6M8H7 (Probable sesquiterpene synthase OS=Santalum murrayanum OX=453085 GN=STPS PE=3 SV=1)
HSP 1 Score: 186.8 bits (473), Expect = 2.1e-46
Identity = 89/178 (50.00%), Postives = 121/178 (67.98%), Query Frame = 0
Query: 1 MKRLCKAYFMEAKWFHQGNVPTMEEYMKVATISGTYYVFASTLFLGM-RVTSKEVFQWVK 60
MK + + Y EAKW H+ VPT +EYM VA ++ Y + +LGM + SKE F W+
Sbjct: 383 MKTIVEGYMDEAKWCHEKYVPTFQEYMSVALVTSGYTFLTTISYLGMGEIASKEAFDWLF 442
Query: 61 SEPMLLQATAVIGRLMNDITSHKFEQERGHVVSAVECYMKQYGEFEEKALAELEKQVVKA 120
S P +++A+ +GRLM+D+ SHKFEQERGHV S +ECYMKQYG EE+A E K++VKA
Sbjct: 443 SHPPVIEASESVGRLMDDMRSHKFEQERGHVASGIECYMKQYGVTEEEAHDEFRKRLVKA 502
Query: 121 WKDVTEDYIKSTRIPNVILVRMLNIARVTDLFYKEEDGYTMVDGATKHFITFMLVDPV 178
WKD+ E+ ++ R+P +L R+LN+ RV D+ YK EDGYT V A K I +L+DPV
Sbjct: 503 WKDINEECLRPYRVPKPLLTRILNLTRVIDVIYKNEDGYTHVKKAMKDNIASLLIDPV 560
BLAST of Lag0017778 vs. ExPASy Swiss-Prot
Match:
B5A435 (Sesquiterpene synthase OS=Santalum album OX=35974 PE=1 SV=1)
HSP 1 Score: 186.8 bits (473), Expect = 2.1e-46
Identity = 90/178 (50.56%), Postives = 122/178 (68.54%), Query Frame = 0
Query: 1 MKRLCKAYFMEAKWFHQGNVPTMEEYMKVATISGTYYVFASTLFLGM-RVTSKEVFQWVK 60
MK+L + Y EAKW H+ VPT EEYM VA ++ Y + +LGM + SKE F W+
Sbjct: 380 MKKLVEGYMDEAKWCHEKYVPTFEEYMPVALVTSGYTFLTTISYLGMGEIASKEAFDWLF 439
Query: 61 SEPMLLQATAVIGRLMNDITSHKFEQERGHVVSAVECYMKQYGEFEEKALAELEKQVVKA 120
S P +++A+ + RLM+D+ SHKFEQERGHV S +ECYMKQYG EE+A E KQ+VKA
Sbjct: 440 SHPPVIEASESVCRLMDDMRSHKFEQERGHVASGIECYMKQYGVTEEEAHDEFRKQLVKA 499
Query: 121 WKDVTEDYIKSTRIPNVILVRMLNIARVTDLFYKEEDGYTMVDGATKHFITFMLVDPV 178
WKD+ E+ ++ R+P +L+R+LN+ RV D+ YK EDGYT V A K I +L+DP+
Sbjct: 500 WKDINEECLRPYRVPKPLLMRILNLTRVIDVIYKNEDGYTHVKKAMKDNIASLLIDPM 557
BLAST of Lag0017778 vs. ExPASy Swiss-Prot
Match:
Q6Q3H3 ((-)-germacrene D synthase OS=Vitis vinifera OX=29760 GN=VIT_19s0014g04930 PE=1 SV=1)
HSP 1 Score: 183.7 bits (465), Expect = 1.8e-45
Identity = 88/178 (49.44%), Postives = 123/178 (69.10%), Query Frame = 0
Query: 1 MKRLCKAYFMEAKWFHQGNVPTMEEYMKVATISGTYYVFASTLFLGM-RVTSKEVFQWVK 60
MK +AY+ EAKW +PTMEEYM VA ++ Y + A+T F+GM +KE F W+
Sbjct: 378 MKNQVRAYYEEAKWLQVQQIPTMEEYMPVALVTSAYSMLATTSFVGMGDAVTKESFDWIF 437
Query: 61 SEPMLLQATAVIGRLMNDITSHKFEQERGHVVSAVECYMKQYGEFEEKALAELEKQVVKA 120
S+P +++A+A++ RLM+D+ HKFEQ+RGHV SAVECYMKQ+G E++ E + V +A
Sbjct: 438 SKPKIVRASAIVCRLMDDMVFHKFEQKRGHVASAVECYMKQHGASEQETPNEFPQPVREA 497
Query: 121 WKDVTEDYIKSTRIPNVILVRMLNIARVTDLFYKEEDGYTMVDGATKHFITFMLVDPV 178
WKD+ E+ + T +P IL+R+LN+ARV D+ YK EDGYT K F+T ML+DPV
Sbjct: 498 WKDINEECLIPTAVPMPILMRVLNLARVIDVIYKNEDGYTHFGAVLKDFVTSMLIDPV 555
BLAST of Lag0017778 vs. ExPASy Swiss-Prot
Match:
F6M8H4 (Probable sesquiterpene synthase OS=Santalum album OX=35974 GN=SesquiTPS1 PE=3 SV=1)
HSP 1 Score: 182.6 bits (462), Expect = 4.0e-45
Identity = 87/178 (48.88%), Postives = 121/178 (67.98%), Query Frame = 0
Query: 1 MKRLCKAYFMEAKWFHQGNVPTMEEYMKVATISGTYYVFASTLFLGM-RVTSKEVFQWVK 60
MK+L + Y EAKW H+ VPT EEYM VA ++ Y + +LGM + SKE F W+
Sbjct: 380 MKKLVEGYMDEAKWCHEKYVPTFEEYMSVALVTSGYTFLTTMSYLGMGEIASKEAFDWLF 439
Query: 61 SEPMLLQATAVIGRLMNDITSHKFEQERGHVVSAVECYMKQYGEFEEKALAELEKQVVKA 120
S P +++A+ +GRLM+D+ SHKFE+ERGHV S +ECYMKQY EE+A E K++VKA
Sbjct: 440 SHPPVIEASESVGRLMDDMRSHKFERERGHVASGIECYMKQYSVTEEEAYDEFCKRLVKA 499
Query: 121 WKDVTEDYIKSTRIPNVILVRMLNIARVTDLFYKEEDGYTMVDGATKHFITFMLVDPV 178
WKD+ E+ ++ +P +L+R+LN+ RV D+ YK EDGYT V A K I +L+DP+
Sbjct: 500 WKDINEECLRPYHVPKPLLMRILNLTRVIDVIYKNEDGYTHVKKAMKDNIASLLIDPM 557
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022143456.1 | 5.7e-65 | 69.66 | (-)-germacrene D synthase-like isoform X1 [Momordica charantia] | [more] |
XP_022143458.1 | 5.7e-65 | 69.66 | (-)-germacrene D synthase-like isoform X3 [Momordica charantia] | [more] |
XP_038903578.1 | 1.1e-63 | 66.29 | LOW QUALITY PROTEIN: (-)-germacrene D synthase-like [Benincasa hispida] | [more] |
XP_022143530.1 | 4.1e-63 | 68.54 | valencene synthase-like isoform X2 [Momordica charantia] | [more] |
XP_022143529.1 | 4.1e-63 | 68.54 | (-)-germacrene D synthase-like isoform X1 [Momordica charantia] | [more] |
Match Name | E-value | Identity | Description | |
F6M8H5 | 1.2e-46 | 50.00 | Probable sesquiterpene synthase OS=Santalum austrocaledonicum OX=293154 GN=Sesqu... | [more] |
F6M8H7 | 2.1e-46 | 50.00 | Probable sesquiterpene synthase OS=Santalum murrayanum OX=453085 GN=STPS PE=3 SV... | [more] |
B5A435 | 2.1e-46 | 50.56 | Sesquiterpene synthase OS=Santalum album OX=35974 PE=1 SV=1 | [more] |
Q6Q3H3 | 1.8e-45 | 49.44 | (-)-germacrene D synthase OS=Vitis vinifera OX=29760 GN=VIT_19s0014g04930 PE=1 S... | [more] |
F6M8H4 | 4.0e-45 | 48.88 | Probable sesquiterpene synthase OS=Santalum album OX=35974 GN=SesquiTPS1 PE=3 SV... | [more] |