Lag0017778 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0017778
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Description(-)-germacrene D synthase-like
Locationchr5: 8608534 .. 8609237 (-)
RNA-Seq ExpressionLag0017778
SyntenyLag0017778
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAGGCTATGTAAAGCTTATTTTATGGAAGCTAAATGGTTTCATCAAGGGAATGTGCCAACAATGGAAGAGTATATGAAAGTTGCCACTATATCTGGCACCTATTATGTTTTTGCTTCGACTTTATTCCTTGGTATGAGAGTTACTTCCAAAGAGGTTTTCCAATGGGTTAAGAGTGAACCCATGCTTCTTCAAGCAACGGCAGTAATTGGCAGACTCATGAATGATATAACTTCCCACAAGGTACACAAGAATTAAAAAAAAAAATTGTATTAATATCGTTAAATCCTATTTAATTGAGGTCTTTTTATAATGTTTTTGTTTTTACTTTTCTATCTTTTTAAATTAAATTATAAGCAATTTTGAAAAGCATATTTTAAGTTTCGATCATATCCCAATTTGATTAATTATAGTTTGAACAAGAGAGAGGTCATGTTGTTTCTGCTGTTGAATGCTATATGAAGCAATATGGAGAATTTGAAGAAAAGGCCCTGGCTGAACTAGAAAAGCAAGTTGTTAAAGCATGGAAAGATGTAACAGAAGACTACATAAAATCTACCAGGATTCCAAACGTGATCCTTGTACGCATGCTAAACATTGCTCGAGTCACAGACCTCTTTTATAAGGAGGAGGATGGTTACACAATGGTTGATGGAGCTACCAAGCACTTCATTACCTTTATGCTCGTAGATCCTGTGTGA

mRNA sequence

ATGAAAAGGCTATGTAAAGCTTATTTTATGGAAGCTAAATGGTTTCATCAAGGGAATGTGCCAACAATGGAAGAGTATATGAAAGTTGCCACTATATCTGGCACCTATTATGTTTTTGCTTCGACTTTATTCCTTGGTATGAGAGTTACTTCCAAAGAGGTTTTCCAATGGGTTAAGAGTGAACCCATGCTTCTTCAAGCAACGGCAGTAATTGGCAGACTCATGAATGATATAACTTCCCACAAGTTTGAACAAGAGAGAGGTCATGTTGTTTCTGCTGTTGAATGCTATATGAAGCAATATGGAGAATTTGAAGAAAAGGCCCTGGCTGAACTAGAAAAGCAAGTTGTTAAAGCATGGAAAGATGTAACAGAAGACTACATAAAATCTACCAGGATTCCAAACGTGATCCTTGTACGCATGCTAAACATTGCTCGAGTCACAGACCTCTTTTATAAGGAGGAGGATGGTTACACAATGGTTGATGGAGCTACCAAGCACTTCATTACCTTTATGCTCGTAGATCCTGTGTGA

Coding sequence (CDS)

ATGAAAAGGCTATGTAAAGCTTATTTTATGGAAGCTAAATGGTTTCATCAAGGGAATGTGCCAACAATGGAAGAGTATATGAAAGTTGCCACTATATCTGGCACCTATTATGTTTTTGCTTCGACTTTATTCCTTGGTATGAGAGTTACTTCCAAAGAGGTTTTCCAATGGGTTAAGAGTGAACCCATGCTTCTTCAAGCAACGGCAGTAATTGGCAGACTCATGAATGATATAACTTCCCACAAGTTTGAACAAGAGAGAGGTCATGTTGTTTCTGCTGTTGAATGCTATATGAAGCAATATGGAGAATTTGAAGAAAAGGCCCTGGCTGAACTAGAAAAGCAAGTTGTTAAAGCATGGAAAGATGTAACAGAAGACTACATAAAATCTACCAGGATTCCAAACGTGATCCTTGTACGCATGCTAAACATTGCTCGAGTCACAGACCTCTTTTATAAGGAGGAGGATGGTTACACAATGGTTGATGGAGCTACCAAGCACTTCATTACCTTTATGCTCGTAGATCCTGTGTGA

Protein sequence

MKRLCKAYFMEAKWFHQGNVPTMEEYMKVATISGTYYVFASTLFLGMRVTSKEVFQWVKSEPMLLQATAVIGRLMNDITSHKFEQERGHVVSAVECYMKQYGEFEEKALAELEKQVVKAWKDVTEDYIKSTRIPNVILVRMLNIARVTDLFYKEEDGYTMVDGATKHFITFMLVDPV
Homology
BLAST of Lag0017778 vs. NCBI nr
Match: XP_022143456.1 ((-)-germacrene D synthase-like isoform X1 [Momordica charantia])

HSP 1 Score: 258.1 bits (658), Expect = 5.7e-65
Identity = 124/178 (69.66%), Postives = 146/178 (82.02%), Query Frame = 0

Query: 1   MKRLCKAYFMEAKWFHQGNVPTMEEYMKVATISGTYYVFASTLFLGM-RVTSKEVFQWVK 60
           MKR C+AY +EAKWFH+G+VP+MEEYM+VA +S  YY+FAS  FLGM  V SKE FQWV 
Sbjct: 379 MKRQCRAYLVEAKWFHKGHVPSMEEYMEVAIVSAAYYLFASVSFLGMGDVASKEAFQWVM 438

Query: 61  SEPMLLQATAVIGRLMNDITSHKFEQERGHVVSAVECYMKQYGEFEEKALAELEKQVVKA 120
           S+PMLL AT VIGRL+NDI SHKFEQERGHV SAVECYMKQY   EE+A+ ELEKQV+KA
Sbjct: 439 SDPMLLNATGVIGRLVNDIASHKFEQERGHVASAVECYMKQYEVSEEEAVGELEKQVIKA 498

Query: 121 WKDVTEDYIKSTRIPNVILVRMLNIARVTDLFYKEEDGYTMVDGATKHFITFMLVDPV 178
           WKD+TEDY+KSTR PN I+  + N+AR++DLFYKE DGYT  DG T+ FIT +L DPV
Sbjct: 499 WKDITEDYMKSTRFPNAIVACVTNVARLSDLFYKEGDGYTFPDGETRRFITSILKDPV 556

BLAST of Lag0017778 vs. NCBI nr
Match: XP_022143458.1 ((-)-germacrene D synthase-like isoform X3 [Momordica charantia])

HSP 1 Score: 258.1 bits (658), Expect = 5.7e-65
Identity = 124/178 (69.66%), Postives = 146/178 (82.02%), Query Frame = 0

Query: 1   MKRLCKAYFMEAKWFHQGNVPTMEEYMKVATISGTYYVFASTLFLGM-RVTSKEVFQWVK 60
           MKR C+AY +EAKWFH+G+VP+MEEYM+VA +S  YY+FAS  FLGM  V SKE FQWV 
Sbjct: 279 MKRQCRAYLVEAKWFHKGHVPSMEEYMEVAIVSAAYYLFASVSFLGMGDVASKEAFQWVM 338

Query: 61  SEPMLLQATAVIGRLMNDITSHKFEQERGHVVSAVECYMKQYGEFEEKALAELEKQVVKA 120
           S+PMLL AT VIGRL+NDI SHKFEQERGHV SAVECYMKQY   EE+A+ ELEKQV+KA
Sbjct: 339 SDPMLLNATGVIGRLVNDIASHKFEQERGHVASAVECYMKQYEVSEEEAVGELEKQVIKA 398

Query: 121 WKDVTEDYIKSTRIPNVILVRMLNIARVTDLFYKEEDGYTMVDGATKHFITFMLVDPV 178
           WKD+TEDY+KSTR PN I+  + N+AR++DLFYKE DGYT  DG T+ FIT +L DPV
Sbjct: 399 WKDITEDYMKSTRFPNAIVACVTNVARLSDLFYKEGDGYTFPDGETRRFITSILKDPV 456

BLAST of Lag0017778 vs. NCBI nr
Match: XP_038903578.1 (LOW QUALITY PROTEIN: (-)-germacrene D synthase-like [Benincasa hispida])

HSP 1 Score: 253.8 bits (647), Expect = 1.1e-63
Identity = 118/178 (66.29%), Postives = 149/178 (83.71%), Query Frame = 0

Query: 1   MKRLCKAYFMEAKWFHQGNVPTMEEYMKVATISGTYYVFASTLFLGM-RVTSKEVFQWVK 60
           MKR C+AYFMEAKWF++G +PTMEEYMKVA IS  YY+FAS  FL +  + S+EVF+W +
Sbjct: 315 MKRQCRAYFMEAKWFNEGYIPTMEEYMKVALISAAYYLFASVSFLALGNIASREVFEWAQ 374

Query: 61  SEPMLLQATAVIGRLMNDITSHKFEQERGHVVSAVECYMKQYGEFEEKALAELEKQVVKA 120
           ++PMLL+AT VIGRL+NDI SHKFEQ+RGHV SA+ECYMK+YG  EE+AL +L+K+V +A
Sbjct: 375 TDPMLLKATGVIGRLLNDIASHKFEQKRGHVASAIECYMKEYGVSEEEALTKLDKEVERA 434

Query: 121 WKDVTEDYIKSTRIPNVILVRMLNIARVTDLFYKEEDGYTMVDGATKHFITFMLVDPV 178
           WKDVT+DYIKS++ PNVIL  +LN+AR++DLFYKE DGYT  DG TK FIT +L+ PV
Sbjct: 435 WKDVTKDYIKSSKFPNVILDCVLNVARLSDLFYKEGDGYTFADGETKQFITLLLIHPV 492

BLAST of Lag0017778 vs. NCBI nr
Match: XP_022143530.1 (valencene synthase-like isoform X2 [Momordica charantia])

HSP 1 Score: 251.9 bits (642), Expect = 4.1e-63
Identity = 122/178 (68.54%), Postives = 144/178 (80.90%), Query Frame = 0

Query: 1   MKRLCKAYFMEAKWFHQGNVPTMEEYMKVATISGTYYVFASTLFLGM-RVTSKEVFQWVK 60
           MKR C+AYF EAKWF++G VPTMEEYM+VA+IS +Y++FA+  FLGM  V S EVFQW K
Sbjct: 301 MKRQCRAYFTEAKWFYEGYVPTMEEYMEVASISASYHLFAAASFLGMGDVASNEVFQWAK 360

Query: 61  SEPMLLQATAVIGRLMNDITSHKFEQERGHVVSAVECYMKQYGEFEEKALAELEKQVVKA 120
           S+P+LL AT VIGRLMNDI SHKFEQERGHV SAVECYMKQYG  E +A+ ELEKQV+KA
Sbjct: 361 SDPILLSATGVIGRLMNDIVSHKFEQERGHVASAVECYMKQYGVSEGEAIHELEKQVIKA 420

Query: 121 WKDVTEDYIKSTRIPNVILVRMLNIARVTDLFYKEEDGYTMVDGATKHFITFMLVDPV 178
           WKD+ EDY+K TR PN IL  ++N+ R++D FYKEEDGYT  +G T  FIT ML DPV
Sbjct: 421 WKDIIEDYMKCTRFPNAILSCVMNVDRLSDFFYKEEDGYTFPNGETNRFITSMLKDPV 478

BLAST of Lag0017778 vs. NCBI nr
Match: XP_022143529.1 ((-)-germacrene D synthase-like isoform X1 [Momordica charantia])

HSP 1 Score: 251.9 bits (642), Expect = 4.1e-63
Identity = 122/178 (68.54%), Postives = 144/178 (80.90%), Query Frame = 0

Query: 1   MKRLCKAYFMEAKWFHQGNVPTMEEYMKVATISGTYYVFASTLFLGM-RVTSKEVFQWVK 60
           MKR C+AYF EAKWF++G VPTMEEYM+VA+IS +Y++FA+  FLGM  V S EVFQW K
Sbjct: 374 MKRQCRAYFTEAKWFYEGYVPTMEEYMEVASISASYHLFAAASFLGMGDVASNEVFQWAK 433

Query: 61  SEPMLLQATAVIGRLMNDITSHKFEQERGHVVSAVECYMKQYGEFEEKALAELEKQVVKA 120
           S+P+LL AT VIGRLMNDI SHKFEQERGHV SAVECYMKQYG  E +A+ ELEKQV+KA
Sbjct: 434 SDPILLSATGVIGRLMNDIVSHKFEQERGHVASAVECYMKQYGVSEGEAIHELEKQVIKA 493

Query: 121 WKDVTEDYIKSTRIPNVILVRMLNIARVTDLFYKEEDGYTMVDGATKHFITFMLVDPV 178
           WKD+ EDY+K TR PN IL  ++N+ R++D FYKEEDGYT  +G T  FIT ML DPV
Sbjct: 494 WKDIIEDYMKCTRFPNAILSCVMNVDRLSDFFYKEEDGYTFPNGETNRFITSMLKDPV 551

BLAST of Lag0017778 vs. ExPASy Swiss-Prot
Match: F6M8H5 (Probable sesquiterpene synthase OS=Santalum austrocaledonicum OX=293154 GN=SesquiTPS PE=3 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.2e-46
Identity = 89/178 (50.00%), Postives = 122/178 (68.54%), Query Frame = 0

Query: 1   MKRLCKAYFMEAKWFHQGNVPTMEEYMKVATISGTYYVFASTLFLGM-RVTSKEVFQWVK 60
           MK+L + Y  EAKW H+  VPT +EYM VA ++  Y    +  +LGM  + SKE F W+ 
Sbjct: 383 MKKLVEGYMDEAKWCHEKYVPTFQEYMSVALVTSGYTFLTTISYLGMGEIASKEAFDWLF 442

Query: 61  SEPMLLQATAVIGRLMNDITSHKFEQERGHVVSAVECYMKQYGEFEEKALAELEKQVVKA 120
           S P +++A+  +GRLM+D  SHKFEQERGHV S +ECYMKQYG  EE+A  E  K++VKA
Sbjct: 443 SHPPVIEASESVGRLMDDTRSHKFEQERGHVASGIECYMKQYGVTEEEARDEFRKRLVKA 502

Query: 121 WKDVTEDYIKSTRIPNVILVRMLNIARVTDLFYKEEDGYTMVDGATKHFITFMLVDPV 178
           WKD+ E+ ++  R+P  +L+R+LN+ RV D+ YK EDGYT V  A K  I  +L+DP+
Sbjct: 503 WKDINEECLRPYRVPKPLLMRILNLTRVIDVIYKNEDGYTHVKKAMKDNIASLLIDPM 560

BLAST of Lag0017778 vs. ExPASy Swiss-Prot
Match: F6M8H7 (Probable sesquiterpene synthase OS=Santalum murrayanum OX=453085 GN=STPS PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.1e-46
Identity = 89/178 (50.00%), Postives = 121/178 (67.98%), Query Frame = 0

Query: 1   MKRLCKAYFMEAKWFHQGNVPTMEEYMKVATISGTYYVFASTLFLGM-RVTSKEVFQWVK 60
           MK + + Y  EAKW H+  VPT +EYM VA ++  Y    +  +LGM  + SKE F W+ 
Sbjct: 383 MKTIVEGYMDEAKWCHEKYVPTFQEYMSVALVTSGYTFLTTISYLGMGEIASKEAFDWLF 442

Query: 61  SEPMLLQATAVIGRLMNDITSHKFEQERGHVVSAVECYMKQYGEFEEKALAELEKQVVKA 120
           S P +++A+  +GRLM+D+ SHKFEQERGHV S +ECYMKQYG  EE+A  E  K++VKA
Sbjct: 443 SHPPVIEASESVGRLMDDMRSHKFEQERGHVASGIECYMKQYGVTEEEAHDEFRKRLVKA 502

Query: 121 WKDVTEDYIKSTRIPNVILVRMLNIARVTDLFYKEEDGYTMVDGATKHFITFMLVDPV 178
           WKD+ E+ ++  R+P  +L R+LN+ RV D+ YK EDGYT V  A K  I  +L+DPV
Sbjct: 503 WKDINEECLRPYRVPKPLLTRILNLTRVIDVIYKNEDGYTHVKKAMKDNIASLLIDPV 560

BLAST of Lag0017778 vs. ExPASy Swiss-Prot
Match: B5A435 (Sesquiterpene synthase OS=Santalum album OX=35974 PE=1 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.1e-46
Identity = 90/178 (50.56%), Postives = 122/178 (68.54%), Query Frame = 0

Query: 1   MKRLCKAYFMEAKWFHQGNVPTMEEYMKVATISGTYYVFASTLFLGM-RVTSKEVFQWVK 60
           MK+L + Y  EAKW H+  VPT EEYM VA ++  Y    +  +LGM  + SKE F W+ 
Sbjct: 380 MKKLVEGYMDEAKWCHEKYVPTFEEYMPVALVTSGYTFLTTISYLGMGEIASKEAFDWLF 439

Query: 61  SEPMLLQATAVIGRLMNDITSHKFEQERGHVVSAVECYMKQYGEFEEKALAELEKQVVKA 120
           S P +++A+  + RLM+D+ SHKFEQERGHV S +ECYMKQYG  EE+A  E  KQ+VKA
Sbjct: 440 SHPPVIEASESVCRLMDDMRSHKFEQERGHVASGIECYMKQYGVTEEEAHDEFRKQLVKA 499

Query: 121 WKDVTEDYIKSTRIPNVILVRMLNIARVTDLFYKEEDGYTMVDGATKHFITFMLVDPV 178
           WKD+ E+ ++  R+P  +L+R+LN+ RV D+ YK EDGYT V  A K  I  +L+DP+
Sbjct: 500 WKDINEECLRPYRVPKPLLMRILNLTRVIDVIYKNEDGYTHVKKAMKDNIASLLIDPM 557

BLAST of Lag0017778 vs. ExPASy Swiss-Prot
Match: Q6Q3H3 ((-)-germacrene D synthase OS=Vitis vinifera OX=29760 GN=VIT_19s0014g04930 PE=1 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.8e-45
Identity = 88/178 (49.44%), Postives = 123/178 (69.10%), Query Frame = 0

Query: 1   MKRLCKAYFMEAKWFHQGNVPTMEEYMKVATISGTYYVFASTLFLGM-RVTSKEVFQWVK 60
           MK   +AY+ EAKW     +PTMEEYM VA ++  Y + A+T F+GM    +KE F W+ 
Sbjct: 378 MKNQVRAYYEEAKWLQVQQIPTMEEYMPVALVTSAYSMLATTSFVGMGDAVTKESFDWIF 437

Query: 61  SEPMLLQATAVIGRLMNDITSHKFEQERGHVVSAVECYMKQYGEFEEKALAELEKQVVKA 120
           S+P +++A+A++ RLM+D+  HKFEQ+RGHV SAVECYMKQ+G  E++   E  + V +A
Sbjct: 438 SKPKIVRASAIVCRLMDDMVFHKFEQKRGHVASAVECYMKQHGASEQETPNEFPQPVREA 497

Query: 121 WKDVTEDYIKSTRIPNVILVRMLNIARVTDLFYKEEDGYTMVDGATKHFITFMLVDPV 178
           WKD+ E+ +  T +P  IL+R+LN+ARV D+ YK EDGYT      K F+T ML+DPV
Sbjct: 498 WKDINEECLIPTAVPMPILMRVLNLARVIDVIYKNEDGYTHFGAVLKDFVTSMLIDPV 555

BLAST of Lag0017778 vs. ExPASy Swiss-Prot
Match: F6M8H4 (Probable sesquiterpene synthase OS=Santalum album OX=35974 GN=SesquiTPS1 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 4.0e-45
Identity = 87/178 (48.88%), Postives = 121/178 (67.98%), Query Frame = 0

Query: 1   MKRLCKAYFMEAKWFHQGNVPTMEEYMKVATISGTYYVFASTLFLGM-RVTSKEVFQWVK 60
           MK+L + Y  EAKW H+  VPT EEYM VA ++  Y    +  +LGM  + SKE F W+ 
Sbjct: 380 MKKLVEGYMDEAKWCHEKYVPTFEEYMSVALVTSGYTFLTTMSYLGMGEIASKEAFDWLF 439

Query: 61  SEPMLLQATAVIGRLMNDITSHKFEQERGHVVSAVECYMKQYGEFEEKALAELEKQVVKA 120
           S P +++A+  +GRLM+D+ SHKFE+ERGHV S +ECYMKQY   EE+A  E  K++VKA
Sbjct: 440 SHPPVIEASESVGRLMDDMRSHKFERERGHVASGIECYMKQYSVTEEEAYDEFCKRLVKA 499

Query: 121 WKDVTEDYIKSTRIPNVILVRMLNIARVTDLFYKEEDGYTMVDGATKHFITFMLVDPV 178
           WKD+ E+ ++   +P  +L+R+LN+ RV D+ YK EDGYT V  A K  I  +L+DP+
Sbjct: 500 WKDINEECLRPYHVPKPLLMRILNLTRVIDVIYKNEDGYTHVKKAMKDNIASLLIDPM 557

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022143456.15.7e-6569.66(-)-germacrene D synthase-like isoform X1 [Momordica charantia][more]
XP_022143458.15.7e-6569.66(-)-germacrene D synthase-like isoform X3 [Momordica charantia][more]
XP_038903578.11.1e-6366.29LOW QUALITY PROTEIN: (-)-germacrene D synthase-like [Benincasa hispida][more]
XP_022143530.14.1e-6368.54valencene synthase-like isoform X2 [Momordica charantia][more]
XP_022143529.14.1e-6368.54(-)-germacrene D synthase-like isoform X1 [Momordica charantia][more]
Match NameE-valueIdentityDescription
F6M8H51.2e-4650.00Probable sesquiterpene synthase OS=Santalum austrocaledonicum OX=293154 GN=Sesqu... [more]
F6M8H72.1e-4650.00Probable sesquiterpene synthase OS=Santalum murrayanum OX=453085 GN=STPS PE=3 SV... [more]
B5A4352.1e-4650.56Sesquiterpene synthase OS=Santalum album OX=35974 PE=1 SV=1[more]
Q6Q3H31.8e-4549.44(-)-germacrene D synthase OS=Vitis vinifera OX=29760 GN=VIT_19s0014g04930 PE=1 S... [more]
F6M8H44.0e-4548.88Probable sesquiterpene synthase OS=Santalum album OX=35974 GN=SesquiTPS1 PE=3 SV... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008949Isoprenoid synthase domain superfamilyGENE3D1.10.600.10Farnesyl Diphosphate Synthasecoord: 1..177
e-value: 7.9E-62
score: 211.2
IPR008949Isoprenoid synthase domain superfamilySUPERFAMILY48576Terpenoid synthasescoord: 1..177
IPR005630Terpene synthase, metal-binding domainPFAMPF03936Terpene_synth_Ccoord: 1..122
e-value: 4.1E-41
score: 141.1
NoneNo IPR availablePANTHERPTHR31225:SF111TERPENE SYNTHASE 2-RELATEDcoord: 2..160
NoneNo IPR availablePANTHERPTHR31225OS04G0344100 PROTEIN-RELATEDcoord: 2..160

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0017778.1Lag0017778.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016102 diterpenoid biosynthetic process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0010333 terpene synthase activity
molecular_function GO:0016829 lyase activity