Lag0017748 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0017748
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUBX domain-containing protein
Locationchr5: 8171087 .. 8172105 (-)
RNA-Seq ExpressionLag0017748
SyntenyLag0017748
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGCTTCATCGATGGTACTCCTCCTCCTCCCAGATTCTTGGATGCTGCGGGATCTCAGGTAAACCCCATATTTCCCTTATGGAAAAAATATAATCGGACATTAATGAGCTGGATATATTCTTCGTTGAATGAAGATAAAATAGGTGAAATTATCGGTTGTACTACTGCTTTCGAAATTTGGGATCATCTGCGAAATGTTTATGAATCTTCCTCTACTGCTCGAATTATGGGTTTACGTTCTCAGTTGCAAAAAATTCGTAAAGATGGTTTGACTGTTTCTCAATACCTCGCCCAAATTAAAGACATAGCGATAAGTTTTCAGCCATTGGTGAACCCCTGTCCTATAGAGATCATTTAGGTTATATTTTGGAGGGATTAGGAATGGAATATGATCAGTTTGTCACGTCGATATAGAACCGTAATGACTGCCCCTCTCTAGCTGATGTCTGCATCTTGTTGTTGGCTTACGAGGCTCGTTTAGAGAAGCAATCGACCTTTGACCACATGAATATGGTTCAAGCTAATCTTGCTAACCTATCCTTCCCCTCTAACCAAAAGCGCAACCAGTCCAGTCGACCGTCTAATCCCCCTAAACATACCCCTGTTCCCAAGCCTTCAGTTCATTTCCCTTTTCTCAACCCTTCTCCTCTTCGAATCCTTGTGTATTAGGTCGCCCCAGTCCTCTCCTCGTCTAAATTGTTGGCCACCTCCAACTCATCCAATCGGCCTCAATGCCAAATTTGTGGAAAATTAGGCCATACTGCTCTTGTCTGTTATAACAGACACAATCCCTTATACCAAGCTAATCCTCCCCCACCGAATCCACCTCAAGCCTTTTTCAACCAACTCCAACAGCCTTCTAGCTCCAGTACACAATCCTCTATCTCGTCTAATTCCATACCAGCAACTCATCACCCTGATGAAGCTTGGTTTATGGATTCGGGAGCCACTCATCACATGACCCCCGACATCAACAACATCCAACATCCATCTCCTTACTATGGACAAGAATAG

mRNA sequence

ATGGAGAGCTTCATCGATGGTACTCCTCCTCCTCCCAGATTCTTGGATGCTGCGGGATCTCAGAACCGTAATGACTGCCCCTCTCTAGCTGATGTCTGCATCTTGTTGTTGGCTTACGAGGCTCGTTTAGAGAAGCAATCGACCTTTGACCACATGAATATGGTTCAAGCTAATCTTGCTAACCTATCCTTCCCCTCTAACCAAAAGCGCAACCAGTCCAGTCGACCGTCTAATCCCCCTAAACATACCCCTGTTCCCAAGCCTTCAGTTCATTTCCCTTTTCTCAACCCTTCTCCTCTTCGAATCCTTGTACACAATCCCTTATACCAAGCTAATCCTCCCCCACCGAATCCACCTCAAGCCTTTTTCAACCAACTCCAACAGCCTTCTAGCTCCAGTACACAATCCTCTATCTCGTCTAATTCCATACCAGCAACTCATCACCCTGATGAAGCTTGGTTTATGGATTCGGGAGCCACTCATCACATGACCCCCGACATCAACAACATCCAACATCCATCTCCTTACTATGGACAAGAATAG

Coding sequence (CDS)

ATGGAGAGCTTCATCGATGGTACTCCTCCTCCTCCCAGATTCTTGGATGCTGCGGGATCTCAGAACCGTAATGACTGCCCCTCTCTAGCTGATGTCTGCATCTTGTTGTTGGCTTACGAGGCTCGTTTAGAGAAGCAATCGACCTTTGACCACATGAATATGGTTCAAGCTAATCTTGCTAACCTATCCTTCCCCTCTAACCAAAAGCGCAACCAGTCCAGTCGACCGTCTAATCCCCCTAAACATACCCCTGTTCCCAAGCCTTCAGTTCATTTCCCTTTTCTCAACCCTTCTCCTCTTCGAATCCTTGTACACAATCCCTTATACCAAGCTAATCCTCCCCCACCGAATCCACCTCAAGCCTTTTTCAACCAACTCCAACAGCCTTCTAGCTCCAGTACACAATCCTCTATCTCGTCTAATTCCATACCAGCAACTCATCACCCTGATGAAGCTTGGTTTATGGATTCGGGAGCCACTCATCACATGACCCCCGACATCAACAACATCCAACATCCATCTCCTTACTATGGACAAGAATAG

Protein sequence

MESFIDGTPPPPRFLDAAGSQNRNDCPSLADVCILLLAYEARLEKQSTFDHMNMVQANLANLSFPSNQKRNQSSRPSNPPKHTPVPKPSVHFPFLNPSPLRILVHNPLYQANPPPPNPPQAFFNQLQQPSSSSTQSSISSNSIPATHHPDEAWFMDSGATHHMTPDINNIQHPSPYYGQE
Homology
BLAST of Lag0017748 vs. NCBI nr
Match: XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia])

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-14
Identity = 81/201 (40.30%), Postives = 104/201 (51.74%), Query Frame = 0

Query: 15  LDAAGSQ---------NRNDCPSLADVCILLLAYEARLEKQSTFDHMNMVQANLANLSFP 74
           LD  GS+         NR D PSL DV  LLLAYEARL+KQ+T D +N+ QANL NLS  
Sbjct: 180 LDGLGSEYNAFVTSIHNRADSPSLEDVRSLLLAYEARLDKQNTVDQLNIAQANLVNLSLQ 239

Query: 75  SNQKR----------NQSSRPSNP----PKHTPVPKP-SVHFPFLNPSPLRI-------L 134
            N KR           + S P++P       + + KP SVH     PS  +I       L
Sbjct: 240 HNSKRPPPKFSFPNHYKHSFPNSPISAAQSQSILGKPQSVHKWPPKPSSSKIQCQICGKL 299

Query: 135 VHNP---LYQANPPPPN-PPQAFFNQLQQPSSSSTQSSISSNSIPATHHPDEAWFMDSGA 181
            H+     ++ N    N  PQA ++ + QPS +   S           HPDE+WFMDSGA
Sbjct: 300 GHSAAVCYHRTNIAYHNASPQALYHHV-QPSPTHPSSG------HEFQHPDESWFMDSGA 359

BLAST of Lag0017748 vs. NCBI nr
Match: GFY82848.1 (hypothetical protein Acr_02g0010880 [Actinidia rufa])

HSP 1 Score: 80.1 bits (196), Expect = 2.1e-11
Identity = 62/172 (36.05%), Postives = 86/172 (50.00%), Query Frame = 0

Query: 27  PSLADVCILLLAYEARLEKQSTFDHMNMVQANLANL-------------SFPSNQK---- 86
           PS+ +V  LLL+Y+ARLE+QS  D ++ +QANLANL             SFP++      
Sbjct: 110 PSIEEVHSLLLSYDARLERQSATDTLSSLQANLANLTYQKPKFKNPSTNSFPNSNSYSHP 169

Query: 87  RNQSSRPS-NPPKHTPVPKPSVHFPFLNPSPLRILVHNPLYQANPPPPNPPQAFFNQLQQ 146
           R Q+  PS +P   +P P+P                H       PPPP P    FN    
Sbjct: 170 RGQNRNPSYSPNPSSPKPRPRCQICLKPGHTANKCYHRTNLNYQPPPPPPRN--FNAYIT 229

Query: 147 PSSSSTQSSISSNSIPATHHPDEAWFMDSGATHHMTPDINNIQHPSPYYGQE 181
           P+ S + S  S+    A+  PD +W+MDSGA+HH TP +N +   SPY G +
Sbjct: 230 PNPSISTS--SNQPASASSLPDSSWYMDSGASHHFTPYLNMLDSASPYTGMD 277

BLAST of Lag0017748 vs. NCBI nr
Match: XP_022148871.1 (uncharacterized protein LOC111017438 [Momordica charantia])

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-10
Identity = 69/202 (34.16%), Postives = 95/202 (47.03%), Query Frame = 0

Query: 21  QNRNDCPSLADVCILLLAYEARLEKQSTFDHMNMVQANLANLSF------------PSNQ 80
           QNR+D  +L DV  LLLAY+ RLEKQ++ D +N+VQAN+ANL              PS  
Sbjct: 64  QNRSDMXTLEDVRTLLLAYDYRLEKQNSVDQLNVVQANVANLQLNRQSGHTRNHRVPSQH 123

Query: 81  ---------------KRNQSSRPSNPPKHTPVPKPSVH----FPFLNPSPLRILVHNPLY 140
                          K NQ+S+P  PP       P V     F   + +       N  Y
Sbjct: 124 SPRPFNFKTQPGLLGKPNQNSQPPWPPSQQSPRNPKVQCQICFKLGHTTSKCYHRANLQY 183

Query: 141 QANPPPPNP--PQAFFNQLQQPSSSSTQSSISSNSIPATHH---------PDEAWFMDSG 181
           + N  P N   P A F+ +   SS   QS+ ++N  P  +          PD+ W+MDSG
Sbjct: 184 KLNFFPTNQPNPHALFHHVNSSSSQFQQSNPTANVPPTPNPFSFPNLIVIPDDLWYMDSG 243

BLAST of Lag0017748 vs. NCBI nr
Match: XP_038891713.1 (uncharacterized protein LOC120081111 [Benincasa hispida])

HSP 1 Score: 63.5 bits (153), Expect = 2.1e-06
Identity = 43/101 (42.57%), Postives = 58/101 (57.43%), Query Frame = 0

Query: 21  QNRNDCPSLADVCILLLAYEARLEKQSTFDHMNMVQANLANLSFPSNQKRNQSSRPSNPP 80
           QN  D  S+ DV  LLL+YEA+LEKQ+  DH+N+ QA L+ LSF  N KRN + RP   P
Sbjct: 63  QNHVDNLSVEDVWSLLLSYEAQLEKQNAIDHLNIAQAYLSKLSFQHNSKRN-ALRPF--P 122

Query: 81  KHTPVPKPSVHFPFLNPSPLRILVHNPLYQANPPPPNPPQA 122
            H+ +  PS +F  + PS    +   P +    PP  PP +
Sbjct: 123 NHSSLILPSPNFSPILPSTSNSVHARPSFNKKWPPSKPPSS 160

BLAST of Lag0017748 vs. NCBI nr
Match: GFZ12741.1 (UBX domain-containing protein [Actinidia rufa])

HSP 1 Score: 56.6 bits (135), Expect = 2.5e-04
Identity = 45/125 (36.00%), Postives = 59/125 (47.20%), Query Frame = 0

Query: 58  NLANLSFPSNQKRNQSSRPSNPPKHTPVPKPSVHFPFLNPSPLRILVH--NPLYQANPPP 117
           N  + S P  Q RN S  P NP   +P P+P                H  N  YQ  PPP
Sbjct: 249 NSNSYSHPRGQNRNPSYSP-NP--SSPKPRPRCQICLKPGHTANKCYHHTNLNYQPPPPP 308

Query: 118 PNPPQAFFNQLQQPSSSSTQSSISSNSIPATHHPDEAWFMDSGATHHMTPDINNIQHPSP 177
           P    A+       S+SS Q ++   S+     PD +W+MDSGA+HH TPD+N +   SP
Sbjct: 309 PRNFNAYITPNPSLSTSSNQPAMLLLSL-----PDSSWYMDSGASHHFTPDLNMLDSASP 365

Query: 178 YYGQE 181
           Y G +
Sbjct: 369 YTGMD 365

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022155181.11.2e-1440.30uncharacterized protein LOC111022315 [Momordica charantia][more]
GFY82848.12.1e-1136.05hypothetical protein Acr_02g0010880 [Actinidia rufa][more]
XP_022148871.11.4e-1034.16uncharacterized protein LOC111017438 [Momordica charantia][more]
XP_038891713.12.1e-0642.57uncharacterized protein LOC120081111 [Benincasa hispida][more]
GFZ12741.12.5e-0436.00UBX domain-containing protein [Actinidia rufa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 65..93
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 123..146
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..180
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 162..180
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..93

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0017748.1Lag0017748.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding