Lag0017637 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017637
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	60S ribosomal protein L36
Location	chr5: 6257419 .. 6257767 (+)
RNA-Seq Expression	Lag0017637
Synteny	Lag0017637

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAAAAGAGTTCTCTTTGTCCAGAGCTTGATCGACGAAGTTACTGGTTTTGCCCCATATGAGAAAAGAATTGATGAGGTTCTAAAAGTTCGAAAAGACAAGTGTGCTTTGAAGGTAGCCAGGAGAAAACTTGGAACTCAGAAAAGAGCTAAGAAGTATGAGGAGATGTCCAACGTTCTAAGAAAAATGAGGTAATCTATTAATCAATTTTTGAAGGCAAATTTGTTGCTTTTATTTAAACTTAGGGGTTGGACCATGTTCTGCTTATGTGAAAGTCAGAAGGTTCACATTTGGATATGTTGTGAGTCCTAAAGGTTACGAGGATGTAGTATGGTTAGCATTCTAG

mRNA sequence

ATGAGTAAAAGAGTTCTCTTTGTCCAGAGCTTGATCGACGAAGTTACTGGTTTTGCCCCATATGAGAAAAGAATTGATGAGGTTCTAAAAGTTCGAAAAGACAAGTGTGCTTTGAAGGTAGCCAGGAGAAAACTTGGAACTCAGAAAAGAGCTAAGAAGTATGAGGAGATGTCCAACGTTCTAAGAAAAATGAGAAGGTTCACATTTGGATATGTTGTGAGTCCTAAAGGTTACGAGGATGTAGTATGGTTAGCATTCTAG

Coding sequence (CDS)

ATGAGTAAAAGAGTTCTCTTTGTCCAGAGCTTGATCGACGAAGTTACTGGTTTTGCCCCATATGAGAAAAGAATTGATGAGGTTCTAAAAGTTCGAAAAGACAAGTGTGCTTTGAAGGTAGCCAGGAGAAAACTTGGAACTCAGAAAAGAGCTAAGAAGTATGAGGAGATGTCCAACGTTCTAAGAAAAATGAGAAGGTTCACATTTGGATATGTTGTGAGTCCTAAAGGTTACGAGGATGTAGTATGGTTAGCATTCTAG

Protein sequence

MSKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRAKKYEEMSNVLRKMRRFTFGYVVSPKGYEDVVWLAF

Homology

[Close]

BLAST of Lag0017637 vs. NCBI nr
Match: XP_022554777.1 (60S ribosomal protein L36-1 isoform X1 [Brassica napus])

HSP 1 Score: 95.5 bits (236), Expect = 2.4e-16
Identity = 56/84 (66.67%), Postives = 65/84 (77.38%), Query Frame = 0


Query: 2   SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRAK-KYEEMSNV 61
           SKR LF++SLI EV GFAPYEKRI E+LKV KDK ALKVA+RKLGT KRAK K EEMS+V
Sbjct: 37  SKRTLFIRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSV 96

Query: 62  LRKMRRFTFGYVVSPKGYEDVVWL 85
           LRKMR   F + +S    +DV+ L
Sbjct: 97  LRKMRYMIFYFDLSFYYSQDVILL 120

[Close]

BLAST of Lag0017637 vs. NCBI nr
Match: CAG7874331.1 (unnamed protein product, partial [Brassica rapa])

HSP 1 Score: 94.4 bits (233), Expect = 5.3e-16
Identity = 54/80 (67.50%), Postives = 62/80 (77.50%), Query Frame = 0


Query: 2   SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRAK-KYEEMSNV 61
           SKR LF++SLI EV GFAPYEKRI E+LKV KDK ALKVA+RKLGT KRAK K EEMS+V
Sbjct: 37  SKRTLFIRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSV 96

Query: 62  LRKMRRFTFGYVVSPKGYED 81
           LRKMR     Y + P+  +D
Sbjct: 97  LRKMR-----YTIQPQSLKD 111

[Close]

BLAST of Lag0017637 vs. NCBI nr
Match: XP_026379716.1 (60S ribosomal protein L36-2-like [Papaver somniferum] >XP_026379717.1 60S ribosomal protein L36-2-like [Papaver somniferum] >XP_026411254.1 60S ribosomal protein L36-2-like [Papaver somniferum] >RZC57050.1 hypothetical protein C5167_004352 [Papaver somniferum])

HSP 1 Score: 94.0 bits (232), Expect = 6.9e-16
Identity = 54/65 (83.08%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 2   SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRA-KKYEEMSNV 61
           SKRVLFV+SLI EV GFAPYEKRI E+LKV KDK ALKVA+RKLGT KRA KK EEMSNV
Sbjct: 37  SKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNV 96

Query: 62  LRKMR 66
           LRKMR
Sbjct: 97  LRKMR 101

[Close]

BLAST of Lag0017637 vs. NCBI nr
Match: KAB5532471.1 (hypothetical protein DKX38_019141 [Salix brachista])

HSP 1 Score: 94.0 bits (232), Expect = 6.9e-16
Identity = 54/65 (83.08%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 2   SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRAK-KYEEMSNV 61
           SKRVLFV+SLI EV GFAPYEKRI E+LKV KDK ALKVA+RKLGT KRAK K EEMSNV
Sbjct: 86  SKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSNV 145

Query: 62  LRKMR 66
           LRKMR
Sbjct: 146 LRKMR 150

[Close]

BLAST of Lag0017637 vs. NCBI nr
Match: KAB5525490.1 (hypothetical protein DKX38_023239 [Salix brachista])

HSP 1 Score: 94.0 bits (232), Expect = 6.9e-16
Identity = 54/65 (83.08%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 2   SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRA-KKYEEMSNV 61
           SKRVLFV+SLI EV GFAPYEKRI E+LKV KDK ALKVA+RKLGT KRA KK EEMSNV
Sbjct: 45  SKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNV 104

Query: 62  LRKMR 66
           LRKMR
Sbjct: 105 LRKMR 109

[Close]

BLAST of Lag0017637 vs. ExPASy Swiss-Prot
Match: O80929 (60S ribosomal protein L36-1 OS=Arabidopsis thaliana OX=3702 GN=RPL36A PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.2e-16
Identity = 48/65 (73.85%), Postives = 54/65 (83.08%), Query Frame = 0


Query: 2   SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRAK-KYEEMSNV 61
           SKR +F++ LI EV G APYEKRI E+LKV KDK ALKVA+RKLGT KRAK K EEMS+V
Sbjct: 37  SKRTIFIRKLIREVAGMAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSV 96

Query: 62  LRKMR 66
           LRKMR
Sbjct: 97  LRKMR 101

[Close]

BLAST of Lag0017637 vs. ExPASy Swiss-Prot
Match: Q9M352 (60S ribosomal protein L36-2 OS=Arabidopsis thaliana OX=3702 GN=RPL36B PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.2e-16
Identity = 48/65 (73.85%), Postives = 55/65 (84.62%), Query Frame = 0


Query: 2   SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRAK-KYEEMSNV 61
           SKR +F+++LI EV G APYEKRI E+LKV KDK ALKVA+RKLGT KRAK K EEMS+V
Sbjct: 37  SKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSV 96

Query: 62  LRKMR 66
           LRKMR
Sbjct: 97  LRKMR 101

[Close]

BLAST of Lag0017637 vs. ExPASy Swiss-Prot
Match: Q9LZ57 (60S ribosomal protein L36-3 OS=Arabidopsis thaliana OX=3702 GN=RPL36C PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.2e-16
Identity = 48/65 (73.85%), Postives = 55/65 (84.62%), Query Frame = 0


Query: 2  SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRAK-KYEEMSNV 61
          SKR +F+++LI EV G APYEKRI E+LKV KDK ALKVA+RKLGT KRAK K EEMS+V
Sbjct: 33 SKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSV 92

Query: 62 LRKMR 66
          LRKMR
Sbjct: 93 LRKMR 97

[Close]

BLAST of Lag0017637 vs. ExPASy Swiss-Prot
Match: Q9LRB8 (60S ribosomal protein L36 OS=Ulva compressa OX=63659 GN=RL36 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.4e-11
Identity = 39/71 (54.93%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 1   MSKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRA-KKYEEMSN 60
           +S+RV  V++++ EV G+APYE+R+ E+LKV KDK ALK+ +RKLGT  R  KK EEM+ 
Sbjct: 30  LSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKRALKMCKRKLGTHMRGKKKREEMAG 89

Query: 61  VLRKMRRFTFG 71
           VLRKM+  + G
Sbjct: 90  VLRKMQAASKG 100

[Close]

BLAST of Lag0017637 vs. ExPASy Swiss-Prot
Match: Q66KU4 (60S ribosomal protein L36 OS=Xenopus laevis OX=8355 GN=rpl36 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-10
Identity = 37/67 (55.22%), Postives = 49/67 (73.13%), Query Frame = 0


Query: 1  MSKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRAK-KYEEMSN 60
          ++K   FV+ +I EV GFAPYE+R  E+LKV KDK ALK  ++++GT  RAK K EE+SN
Sbjct: 33 LTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRIGTHIRAKRKREELSN 92

Query: 61 VLRKMRR 67
          VL  MR+
Sbjct: 93 VLAAMRK 99

The following BLAST results are available for this feature:

BLAST of Lag0017637 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022554777.1	2.4e-16	66.67	60S ribosomal protein L36-1 isoform X1 [Brassica napus]	[more]
CAG7874331.1	5.3e-16	67.50	unnamed protein product, partial [Brassica rapa]	[more]
XP_026379716.1	6.9e-16	83.08	60S ribosomal protein L36-2-like [Papaver somniferum] >XP_026379717.1 60S riboso...	[more]
KAB5532471.1	6.9e-16	83.08	hypothetical protein DKX38_019141 [Salix brachista]	[more]
KAB5525490.1	6.9e-16	83.08	hypothetical protein DKX38_023239 [Salix brachista]	[more]

BLAST of Lag0017637 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80929	3.2e-16	73.85	60S ribosomal protein L36-1 OS=Arabidopsis thaliana OX=3702 GN=RPL36A PE=3 SV=1	[more]
Q9M352	4.2e-16	73.85	60S ribosomal protein L36-2 OS=Arabidopsis thaliana OX=3702 GN=RPL36B PE=3 SV=1	[more]
Q9LZ57	4.2e-16	73.85	60S ribosomal protein L36-3 OS=Arabidopsis thaliana OX=3702 GN=RPL36C PE=3 SV=1	[more]
Q9LRB8	2.4e-11	54.93	60S ribosomal protein L36 OS=Ulva compressa OX=63659 GN=RL36 PE=3 SV=1	[more]
Q66KU4	1.5e-10	55.22	60S ribosomal protein L36 OS=Xenopus laevis OX=8355 GN=rpl36 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000509	Ribosomal protein L36e	PFAM	PF01158	Ribosomal_L36e	coord: 2..66 e-value: 6.2E-23 score: 80.8
IPR000509	Ribosomal protein L36e	PANTHER	PTHR10114	60S RIBOSOMAL PROTEIN L36	coord: 2..70
IPR038097	Ribosomal protein L36e domain superfamily	GENE3D	1.10.10.1760	60S ribosomal protein L36	coord: 2..69 e-value: 3.2E-26 score: 93.2
None	No IPR available	PANTHER	PTHR10114:SF20	60S RIBOSOMAL PROTEIN L36	coord: 2..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0017637.1	Lag0017637.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome