Lag0017529 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017529
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr5: 4951292 .. 4953638 (+)
RNA-Seq Expression	Lag0017529
Synteny	Lag0017529

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGGGAGGAGGAGGAGTCGGGGGTGGCGGCGACGGCGGGATGAGGAGGAGCCGGTGGTTCCAGAAAAGAAAAATGAAGGGGAAAGAGGAGAGGGGGCACACGTGGAGGAGAGGGGAAAGAGAAGAGATGGGTTTTTCTTTTTCATTTTTTATTATTTTATTAAACATGTAATAATATTATTATTATATTATTTTAATTTTAAAAATTAATATTTTATTATTAAACGTTGCCACGTCAGCACCGTTAAAAAAATTAACGGTTGAGGGACTAAATTGAACTATTTTCGGAACAGTAAGGACTTGATTGTTCGATTTTGAAACCTAGGGACCTATTGGAAACTGACCTGAAACATGGAGGACCAAAAAGGTATTTTACCCATAAAAAATAAAAAATATATTAATATATTTATTTTTAAATATTTTTATATAAAAAATAAAAATAATAATTTTTTAATTAAAATAATAGTGTCACGTCAGCAACCGTTAACATTTAACAGAAAAATTGAAGATAGGGACCAAAATGCTCCTTATATCAAACCTTAGGGGTATTTTTGTTGAGTTTGAAAACTCGGGGACCAAAATGAAACCTAACCCAAACCTCAGGGACCAAAAATGTATTTTTCCCTAAATTAAATATATATGTGTGTGTGTGTGTGTGGGCAGTTGCATAGATGGTAAATTGGACCAAATTAATAGCAAATATAGCACAGTTGCAAACTAATTGTACAAGACTAAAAAGTTGTTGTCAGATTCTATCCGTGTCTATCACTGATAGACTCTGATTATTCAAAGTTTATCAGTGTCTATCACTAATAGACTTCGATTAATCAAAATCTATCAGTGACTATCACTGATCAAAGTCTATCAATGATAGTCACTTATAGATTTTGATTAACCAGAGTTTAACAGCGATAGACACTGATAGACTCTAAATAATCGGAGTCTATTAATAGACTGATAGATTCTGATTAATCAGAGTCTATTGCTGATAAACTCTGATAATCGAAGTCTATCAAATAGATTCTAATTAACCAGAGTCTATCAGTGTCTATTAGTAATATACTCTGATAGATTTTGCTATAACCACCGAAAATAAAGTAAATAATATTATCTTATTAAATCAAAAGTATCTATATCAAGATCAATCTCGGGGTACATCAAAGGCATATGGATATAAAGACTGATGGTTACCATTCAGTCGCTGTCAGGAGACAAACTTGGATCTCATCTATGTTGGTGCTTGGGCGATTTGGAATGATAGAAATCATGTGGTTCATAATCGTCCAATTCTGAGCATTGAAGCCAGATGTGCATAGATACATGATTATATAGTGGAGTTCAGAAAGGCGAACGAGGTTAGTGATTGCTCTAACGTGTCTGCACCTGCATTTCATGATATGATTGATAAAGGCGAGGAGACTATTATGCATATTGAGATAAGCCAGAGATCTGGTTTCGGGGTCGTCTATCGAGACAAGTAGGGTGGATTGAAGGCGGGATTATCTTTGCCTTCTCAAATTTGTACTACCCCTTTATGTGCAGAAGCGGGAGCAGTGCTTGAAGGCCTTCAGTTTGCTAGGAGATTAGAAGTGGATCGCGTGACGGTAATGTCTGATTCTCTATCACTTATCGAAGCCATTCAGGGGAGTGGTTTAGTTGATTTATGCATTATTTCTATTATAGAGGATATTAAAGATACCATGTCCTCCTTCAATAGGATTAATTTTTGTCATGTTCGTCGTTCGTATAACAGACTGGCCCATAAGTTGGCCTAAGTAGGTCTTTATTCTTCTCTGCAGGAATGGACATCAAACTTTCTTGACTGAATCTCTCACCTGATACGTCGGGAGAGTTATCTCTTTGTAACCCCTTGGGGTGATCCTTCTTTATAATGATATTGCGAAATTATCGGAAAAAAAAAAAAAAGTATCTATATCAAGATCAAGTAATTTGGAGGAAAAAAACATCCAAAAATGAAATTTGAATTAAATCAGTAAAATTTAAGATAAGTATTGTTTTATTTTAACTTAAATATTAACTTTTTTTCAAGTTGTTCACACGTAACTTCGGGGATGGAGACACGTGGAATAAATAATATATAGAATTGATGTTTGTATGCGTGTGGGCGTACAATCTCTAACTTTAATCCTCTGATTCTCTCTCTTATGTGTGTGAGTGTGTTTCACTTGAAGGCTGGAACGTTTGATCTCAAGTCTGAAACTTCAATGGATTCTTGAAGCTTGAAGTCTTCCAGTCCTGAAAGAGTCTTCAATCTTCAAGAAGTGTTGAAGAGTCTGAAACTTCAATGGATTCCTGAAGAGTCTTTGATCTTCAAGGAGTGTTGA

mRNA sequence

ATGACGGGAGGAGGAGGAGTCGGGGGTGGCGGCGACGGCGGGATGAGGAGGAGCCGGTGGTTCCAGAAAAGAAAAATGAAGGGGAAAGAGGAGAGGGGGCACACGTGGAGGAGAGGGGAAAGAGAAGAGATGGGACTTGATTGTTCGATTTTGAAACCTAGGGACCTATTGGAAACTGACCTGAAACATGGAGGACCAAAAAGAAAGGCGAACGAGGTTAGTGATTGCTCTAACGTGTCTGCACCTGCATTTCATGATATGATTGATAAAGGCGAGGAGACTATTATGCATATTGAGATAAGCCAGAGATCTGAAGCGGGAGCAGTGCTTGAAGGCCTTCAGTTTGCTAGGAGATTAGAAGTGGATCGCGTGACGGTAATGTCTGATTCTCTATCACTTATCGAAGCCATTCAGGGGAGTGGTTTAGTTGATTTATGCATTATTTCTATTATAGAGGATATTAAAGATACCATCTTGAAGTCTTCCAGTCCTGAAAGAGTCTTCAATCTTCAAGAAGTGTTGAAGAGTCTGAAACTTCAATGGATTCCTGAAGAGTCTTTGATCTTCAAGGAGTGTTGA

Coding sequence (CDS)

ATGACGGGAGGAGGAGGAGTCGGGGGTGGCGGCGACGGCGGGATGAGGAGGAGCCGGTGGTTCCAGAAAAGAAAAATGAAGGGGAAAGAGGAGAGGGGGCACACGTGGAGGAGAGGGGAAAGAGAAGAGATGGGACTTGATTGTTCGATTTTGAAACCTAGGGACCTATTGGAAACTGACCTGAAACATGGAGGACCAAAAAGAAAGGCGAACGAGGTTAGTGATTGCTCTAACGTGTCTGCACCTGCATTTCATGATATGATTGATAAAGGCGAGGAGACTATTATGCATATTGAGATAAGCCAGAGATCTGAAGCGGGAGCAGTGCTTGAAGGCCTTCAGTTTGCTAGGAGATTAGAAGTGGATCGCGTGACGGTAATGTCTGATTCTCTATCACTTATCGAAGCCATTCAGGGGAGTGGTTTAGTTGATTTATGCATTATTTCTATTATAGAGGATATTAAAGATACCATCTTGAAGTCTTCCAGTCCTGAAAGAGTCTTCAATCTTCAAGAAGTGTTGAAGAGTCTGAAACTTCAATGGATTCCTGAAGAGTCTTTGATCTTCAAGGAGTGTTGA

Protein sequence

MTGGGGVGGGGDGGMRRSRWFQKRKMKGKEERGHTWRRGEREEMGLDCSILKPRDLLETDLKHGGPKRKANEVSDCSNVSAPAFHDMIDKGEETIMHIEISQRSEAGAVLEGLQFARRLEVDRVTVMSDSLSLIEAIQGSGLVDLCIISIIEDIKDTILKSSSPERVFNLQEVLKSLKLQWIPEESLIFKEC

Homology

The following BLAST results are available for this feature:

BLAST of Lag0017529 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0017529 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 101..140 e-value: 2.9E-5 score: 23.9
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 80..188 e-value: 4.1E-6 score: 28.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..38

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0017529.1	Lag0017529.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity