Lag0017461 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0017461
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCCHC-type domain-containing protein
Locationchr5: 3970950 .. 3971516 (+)
RNA-Seq ExpressionLag0017461
SyntenyLag0017461
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCTGTGAGTGCGAGCGATGTGGATGGTTTGGCTGATCAGTGGAATAAGATGGGCCTATCAGAGGAGGAAGCGATTGTGATACCTGTGCCGGAGAATGTTCCGTTACTAGATGATTCGACAGTACAGGTTTGTGCGGTGGGTAAGGTTATGACGAATCGTTTTGTGAATCCAGATGCGTTACGGAGGGTGATGATGTCTGTCTGGAATGTCCACCGATCGACGAGGATTGAAGCTCTCGGCGACAACATATTTGTAGTCCAGTTTTGCTCAGTGAGTGAGAAGCGCCGAATACTGAGCACGGGCCCATGGAATTTCGATAAAGCAGTGTTTGTACTGGTCTCCCCTACAGGTTCGGATAGTCCAGCACTGATTGATTTTTCCAGGTGTGCTTTCTGGGTCCATATTAATCGAGTTCCTTTCAATTTTCTTACGCCTGCGATGGCGAGTGCGTTGGGGAATATTATTGGGCTGGTTGTGGATGTGGGGGGGGGGTGGAGGTGGGGACTGGTTGGGGCCAGTCATGAGGGTACGGGTAATGTTGAATATCACGAAGCCCCTTAG

mRNA sequence

ATGGCCTCTGTGAGTGCGAGCGATGTGGATGGTTTGGCTGATCAGTGGAATAAGATGGGCCTATCAGAGGAGGAAGCGATTGTGATACCTGTGCCGGAGAATGTTCCGTTACTAGATGATTCGACAGTACAGGTTTGTGCGGTGGGTAAGGTTATGACGAATCGTTTTGTGAATCCAGATGCGTTACGGAGGGTGATGATGTCTGTCTGGAATGTCCACCGATCGACGAGGATTGAAGCTCTCGGCGACAACATATTTGTAGTCCAGTTTTGCTCAGTGAGTGAGAAGCGCCGAATACTGAGCACGGGCCCATGGAATTTCGATAAAGCAGTGTTTGTACTGGTCTCCCCTACAGGTTCGGATAGTCCAGCACTGATTGATTTTTCCAGGTGTGCTTTCTGGGTCCATATTAATCGAGTTCCTTTCAATTTTCTTACGCCTGCGATGGCGAGTGCGTTGGGGAATATTATTGGGCTGGTTGTGGATGTGGGGGGGGGGTGGAGGTGGGGACTGGTTGGGGCCAGTCATGAGGGTACGGGTAATGTTGAATATCACGAAGCCCCTTAG

Coding sequence (CDS)

ATGGCCTCTGTGAGTGCGAGCGATGTGGATGGTTTGGCTGATCAGTGGAATAAGATGGGCCTATCAGAGGAGGAAGCGATTGTGATACCTGTGCCGGAGAATGTTCCGTTACTAGATGATTCGACAGTACAGGTTTGTGCGGTGGGTAAGGTTATGACGAATCGTTTTGTGAATCCAGATGCGTTACGGAGGGTGATGATGTCTGTCTGGAATGTCCACCGATCGACGAGGATTGAAGCTCTCGGCGACAACATATTTGTAGTCCAGTTTTGCTCAGTGAGTGAGAAGCGCCGAATACTGAGCACGGGCCCATGGAATTTCGATAAAGCAGTGTTTGTACTGGTCTCCCCTACAGGTTCGGATAGTCCAGCACTGATTGATTTTTCCAGGTGTGCTTTCTGGGTCCATATTAATCGAGTTCCTTTCAATTTTCTTACGCCTGCGATGGCGAGTGCGTTGGGGAATATTATTGGGCTGGTTGTGGATGTGGGGGGGGGGTGGAGGTGGGGACTGGTTGGGGCCAGTCATGAGGGTACGGGTAATGTTGAATATCACGAAGCCCCTTAG

Protein sequence

MASVSASDVDGLADQWNKMGLSEEEAIVIPVPENVPLLDDSTVQVCAVGKVMTNRFVNPDALRRVMMSVWNVHRSTRIEALGDNIFVVQFCSVSEKRRILSTGPWNFDKAVFVLVSPTGSDSPALIDFSRCAFWVHINRVPFNFLTPAMASALGNIIGLVVDVGGGWRWGLVGASHEGTGNVEYHEAP
Homology
BLAST of Lag0017461 vs. NCBI nr
Match: XP_022158119.1 (uncharacterized protein LOC111024676, partial [Momordica charantia])

HSP 1 Score: 155.6 bits (392), Expect = 4.2e-34
Identity = 71/155 (45.81%), Postives = 101/155 (65.16%), Query Frame = 0

Query: 9   VDGLADQWNKMGLSEEEAIVIPVPENVPLLDDSTVQVCAVGKVMTNRFVNPDALRRVMMS 68
           +D + + W    L+ EE     V    P+L    +Q+C VGK+ T++ ++  AL  VM  
Sbjct: 1   MDEITELWENFNLTNEEEETFIVDNQQPILTAENIQLCGVGKLHTSKRISAKALASVMKQ 60

Query: 69  VWNVHRSTRIEALGDNIFVVQFCSVSEKRRILSTGPWNFDKAVFVLVSPTGSDSPALIDF 128
           VW +H STRIEA G NI+V+ F ++ EK+R+LS+GPW FDK++FVLVSPT +D P  +DF
Sbjct: 61  VWKIHESTRIEAAGLNIYVIAFKTMVEKKRVLSSGPWTFDKSLFVLVSPTAADKPLDVDF 120

Query: 129 SRCAFWVHINRVPFNFLTPAMASALGNIIGLVVDV 164
             CAFWV I+ +PF +LT  MA  LG+ +G V +V
Sbjct: 121 RFCAFWVQIHCIPFEYLTRDMAKLLGDRLGKVEEV 155

BLAST of Lag0017461 vs. NCBI nr
Match: XP_022149484.1 (uncharacterized protein LOC111017902 [Momordica charantia])

HSP 1 Score: 142.5 bits (358), Expect = 3.7e-30
Identity = 65/163 (39.88%), Postives = 103/163 (63.19%), Query Frame = 0

Query: 9   VDGLADQWNKMGLSEEEAIVIPVPENVPLLDDSTVQVCAVGKVMTNRFVNPDALRRVMMS 68
           +D + D W     + +E   + +    P+L    V++C V K+ T++ ++ +A+R VM S
Sbjct: 1   MDEITDLWEHFKSTNDENETVTIDRGKPILTADNVKLCVVAKLHTSKRISAEAIRSVMKS 60

Query: 69  VWNVHRSTRIEALGDNIFVVQFCSVSEKRRILSTGPWNFDKAVFVLVSPTGSDSPALIDF 128
           VW VH STR E LG NI+V+ F S+SEK R+LS+GPW F+K++ VL SPT ++ P  ++F
Sbjct: 61  VWRVHNSTRFEPLGMNIYVILFKSLSEKSRVLSSGPWTFNKSLLVLTSPTATNQPLDMNF 120

Query: 129 SRCAFWVHINRVPFNFLTPAMASALGNIIGLVVDVGG----GW 168
           + CAFW+ I+ +PF  ++  MA+ LG  +G V ++ G    GW
Sbjct: 121 NFCAFWIQIHNIPFECISTEMANILGAKLGDVEEIEGDGADGW 163

BLAST of Lag0017461 vs. NCBI nr
Match: XP_022156711.1 (uncharacterized protein LOC111023555 [Momordica charantia])

HSP 1 Score: 132.9 bits (333), Expect = 2.9e-27
Identity = 63/157 (40.13%), Postives = 92/157 (58.60%), Query Frame = 0

Query: 9   VDGLADQWNKMGLSEEEAIVIPVPENVPLLDDSTVQVCAVGKVMTNRFVNPDALRRVMMS 68
           +D +   W    L +EE   I +    P+L    +Q+CAVGK+  ++ +  +A   VM  
Sbjct: 1   MDDITKLWENFTLIKEEEDTIVIDNQKPILTVDNIQLCAVGKLHPSKRITVEAFASVMKQ 60

Query: 69  VWNVHRSTRIEALGDNIFVVQFCSVSEKRRILSTGPWNFDKAVFVLVSPTGSDSPALIDF 128
           VW +H STRIE  G NI+V+ F +++EK R+ S GPW FDK++ +LV  T ++ P  ID 
Sbjct: 61  VWKIHNSTRIETAGLNIYVIAFKTMAEKIRVFSLGPWTFDKSLLILVPTTAANKPLDIDI 120

Query: 129 SRCAFWVHINRVPFNFLTPAMASALGNIIGLVVDVGG 166
           S CAFWV I+ + F  +T  MA  LG  +G V +V G
Sbjct: 121 SLCAFWVQIHYITFECMTKDMAKFLGARLGEVEEVDG 157

BLAST of Lag0017461 vs. NCBI nr
Match: XP_022155933.1 (uncharacterized protein LOC111022932 [Momordica charantia])

HSP 1 Score: 131.3 bits (329), Expect = 8.5e-27
Identity = 62/163 (38.04%), Postives = 99/163 (60.74%), Query Frame = 0

Query: 9   VDGLADQWNKMGLSEEEAIVIPVPENVPLLDDSTVQVCAVGKVMTNRFVNPDALRRVMMS 68
           +D + + W    L++E+   I +    PL+    VQ  AVGK+ T++ ++ +A R VM S
Sbjct: 1   MDEITELWENFTLTKEKEETIIIDSEKPLMTPENVQRYAVGKLHTSKRISVEAFRSVMKS 60

Query: 69  VWNVHRSTRIEALGDNIFVVQFCSVSEKRRILSTGPWNFDKAVFVLVSPTGSDSPALIDF 128
           +W VH ST IE  G N++V+ F S++EK R+L++GPW+F+ ++ VL SPT +D P  ++F
Sbjct: 61  LWKVHESTHIETAGMNLYVIVFKSMAEKNRVLTSGPWSFETSLLVLTSPTATDQPRDMNF 120

Query: 129 SRCAFWVHINRVPFNFLTPAMASALGNIIGLV--VDVGGGWRW 170
           +  A W+ I+ +PF  +   MA  LG  IG V  +D  G + W
Sbjct: 121 NFFALWIQIHCIPFQCMIKDMAKFLGTRIGEVEEIDCNGSYEW 163

BLAST of Lag0017461 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 122.5 bits (306), Expect = 3.9e-24
Identity = 60/167 (35.93%), Postives = 93/167 (55.69%), Query Frame = 0

Query: 8   DVDGLADQWNKMGL-SEEEAIVIPVPENVPLLDDSTVQVCAVGKVMTNRFVNPDALRRVM 67
           D + L   W K  L SEE+ I + V  +   + +  +    VGK++  R ++ D L RV+
Sbjct: 2   DHENLLADWQKFKLTSEEDEIAMDVDVDAVKMAEQGLAYSLVGKLLAKRIISADVLSRVL 61

Query: 68  MSVWNVHRSTRIEALGDNIFVVQFCSVSEKRRILSTGPWNFDKAVFVLVSPTGSDSPALI 127
           +  W V     +E++G N+F+  FC   +  R++ TGPW FDKA+ VL  P  S + + +
Sbjct: 62  LLAWKVEHQLTVESIGKNLFLFHFCRECDMNRVMKTGPWFFDKALIVLQKPCSSKNISEL 121

Query: 128 DFSRCAFWVHINRVPFNFLTPAMASALGNIIGLVVDVG---GGWRWG 171
           +F+R AFW+H+  +P ++L   MA  LGN IG  VDV     G+ WG
Sbjct: 122 EFNRVAFWIHLFDLPMSWLNKTMAIRLGNAIGNFVDVDCNEKGFSWG 168

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158119.14.2e-3445.81uncharacterized protein LOC111024676, partial [Momordica charantia][more]
XP_022149484.13.7e-3039.88uncharacterized protein LOC111017902 [Momordica charantia][more]
XP_022156711.12.9e-2740.13uncharacterized protein LOC111023555 [Momordica charantia][more]
XP_022155933.18.5e-2738.04uncharacterized protein LOC111022932 [Momordica charantia][more]
XP_022156185.13.9e-2435.93uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025558Domain of unknown function DUF4283PFAMPF14111DUF4283coord: 43..163
e-value: 3.2E-18
score: 65.7

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0017461.1Lag0017461.1mRNA