Lag0016923 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0016923
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	chr12: 42405691 .. 42412263 (-)
RNA-Seq Expression	Lag0016923
Synteny	Lag0016923

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGCTGAATTATGGAACCCATCTGAGGGGGCATGGAACTTACATCTTAGAAGGCATCTTCGGGACTATGAAATTCTGGAATGGGCTTTATTATCACACCAGCTATCACCATTTTCCTTTAGAGATGTGGCTGACTCATGGACATGGAATCTTAGTGATAAAGGTGTCTTCTCCACAGGATCCCTTACCATAAATTTGGCTTCTCTTTCTTCACCCATAAACAATGACTTCTACAGCAATCTATGGAAGGGACCTATGCCAAAAAAAGTCAAGTTCTTTATATGGGAACTCAGCCACTCTTGTATAAATACAACAGACACTATTCAGAGGAGATTTCCAGGATCATCGCTCTCCCCCAGCCGCTGCAGCATGTGTGGTAAGGATGGTGAAACACAAATCCATCTTTTCAGCATCTGTGAGTTTGCCACTACATTCTGGGACTATATTCAAACGGCTTTTGGATGGAAAAGGATACAAAGTTGCTATGGAGGAATTTTTTGTATGCATTTTTCTGGAATCTTTGGTTAGAAAGGAATGGCAGAATCTTCAATTCTAAATACCAGAATGTTCATGCCTTTATTGAATCAACAACCTATCTTGCTATGTATTGGAGTAGTTAGATCTCTTTTTTGTAATTATCCATTATCTTCCCTCATATCTCAATGGAGATCTTTATTGTAATTATCAATAGGCCCTTTTGTTTCTATTTCATACATCAATGAAATGGTTTTGTTTCCTATCCAAAAAAAAAAAATGAAAGGGCACCCTATTTTTTATTTAATTTCTCTTTTTCCCCAACAAATTTCCTTTCAAGTTTCACGCGTTTTCCCAATTTCTTTAACTCTCTCCCTCTTGTCTCGTCGTCTTCTTCAATCAAAGAGGCCCAAGCTCCTTCCTTTCATAGTGAAACTTTCATCTTCGTCTTCACTCTCAAACTCCTTGGACCAACACTGATAAATGGAAAATTATATTCATTGACCACATGATGAAGTTTTGGAAAAGAGTCCTTTGAAGGCGACTATAACATCCTGAAACAAAATACGATTGCTTTGACACATTGAAAGAAACCACTCGACTGTTTGCTAGCATGTAAAAGGTAAAAGCCATGGGCTTCTTACATTAATATTTCTCTTCTGGATGGGGCTGAGTACCCACTTAGACACAATGCAGTTGCTAAGTGCTAACTATGGCTTGTACCAAAGAGCAACAAGTCATCAAGTGATGTGACCACTCCGTTTAGCAATAAGAATGTAATTCCGTTACTTTATGCATACCAGCCCTAAGCAGAGAAACCTTTTCCCATCAAATTAGCTTTTGTCACTTTTATTATTTACTCGTGTTGCATAAAATAGTGTTAGGTATCCAAACTAAGAAAAACACCAAAACACTAATATATTGCAATATCGAAACGAAACTACAATATTATGATAGCCTTTTGAGAGGACTAACTCATGAGACAATACCCAAAATTCTTCACACCCTTCTAAGCCCCTAACTTACCTATTTATAACCAAGACACAACCAAGGCACCCTAGCTAATTACTATTATACCCTTACTACCATTCTACTACTATTCTCCATATATCCCTAACTAGTACTCTCACAATACTCCACCCTTAAACGACATCTTGTCCTCAAGGTGTGCTTCAAAACACAAACTTTTTTTTTAAACACAGAACCCTCGCTTCATATATTGCAATAAAAAACTTAGTGGGTTGTTGCTTCATCCACTGTGAGTGGTGGTTGACGGCAATTGGTCGCGATTCCGACAAATGGCGTCAGTTGCTAGCAAAAGCTGGCAGTGGTTGGCAATGACGGATGGTCGAGATGGTTGGTGGTGTAAGCTTGCCCAATGAAGATGAAGACCGCATGAGTAAAAGGTTGAACATTAGCTGCTAGGATGGATCTTTTCATGTGAAAATTGGATGTTAAGTAGGGCTTAAAATAAAGGAAAACCCAGCCCACAACCCAGTCTTGTTAAACCGTCCCCTTTTCTATCTTTGGAAGGAAATTGACCTCACTTTTTTTTCTTGAATCTAGCTCATTAAGCAGCCTACCATCCCCCTTTCTTCTGGATTCTTCTCCCAACTGATGTTCCACAAGATCAGGGTGAGTTTCCCCCTTTTTTTCAAACACAGGAAAACAACTTTTTTTTAAACCTGACTCTGATACCAATTGATTAGGTATCCAAACTAAGAAAAACACCAATACAACTAATATATTGCAATATCAAAACAGAACTACAATATTACGATCAAGGTTGTTAACTCGTGAAACGGAATACGTATCGAAATCAAATTTTAGTGTATCGTGTATCGTAACGTATCGTGTATCGTAAGTTTCAATTTGAAAAATAATATTTAAATATAAATTAAAAATAGGGGTTCCCTTAGGTAGGGAGAAGGAGAATAGATATTTGAAAAAAAGAAAGAAAATGAAAGGGCACAAATATGAGAGTGAATATTGGTATTGAGTACAGATGGCAGTTTGCATGACATTTGCTGAGTCTATTTAATTTCTTGGAAGGGGAATTAATAATATGCATCGGAAAAAAAGAAAGAAAATGGGAGGGCAGTGTATTTTTTTTATTTAACTTCTCTTTCTTCCGAATAAATTTCCTTCCACTTTTTTCCTAATTTCTTTTAACTCTCTCAGTCTCTCTCTTGTCTCTTCAACTCTTCGTCTTCTTCAATATTCACAGACCAACTCTCCAGCCTTTCACTCTCCCTCTCATTCATCTTCTTCATTCAAACAAAACCCAACAACCCACAACCTTTTTTCATCTTCTTCAAGTACGAACTTCTTCACGACGAGGGTTTCTTCTCCACCTCTCCACGCATGCTGGCGAACTTATTCGGCGCTGGCAAGTAATCCTAAACCCAAAATTGTAGGTATTTTGCAATTTTGTTTTTAGGTTTATTGATTTTTGAATCGAAACGTTTCGATTCTTACGATTCAGAAACGTGAATCGTACGAAACATGGAATTTCCGATTCAAAACCACGTTTTTAATCATTTTCCTCCCGTTTCGAGTTGTATCGTACGATACAAATCGTGTATCGTACGATTTTAATAACACTGATTACGATAGCCTTTCGAGAGAGCTAACTCTTTCCCAAAGTTCCACTATGAAACAATACCCAAAATTCTTTACACCCTTCTAAGACTCTAACTTACCTATTTATAACCAATACACAACCAAGACACCCTAGCTAATTACTATTATACCCTTACTACCATTCTACTACTATTCCCCATATATCCCTAACTAGTACTCTCACAAATAGAGGGTGATGCAAAGAGAATTTCGCTATAAAGAGCGAGTACTCCTAGAAAGAAGGGAATTTTTTCTTCCAGGTTAAGAACCTCTCTGTTTGCTTTTGATATTAGGGGGAAAAAAACAAGCCATCACTCCCTTTTGGGCTTTTTCAAAGGAATGAACAGAAATAATTCCAGAATTATCTAGGGTTGGCTATCTGCAGCCAATCCTACTTGATAGTCTCACATTTGCTAGTAAATTCAACAAATTACAATACTCAACTTCCTCCTCTATCTTCCTTAAGATTTCTTCTAACAACCACCAACCAAGAACTAGAACAAGAATCTCACATATCACACACTTTGCCTCTTTTTCTACAGATAACTCATATATATATTTGTGTGTATGTGTATATATATATATTGGAAATAAGATGCATAAAAGAAACTTGAAGTTTTTGTAGTTCTATTTTTCATTCAGCTACAAATAAAGATTACACTTACATAAAATACATAAAGGAAAGGCTAAAAAGGTAAATAAATCTAATTAATCCTAAACATTGGGGATTAAACAATGTAGTAAAAAATAATAAATCTAAACCTTCCTAAAGTTATTTACATCATTGCCAACTTGTTACAAAGTTCATTTGATTCTTTGATAAATGTTCGAAACAAACAAGAGATCTTCATTCTTTCTGACTCCCCCCGGGGGGCAACACTACTTTGTTTCATCCCACTAAATGAGATATTTTCTACTCATCCCTACATTCCCAAAAAATTCCACATATATTTTTTTTGAAGGCATTGCTTATCTAGAACCTTCAAGAGAAAGTTGCAAAAAAACCACCTGCAGTTTCACCAAGGTGTTTTGAAATCGTGTAGGAATGAGATTGTACTTTTAGAAAAAGTTCTAAAAAATTTATTCAGCAGGGACTTGAGTAAAAGATATTTACAGTGGCGTAGGAACTTGTGCCTTTAGATCTAACTTCATCTTTCAGTCTATGAATTATTTCTTTTTTTTTTTTTTAATCTTGCTTAGTTTTGAGGGTATCCAGGCATCTTGATTGCCCACATCATGCTATATTCTAATTGAAAATAAAAGCTCTATTTCTGATTAAAGTTACTTGAAGTGGATTACCAATTTTAAACTTTTTCTGCAAAGTTGGACAGATAACTTGAGTGAAATAATGTACTTTGTACTGAATATGTTCGGGATGGAGAGGTTGTGGATATTCCAGGTTTCTATAAAATTCTGAACAAATATTTAGGTGCATTGCAGGGTGCGGCTGTTATCTCAGCTGAATTAGGTGAATATGCTCGAGCAGCCTCTTTTCTTGAAGACTTGATAAAGGTTGGTTTTATTTTGGATTCAGAATATGGGATTTTCTCATTGATGTTGGTTTTAGGTGATATGATTATTATCGTTTATTCTTTATATAGGAGAAGTCAGATGATTCTGACATTTTCCGCTTGCTTGGGGAGGTCAAGTATAAACTTAAAGATTATAGTGGGAGTATTGCGGCATACAAGAGTTCCACAATGGTTAGTCTTCTCTAACAATTAGGAAAAGGATTTAGAAGGAATTTTTTCTCTCCTCATGCTCTCTCCCTCTCCCCTAACTGGCGATCTCCCTCCCCTTCACCTTCCCTCTTCCCTCCCCGTTAGTCTCTCTCCCCCTTTCCACAGTCGTTGTTGACACTTCCAAAGAGAGCGCAAGGAGGGAGAGGTAGAGGAAAGAGTGGAAGGAGAAAGAAAATTATTTTTTTATTTTTTATTTTTAATTGTCATCTCAAATTTCTTTTGGAGTAAGCTTGTAAACTTAGCCTATTTAAAGTCCAGTCAACTTTCTGTTTTGAGGTCTATTTAAAACCTATTTCTCAAACTCAAGTGTTAAAGTGTATCTTTTGAAAATTGAAGGACTAAAATGGCATATTAGTGAAAACTTAGGGGCCATATATAAGTGTAATTTTTCCTTGCATTCTTTTATCTGCATAAGGCATAAGATTGATCTAAATAATACATATTTGAGAGCAATAATAGACAGTAGAGTTATCCATGGTTAACAAATTTTATAAAAACATTCGTATCAACAAAGCTCAGAGAAACTTTTTAATAATTTTAGATAATGATATCATATTACATAATAATAGTTCATCTTAATTTTTATTTTATCCTTTAAATTTAAAGAGTATAAAAGTAAATATTTTTCATGCCAATATCCATATTTTATTTTTGTTAAGAAATTGAAATCTTTTCTATGTGGTTATGAAAAGCACATGAGGAGGATGTACAAGACCCATGCCTTATAATAAGGCTCGCTATTTCTTTCTTCTTTCTTCTTTTTTTTTTTTTTTGATAAAAAAGGAAACTTTCCGTCGAAGAAATGAAAAGAGACTAATGTTCAAAAGATACCGACTCTACAGAGGAATGAAATAAAGAAAGAAAATAACATTACAAATAAAAGATAAAACCATCCCAATTTAATCATATATCACTTAAAGAAAAGGTTGTAAAAAGTTTGGAGGGAGAAACAACATGAAGAAGCTTTAGGTTTTGTTAATTCAAATTGATCCTGCCATGGGAGATGTTTATCCCTAAAAAAAATTATAATTCCTTTTCAACGATAATTTTGAAATGATAGCTGCTATAGATTTTTGTATAGGATAATTTTATTTTTTTTATTAGTCTTTTATCTTTCAGCATATTTTTCATTATCCCTTCCATTAATAATTAGTTTTAGTTCAAACTTCTCTTATATATATATATATATATATATATATATATATATATATATTTTTTTTTTTTGAGTTCATCAACATTTGGGGGTGGGGGGATTCGAACCTCTGACGTCTTGGTTGAGGGTACATGCCAATTACCGCTGAGCTATGCTCGCTTTGGCTATTTACCCATTATTGTGTTCTCAGAAAAATAAGATAAATAATTTCTCCAAAAACAACATGGTATCAAAGTAAAACCCTAGGCATTGGAAACCCTCACTATCAAAAACTCTAGCCTTTGGAATCCTAGCAACTGGTTACCATCATCATCGCCACAGTCTCCTTCTGATGCGTCTCGTGGGTTTCAAGTCATTCACAGTCCTGGGTTTCAAGTTGTGGGTAGCAGTCGTTTGTCTTCCAATGTTGCAAATCTTCACAGTGGTCTTGTTCGTTGTTTGTTGTCACGTGGTTGTTGTTCGTGCTTCCTTCGACATTTTCCAACGGCGTTCGATCGTGGTTTGTTTATCACTCAAGTCGTCGCACTGCCTACTGCCAACGTCGGCCACACTGGTGGAGCTGAGAACCACTTTGAATAA

mRNA sequence

ATGATTGCTGAATTATGGAACCCATCTGAGGGGGCATGGAACTTACATCTTAGAAGGCATCTTCGGGACTATGAAATTCTGGAATGGGCTTTATTATCACACCAGCTATCACCATTTTCCTTTAGAGATGTGGCTGACTCATGGACATGGAATCTTAGTGATAAAGGTGTCTTCTCCACAGGATCCCTTACCATAAATTTGGCTTCTCTTTCTTCACCCATAAACAATGACTTCTACAGCAATCTATGGAAGGGACCTATGCCAAAAAAAGTCAAGTTCTTTATATGGGAACTCAGCCACTCTTGTATAAATACAACAGACACTATTCAGAGGAGATTTCCAGGATCATCGCTCTCCCCCAGCCGCTGCAGCATGTGTGGTAAGGATGGTGAAACACAAATCCATCTTTTCAGCATCTGTGCATTGCAGGGTGCGGCTGTTATCTCAGCTGAATTAGGTGAATATGCTCGAGCAGCCTCTTTTCTTGAAGACTTGATAAAGGAGAAGTCAGATGATTCTGACATTTTCCGCTTGCTTGGGGAGGTCAAGTATAAACTTAAAGATTATAGTGGGAGTATTGCGGCATACAAGAGTTCCACAATGGCATTGGAAACCCTCACTATCAAAAACTCTAGCCTTTGGAATCCTAGCAACTGGTTACCATCATCATCGCCACAGTCTCCTTCTGATGCGTCTCGTGGGTTTCAAGTCATTCACAGTCCTGGGTTTCAAGTTGTGGGTAGCAGTCGTTTGTCTTCCAATGTTGCAAATCTTCACAGTGGTCTTGTTCGTTGTTTGTTGTCACGTGGTTGTTGTTCGTGCTTCCTTCGACATTTTCCAACGGCGTTCGATCGTGGTTTGTTTATCACTCAAGTCGTCGCACTGCCTACTGCCAACGTCGGCCACACTGGTGGAGCTGAGAACCACTTTGAATAA

Coding sequence (CDS)

ATGATTGCTGAATTATGGAACCCATCTGAGGGGGCATGGAACTTACATCTTAGAAGGCATCTTCGGGACTATGAAATTCTGGAATGGGCTTTATTATCACACCAGCTATCACCATTTTCCTTTAGAGATGTGGCTGACTCATGGACATGGAATCTTAGTGATAAAGGTGTCTTCTCCACAGGATCCCTTACCATAAATTTGGCTTCTCTTTCTTCACCCATAAACAATGACTTCTACAGCAATCTATGGAAGGGACCTATGCCAAAAAAAGTCAAGTTCTTTATATGGGAACTCAGCCACTCTTGTATAAATACAACAGACACTATTCAGAGGAGATTTCCAGGATCATCGCTCTCCCCCAGCCGCTGCAGCATGTGTGGTAAGGATGGTGAAACACAAATCCATCTTTTCAGCATCTGTGCATTGCAGGGTGCGGCTGTTATCTCAGCTGAATTAGGTGAATATGCTCGAGCAGCCTCTTTTCTTGAAGACTTGATAAAGGAGAAGTCAGATGATTCTGACATTTTCCGCTTGCTTGGGGAGGTCAAGTATAAACTTAAAGATTATAGTGGGAGTATTGCGGCATACAAGAGTTCCACAATGGCATTGGAAACCCTCACTATCAAAAACTCTAGCCTTTGGAATCCTAGCAACTGGTTACCATCATCATCGCCACAGTCTCCTTCTGATGCGTCTCGTGGGTTTCAAGTCATTCACAGTCCTGGGTTTCAAGTTGTGGGTAGCAGTCGTTTGTCTTCCAATGTTGCAAATCTTCACAGTGGTCTTGTTCGTTGTTTGTTGTCACGTGGTTGTTGTTCGTGCTTCCTTCGACATTTTCCAACGGCGTTCGATCGTGGTTTGTTTATCACTCAAGTCGTCGCACTGCCTACTGCCAACGTCGGCCACACTGGTGGAGCTGAGAACCACTTTGAATAA

Protein sequence

MIAELWNPSEGAWNLHLRRHLRDYEILEWALLSHQLSPFSFRDVADSWTWNLSDKGVFSTGSLTINLASLSSPINNDFYSNLWKGPMPKKVKFFIWELSHSCINTTDTIQRRFPGSSLSPSRCSMCGKDGETQIHLFSICALQGAAVISAELGEYARAASFLEDLIKEKSDDSDIFRLLGEVKYKLKDYSGSIAAYKSSTMALETLTIKNSSLWNPSNWLPSSSPQSPSDASRGFQVIHSPGFQVVGSSRLSSNVANLHSGLVRCLLSRGCCSCFLRHFPTAFDRGLFITQVVALPTANVGHTGGAENHFE

Homology

[Close]

BLAST of Lag0016923 vs. NCBI nr
Match: KAA0037436.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 6.1e-22
Identity = 59/144 (40.97%), Postives = 75/144 (52.08%), Query Frame = 0


Query: 2   IAELWNPSEGAWNLHLRRHLRDYEILEWALLSHQLSPFSFRDVADSWTWNLSDKGVFSTG 61
           I ELW+P+   WNLH RR L D EI  W  L   L   +     ++  W  +DKG ++  
Sbjct: 609 IEELWDPNTNDWNLHPRRPLNDREIELWTNLKGILKILTLNGGKNNMIWTPNDKGTYTAA 668

Query: 62  SLTINLASLSSPIN---NDFYSNLWKGPMPKKVKFFIWELSHSCINTTDTIQRRFPGSSL 121
           S    L S     N    +FY  LWK  +PKK KFF+W L H  INTTD +Q+R P + L
Sbjct: 669 SAKRQLLSERPTPNLNERNFYETLWKSKLPKKGKFFMWSLFHESINTTDVLQKRLPNTYL 728

Query: 122 SPSRCSMCGKDGETQIHLFSICAL 143
            PSRC +   D E   H+F  C L
Sbjct: 729 QPSRCFLYKSDAEGINHIFISCHL 752

[Close]

BLAST of Lag0016923 vs. NCBI nr
Match: TYK00226.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 6.1e-22
Identity = 59/144 (40.97%), Postives = 75/144 (52.08%), Query Frame = 0


Query: 2   IAELWNPSEGAWNLHLRRHLRDYEILEWALLSHQLSPFSFRDVADSWTWNLSDKGVFSTG 61
           I ELW+P+   WNLH RR L D EI  W  L   L   +     ++  W  +DKG ++  
Sbjct: 584 IEELWDPNTNDWNLHPRRPLNDREIELWTNLKGILKILTLNGGKNNMIWTPNDKGTYTAA 643

Query: 62  SLTINLASLSSPIN---NDFYSNLWKGPMPKKVKFFIWELSHSCINTTDTIQRRFPGSSL 121
           S    L S     N    +FY  LWK  +PKK KFF+W L H  INTTD +Q+R P + L
Sbjct: 644 SAKRQLLSERPTPNLNERNFYETLWKSKLPKKGKFFMWSLFHESINTTDVLQKRLPNTYL 703

Query: 122 SPSRCSMCGKDGETQIHLFSICAL 143
            PSRC +   D E   H+F  C L
Sbjct: 704 QPSRCFLYKSDAEGINHIFISCHL 727

[Close]

BLAST of Lag0016923 vs. NCBI nr
Match: KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 115.2 bits (287), Expect = 1.0e-21
Identity = 61/143 (42.66%), Postives = 78/143 (54.55%), Query Frame = 0


Query: 2   IAELWNPSEGAWNLHLRRHLRDYEILEWALLSHQL-SPFSFRDVADSWTWNLSDKGVFST 61
           + +LWNPS   WN+H+ R LRD+E   W  +   L +P   R  +    W L+   +F T
Sbjct: 694 VKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKP-LWKLNSNNIFDT 753

Query: 62  GSLTINLASLS-SPIN--NDFYSNLWKGPMPKKVKFFIWELSHSCINTTDTIQRRFPGSS 121
            S+  +L+  S SP N     Y  LWK   PKK KFFIW L H CINT D +Q+R P  +
Sbjct: 754 ASIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWT 813

Query: 122 LSPSRCSMCGKDGETQIHLFSIC 141
           LSP+ C MC K  E   HLF  C
Sbjct: 814 LSPNWCYMCNKSQEDINHLFIHC 835

[Close]

BLAST of Lag0016923 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 115.2 bits (287), Expect = 1.0e-21
Identity = 61/143 (42.66%), Postives = 78/143 (54.55%), Query Frame = 0


Query: 2   IAELWNPSEGAWNLHLRRHLRDYEILEWALLSHQL-SPFSFRDVADSWTWNLSDKGVFST 61
           + +LWNPS   WN+H+ R LRD+E   W  +   L +P   R  +    W L+   +F T
Sbjct: 788 VKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKP-LWKLNSNNIFDT 847

Query: 62  GSLTINLASLS-SPIN--NDFYSNLWKGPMPKKVKFFIWELSHSCINTTDTIQRRFPGSS 121
            S+  +L+  S SP N     Y  LWK   PKK KFFIW L H CINT D +Q+R P  +
Sbjct: 848 ASIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWT 907

Query: 122 LSPSRCSMCGKDGETQIHLFSIC 141
           LSP+ C MC K  E   HLF  C
Sbjct: 908 LSPNWCYMCNKSQEDINHLFIHC 929

[Close]

BLAST of Lag0016923 vs. NCBI nr
Match: KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 112.1 bits (279), Expect = 8.8e-21
Identity = 74/225 (32.89%), Postives = 107/225 (47.56%), Query Frame = 0


Query: 2    IAELWNPSEGAWNLHLRRHLRDYEILEWALLSHQL-SPFSFRDVADSWTWNLSDKGVFST 61
            + E WNPS   W+LH+ R LRD+E   W  +   L +P   R       WNL+   +F T
Sbjct: 896  VKEFWNPSSNDWHLHINRPLRDHEENLWHNIKASLPTPLPNRGHPKP-LWNLNSNNIFDT 955

Query: 62   GSLTINLASLS-SPIN--NDFYSNLWKGPMPKKVKFFIWELSHSCINTTDTIQRRFPGSS 121
             S+   +A    SP N   + Y  LWK   PKK KFFIW L H CINT D +Q+R P  +
Sbjct: 956  ASVKRAIAEAPISPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWT 1015

Query: 122  LSPSRCSMCGKDGETQIHLFSICALQGAAVISAELGEYARAASFLEDLIKEKSDDSDIFR 181
            LSP+ C MC K  E   HLF  C        S +L   A+A      L+   S  +D+  
Sbjct: 1016 LSPNWCYMCNKSQEDINHLFIHCP------YSQQLWSKAKA------LLNWNSTPTDVQS 1075

Query: 182  LLGEV-KYKLKDYSGSIAAYKSSTMALETLTIKNSSLWNPSNWLP 222
            L+  +    +++  G I    ++T+  +    +N+ ++      P
Sbjct: 1076 LIQNICSLNIRNQKGLITFNTNATILWKIWLERNNRIFKQQEKAP 1107

[Close]

BLAST of Lag0016923 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 2.1e-04
Identity = 27/100 (27.00%), Postives = 47/100 (47.00%), Query Frame = 0


Query: 46  DSWTWNLSDKGVFSTGSL--TINLASLSSPINNDFYSNLWKGPMPKKVKFFIWELSHSCI 105
           D  +W  S  G FS  S    + +  +  P    F++ LWK  +P++VK F+W + +  +
Sbjct: 253 DRLSWKFSQDGQFSVRSAYEMLTVDEVPRPNMASFFNCLWKVRVPERVKTFLWLVGNQAV 312

Query: 106 NTTDTIQRRFPGSSLSPSRCSMCGKDGETQIHLFSICALQ 144
            T +   RR   +S   + C +C    E+ +H+   C  Q
Sbjct: 313 MTEEERHRRHLSAS---NVCQVCKGGVESMLHVLRDCPAQ 349

[Close]

BLAST of Lag0016923 vs. ExPASy TrEMBL
Match: A0A5A7T5L3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G00210 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.0e-22
Identity = 59/144 (40.97%), Postives = 75/144 (52.08%), Query Frame = 0


Query: 2   IAELWNPSEGAWNLHLRRHLRDYEILEWALLSHQLSPFSFRDVADSWTWNLSDKGVFSTG 61
           I ELW+P+   WNLH RR L D EI  W  L   L   +     ++  W  +DKG ++  
Sbjct: 609 IEELWDPNTNDWNLHPRRPLNDREIELWTNLKGILKILTLNGGKNNMIWTPNDKGTYTAA 668

Query: 62  SLTINLASLSSPIN---NDFYSNLWKGPMPKKVKFFIWELSHSCINTTDTIQRRFPGSSL 121
           S    L S     N    +FY  LWK  +PKK KFF+W L H  INTTD +Q+R P + L
Sbjct: 669 SAKRQLLSERPTPNLNERNFYETLWKSKLPKKGKFFMWSLFHESINTTDVLQKRLPNTYL 728

Query: 122 SPSRCSMCGKDGETQIHLFSICAL 143
            PSRC +   D E   H+F  C L
Sbjct: 729 QPSRCFLYKSDAEGINHIFISCHL 752

[Close]

BLAST of Lag0016923 vs. ExPASy TrEMBL
Match: A0A5D3BPP1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1582G00200 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.0e-22
Identity = 59/144 (40.97%), Postives = 75/144 (52.08%), Query Frame = 0


Query: 2   IAELWNPSEGAWNLHLRRHLRDYEILEWALLSHQLSPFSFRDVADSWTWNLSDKGVFSTG 61
           I ELW+P+   WNLH RR L D EI  W  L   L   +     ++  W  +DKG ++  
Sbjct: 584 IEELWDPNTNDWNLHPRRPLNDREIELWTNLKGILKILTLNGGKNNMIWTPNDKGTYTAA 643

Query: 62  SLTINLASLSSPIN---NDFYSNLWKGPMPKKVKFFIWELSHSCINTTDTIQRRFPGSSL 121
           S    L S     N    +FY  LWK  +PKK KFF+W L H  INTTD +Q+R P + L
Sbjct: 644 SAKRQLLSERPTPNLNERNFYETLWKSKLPKKGKFFMWSLFHESINTTDVLQKRLPNTYL 703

Query: 122 SPSRCSMCGKDGETQIHLFSICAL 143
            PSRC +   D E   H+F  C L
Sbjct: 704 QPSRCFLYKSDAEGINHIFISCHL 727

[Close]

BLAST of Lag0016923 vs. ExPASy TrEMBL
Match: A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 5.0e-22
Identity = 61/143 (42.66%), Postives = 78/143 (54.55%), Query Frame = 0


Query: 2   IAELWNPSEGAWNLHLRRHLRDYEILEWALLSHQL-SPFSFRDVADSWTWNLSDKGVFST 61
           + +LWNPS   WN+H+ R LRD+E   W  +   L +P   R  +    W L+   +F T
Sbjct: 788 VKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKP-LWKLNSNNIFDT 847

Query: 62  GSLTINLASLS-SPIN--NDFYSNLWKGPMPKKVKFFIWELSHSCINTTDTIQRRFPGSS 121
            S+  +L+  S SP N     Y  LWK   PKK KFFIW L H CINT D +Q+R P  +
Sbjct: 848 ASIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWT 907

Query: 122 LSPSRCSMCGKDGETQIHLFSIC 141
           LSP+ C MC K  E   HLF  C
Sbjct: 908 LSPNWCYMCNKSQEDINHLFIHC 929

[Close]

BLAST of Lag0016923 vs. ExPASy TrEMBL
Match: A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 5.0e-22
Identity = 61/143 (42.66%), Postives = 78/143 (54.55%), Query Frame = 0


Query: 2   IAELWNPSEGAWNLHLRRHLRDYEILEWALLSHQL-SPFSFRDVADSWTWNLSDKGVFST 61
           + +LWNPS   WN+H+ R LRD+E   W  +   L +P   R  +    W L+   +F T
Sbjct: 694 VKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKP-LWKLNSNNIFDT 753

Query: 62  GSLTINLASLS-SPIN--NDFYSNLWKGPMPKKVKFFIWELSHSCINTTDTIQRRFPGSS 121
            S+  +L+  S SP N     Y  LWK   PKK KFFIW L H CINT D +Q+R P  +
Sbjct: 754 ASIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWT 813

Query: 122 LSPSRCSMCGKDGETQIHLFSIC 141
           LSP+ C MC K  E   HLF  C
Sbjct: 814 LSPNWCYMCNKSQEDINHLFIHC 835

[Close]

BLAST of Lag0016923 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.3e-21
Identity = 74/225 (32.89%), Postives = 107/225 (47.56%), Query Frame = 0


Query: 2    IAELWNPSEGAWNLHLRRHLRDYEILEWALLSHQL-SPFSFRDVADSWTWNLSDKGVFST 61
            + E WNPS   W+LH+ R LRD+E   W  +   L +P   R       WNL+   +F T
Sbjct: 896  VKEFWNPSSNDWHLHINRPLRDHEENLWHNIKASLPTPLPNRGHPKP-LWNLNSNNIFDT 955

Query: 62   GSLTINLASLS-SPIN--NDFYSNLWKGPMPKKVKFFIWELSHSCINTTDTIQRRFPGSS 121
             S+   +A    SP N   + Y  LWK   PKK KFFIW L H CINT D +Q+R P  +
Sbjct: 956  ASVKRAIAEAPISPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWT 1015

Query: 122  LSPSRCSMCGKDGETQIHLFSICALQGAAVISAELGEYARAASFLEDLIKEKSDDSDIFR 181
            LSP+ C MC K  E   HLF  C        S +L   A+A      L+   S  +D+  
Sbjct: 1016 LSPNWCYMCNKSQEDINHLFIHCP------YSQQLWSKAKA------LLNWNSTPTDVQS 1075

Query: 182  LLGEV-KYKLKDYSGSIAAYKSSTMALETLTIKNSSLWNPSNWLP 222
            L+  +    +++  G I    ++T+  +    +N+ ++      P
Sbjct: 1076 LIQNICSLNIRNQKGLITFNTNATILWKIWLERNNRIFKQQEKAP 1107

[Close]

BLAST of Lag0016923 vs. TAIR 10
Match: AT1G78915.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 77.4 bits (189), Expect = 2.2e-14
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 141 ALQGAAVISAELGEYARAASFLEDLIKEKSDDSDIFRLLGEVKYKLKDYSGSIAAYKSS 200
           AL+GAAV   ELG+Y+RAA+FLE L KE+  D D+FRLLGEV Y+L +Y GSIAAYK S
Sbjct: 190 ALEGAAVTLTELGDYSRAAAFLEKLAKERPTDPDVFRLLGEVNYELNNYEGSIAAYKIS 248

[Close]

BLAST of Lag0016923 vs. TAIR 10
Match: AT1G78915.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 77.4 bits (189), Expect = 2.2e-14
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 141 ALQGAAVISAELGEYARAASFLEDLIKEKSDDSDIFRLLGEVKYKLKDYSGSIAAYKSS 200
           AL+GAAV   ELG+Y+RAA+FLE L KE+  D D+FRLLGEV Y+L +Y GSIAAYK S
Sbjct: 207 ALEGAAVTLTELGDYSRAAAFLEKLAKERPTDPDVFRLLGEVNYELNNYEGSIAAYKIS 265

[Close]

BLAST of Lag0016923 vs. TAIR 10
Match: AT1G78915.3 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 77.4 bits (189), Expect = 2.2e-14
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 141 ALQGAAVISAELGEYARAASFLEDLIKEKSDDSDIFRLLGEVKYKLKDYSGSIAAYKSS 200
           AL+GAAV   ELG+Y+RAA+FLE L KE+  D D+FRLLGEV Y+L +Y GSIAAYK S
Sbjct: 210 ALEGAAVTLTELGDYSRAAAFLEKLAKERPTDPDVFRLLGEVNYELNNYEGSIAAYKIS 268

The following BLAST results are available for this feature:

BLAST of Lag0016923 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037436.1	6.1e-22	40.97	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK00226.1	6.1e-22	40.97	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0044556.1	1.0e-21	42.66	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0041397.1	1.0e-21	42.66	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0039950.1	8.8e-21	32.89	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245...	[more]

BLAST of Lag0016923 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C2F6	2.1e-04	27.00	Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]

BLAST of Lag0016923 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T5L3	3.0e-22	40.97	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3BPP1	3.0e-22	40.97	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TIB8	5.0e-22	42.66	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TR15	5.0e-22	42.66	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7T9I7	4.3e-21	32.89	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of Lag0016923 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78915.1	2.2e-14	66.10	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G78915.2	2.2e-14	66.10	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G78915.3	2.2e-14	66.10	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 134..215 e-value: 6.6E-6 score: 27.8
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 143..274
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 75..142 e-value: 6.7E-11 score: 42.7
None	No IPR available	PANTHER	PTHR26312:SF126	TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN	coord: 140..237
None	No IPR available	PANTHER	PTHR26312	TETRATRICOPEPTIDE REPEAT PROTEIN 5	coord: 140..237

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0016923.1	Lag0016923.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding