Lag0016197 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0016197
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRibosomal RNA adenine dimethylase family protein
Locationchr12: 34634292 .. 34634840 (-)
RNA-Seq ExpressionLag0016197
SyntenyLag0016197
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCCATGGCAGAAGGAGCACCACCTTCATTGCCCGACCTCGTACTCTCGCTAGAGCAAGCATCATTCATGGCCAAGCAGCTTCCTTCTACCTCTAACCCAACCCATCTCCTTCAAATCTACAATTCTCTCCACCAAGCCAGCCTCAACCTCTCCCTTTTCCTCTCTAGAACTCACTTCCCCCAATCCCTTCCTCTTTCTCTTCCTCTTCCTCTTCCTCGCCCTTCCATCAACGAAAATTCCCTCTCCTCTGCAACCAGCGCCGCCTTCAACGACGACGCCGACCAGCCGATGCAGGTCGGCGACGACGAAGATGCCGACGCCGAGCACAATTCCAAGGGCACGATTGAAATGGTGGAGGAGAAGATGAAGGATTGCTTTATTAAGAACAAGCGGGTCAAGCGTCAACTATCGCCGTCCGCGGCGGCTTTGGCGGAGGAAAGACGAGTGCACCGTGATGATCGGTTTGGTGCGGCGGCGAAGGGTTTCGATCCTCGTGCTGAGAGATTGCGGGCCTTGGACCTTATTTCCCAGTTTCATGCGTGA

mRNA sequence

ATGGAAGCCATGGCAGAAGGAGCACCACCTTCATTGCCCGACCTCGTACTCTCGCTAGAGCAAGCATCATTCATGGCCAAGCAGCTTCCTTCTACCTCTAACCCAACCCATCTCCTTCAAATCTACAATTCTCTCCACCAAGCCAGCCTCAACCTCTCCCTTTTCCTCTCTAGAACTCACTTCCCCCAATCCCTTCCTCTTTCTCTTCCTCTTCCTCTTCCTCGCCCTTCCATCAACGAAAATTCCCTCTCCTCTGCAACCAGCGCCGCCTTCAACGACGACGCCGACCAGCCGATGCAGGTCGGCGACGACGAAGATGCCGACGCCGAGCACAATTCCAAGGGCACGATTGAAATGGTGGAGGAGAAGATGAAGGATTGCTTTATTAAGAACAAGCGGGTCAAGCGTCAACTATCGCCGTCCGCGGCGGCTTTGGCGGAGGAAAGACGAGTGCACCGTGATGATCGGTTTGGTGCGGCGGCGAAGGGTTTCGATCCTCGTGCTGAGAGATTGCGGGCCTTGGACCTTATTTCCCAGTTTCATGCGTGA

Coding sequence (CDS)

ATGGAAGCCATGGCAGAAGGAGCACCACCTTCATTGCCCGACCTCGTACTCTCGCTAGAGCAAGCATCATTCATGGCCAAGCAGCTTCCTTCTACCTCTAACCCAACCCATCTCCTTCAAATCTACAATTCTCTCCACCAAGCCAGCCTCAACCTCTCCCTTTTCCTCTCTAGAACTCACTTCCCCCAATCCCTTCCTCTTTCTCTTCCTCTTCCTCTTCCTCGCCCTTCCATCAACGAAAATTCCCTCTCCTCTGCAACCAGCGCCGCCTTCAACGACGACGCCGACCAGCCGATGCAGGTCGGCGACGACGAAGATGCCGACGCCGAGCACAATTCCAAGGGCACGATTGAAATGGTGGAGGAGAAGATGAAGGATTGCTTTATTAAGAACAAGCGGGTCAAGCGTCAACTATCGCCGTCCGCGGCGGCTTTGGCGGAGGAAAGACGAGTGCACCGTGATGATCGGTTTGGTGCGGCGGCGAAGGGTTTCGATCCTCGTGCTGAGAGATTGCGGGCCTTGGACCTTATTTCCCAGTTTCATGCGTGA

Protein sequence

MEAMAEGAPPSLPDLVLSLEQASFMAKQLPSTSNPTHLLQIYNSLHQASLNLSLFLSRTHFPQSLPLSLPLPLPRPSINENSLSSATSAAFNDDADQPMQVGDDEDADAEHNSKGTIEMVEEKMKDCFIKNKRVKRQLSPSAAALAEERRVHRDDRFGAAAKGFDPRAERLRALDLISQFHA
Homology
BLAST of Lag0016197 vs. NCBI nr
Match: XP_038876419.1 (uncharacterized protein LOC120068853 [Benincasa hispida] >XP_038876420.1 uncharacterized protein LOC120068853 [Benincasa hispida] >XP_038876421.1 uncharacterized protein LOC120068853 [Benincasa hispida] >XP_038876422.1 uncharacterized protein LOC120068853 [Benincasa hispida])

HSP 1 Score: 291.2 bits (744), Expect = 6.2e-75
Identity = 156/182 (85.71%), Postives = 166/182 (91.21%), Query Frame = 0

Query: 1   MEAMAEGAPPSLPDLVLSLEQASFMAKQLPSTSNPTHLLQIYNSLHQASLNLSLFLSRTH 60
           MEAMAEGA PSL DL+LSLEQASFMAKQLPS+SNPTHLLQIYNSLHQA+LNLSLFLS+T 
Sbjct: 1   MEAMAEGATPSLSDLLLSLEQASFMAKQLPSSSNPTHLLQIYNSLHQANLNLSLFLSKTQ 60

Query: 61  FPQSLPLSLPLPLPRPSINENSLSSATSAAFNDDADQPMQVGDDEDADAEHNSKGTIEMV 120
           F QS      LPLPRPSINENSLSSATSAAFNDD ++PMQVGDD+DADAEH+SKGTIEMV
Sbjct: 61  FSQS------LPLPRPSINENSLSSATSAAFNDDGNEPMQVGDDDDADAEHDSKGTIEMV 120

Query: 121 EEKMKDCFIKNKRVKRQLSPSAAALAEERRVHRDDRFGAAAKGFDPRAERLRALDLISQF 180
           EEKMKDCFIKNKRVKRQLSPSAAA+AEERRVHRD+RF A  KGFDP  ERLRALDLISQF
Sbjct: 121 EEKMKDCFIKNKRVKRQLSPSAAAMAEERRVHRDNRFTATPKGFDPHVERLRALDLISQF 176

Query: 181 HA 183
           HA
Sbjct: 181 HA 176

BLAST of Lag0016197 vs. NCBI nr
Match: XP_022156139.1 (uncharacterized protein LOC111023095 [Momordica charantia] >XP_022156140.1 uncharacterized protein LOC111023095 [Momordica charantia])

HSP 1 Score: 282.0 bits (720), Expect = 3.8e-72
Identity = 152/182 (83.52%), Postives = 162/182 (89.01%), Query Frame = 0

Query: 1   MEAMAEGAPPSLPDLVLSLEQASFMAKQLPSTSNPTHLLQIYNSLHQASLNLSLFLSRTH 60
           MEAMAEGA PSLPDLVLSLEQASFMAKQLPSTSNP+HLLQIYNSLHQA+ NLS+FLS T 
Sbjct: 1   MEAMAEGASPSLPDLVLSLEQASFMAKQLPSTSNPSHLLQIYNSLHQANHNLSIFLSGTQ 60

Query: 61  FPQSLPLSLPLPLPRPSINENSLSSATSAAFNDDADQPMQVGDDEDADAEHNSKGTIEMV 120
           FPQS      LPLPRPS+NENSLSSATSAAFNDD ++PMQVGDD     E NSKG+IEMV
Sbjct: 61  FPQS------LPLPRPSLNENSLSSATSAAFNDDGNEPMQVGDD-----EQNSKGSIEMV 120

Query: 121 EEKMKDCFIKNKRVKRQLSPSAAALAEERRVHRDDRFGAAAKGFDPRAERLRALDLISQF 180
           EEKMKDCFIKNKRVKRQLSPS AA+AEERR+HRDDRFGA +KGFDPR ERLRALDLISQF
Sbjct: 121 EEKMKDCFIKNKRVKRQLSPSTAAMAEERRLHRDDRFGATSKGFDPRVERLRALDLISQF 171

Query: 181 HA 183
           HA
Sbjct: 181 HA 171

BLAST of Lag0016197 vs. NCBI nr
Match: KAG6574778.1 (hypothetical protein SDJN03_25417, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013358.1 hypothetical protein SDJN02_23522, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 278.9 bits (712), Expect = 3.2e-71
Identity = 152/183 (83.06%), Postives = 161/183 (87.98%), Query Frame = 0

Query: 1   MEAMAEG-APPSLPDLVLSLEQASFMAKQLPSTSNPTHLLQIYNSLHQASLNLSLFLSRT 60
           ME MAEG A PSLPDLVLSLEQASFMAKQL STSNP HLLQIYNSLHQA+LNLS+FLS  
Sbjct: 1   MEGMAEGAAAPSLPDLVLSLEQASFMAKQLSSTSNPAHLLQIYNSLHQANLNLSVFLSTP 60

Query: 61  HFPQSLPLSLPLPLPRPSINENSLSSATSAAFNDDADQPMQVGDDEDADAEHNSKGTIEM 120
           H+PQS      LPLP PSIN+N LSSATSAAFND  ++PMQVGDDEDADAE NSKGTIEM
Sbjct: 61  HYPQS------LPLPPPSINDNLLSSATSAAFNDSGNEPMQVGDDEDADAEQNSKGTIEM 120

Query: 121 VEEKMKDCFIKNKRVKRQLSPSAAALAEERRVHRDDRFGAAAKGFDPRAERLRALDLISQ 180
           VEEKMKDCFIKNKRVKR+LSPSAAA+AEERRVHRD+RF A AKGFDP  ERLRALDLISQ
Sbjct: 121 VEEKMKDCFIKNKRVKRKLSPSAAAMAEERRVHRDNRFSATAKGFDPHVERLRALDLISQ 177

Query: 181 FHA 183
           FHA
Sbjct: 181 FHA 177

BLAST of Lag0016197 vs. NCBI nr
Match: XP_011656677.1 (uncharacterized protein LOC105435764 [Cucumis sativus] >XP_031743326.1 uncharacterized protein LOC105435764 [Cucumis sativus] >XP_031743327.1 uncharacterized protein LOC105435764 [Cucumis sativus] >XP_031743328.1 uncharacterized protein LOC105435764 [Cucumis sativus] >KGN46204.1 hypothetical protein Csa_005182 [Cucumis sativus])

HSP 1 Score: 273.9 bits (699), Expect = 1.0e-69
Identity = 152/183 (83.06%), Postives = 161/183 (87.98%), Query Frame = 0

Query: 1   MEAMAEG-APPSLPDLVLSLEQASFMAKQLPSTSNPTHLLQIYNSLHQASLNLSLFLSRT 60
           MEAMA+G APPSL DL+LSL+QA+FMAKQLPSTSNPTHLLQIYNSLHQA+LNLSLFLS T
Sbjct: 1   MEAMADGTAPPSLSDLLLSLDQATFMAKQLPSTSNPTHLLQIYNSLHQANLNLSLFLSTT 60

Query: 61  HFPQSLPLSLPLPLPRPSINENSLSSATSAAFNDDADQPMQVGDDEDADAEHNSKGTIEM 120
           H PQSLP  LPLPLP PSINE SLSSATSAAF+     PMQVGDD+DADA  NSKGTIEM
Sbjct: 61  HLPQSLP--LPLPLPPPSINETSLSSATSAAFD-----PMQVGDDDDADAHQNSKGTIEM 120

Query: 121 VEEKMKDCFIKNKRVKRQLSPSAAALAEERRVHRDDRFGAAAKGFDPRAERLRALDLISQ 180
           VEEKMKDCFIKNKRVKRQLSPSAAA+AEERRVH  +RF A  KGFDP  ERLRALDLISQ
Sbjct: 121 VEEKMKDCFIKNKRVKRQLSPSAAAMAEERRVHPHNRFTATPKGFDPHVERLRALDLISQ 176

Query: 181 FHA 183
           FHA
Sbjct: 181 FHA 176

BLAST of Lag0016197 vs. NCBI nr
Match: XP_023548054.1 (uncharacterized protein LOC111806806 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 272.3 bits (695), Expect = 3.0e-69
Identity = 151/187 (80.75%), Postives = 161/187 (86.10%), Query Frame = 0

Query: 1   MEAMAEG-APPSLPDLVLSLEQASFMAKQLPSTSNPTHLLQIYNSLHQASLNLSLFLSRT 60
           ME MAEG A PSLPDLVLSLEQASFMAKQL STSNP HLLQIYNSLHQA+LNLS+FLS  
Sbjct: 1   MEGMAEGAAAPSLPDLVLSLEQASFMAKQLSSTSNPAHLLQIYNSLHQANLNLSVFLSTP 60

Query: 61  HFPQSLPLSLPLPLPRPSINENSLSSATSAAFNDDADQPMQVGDDE----DADAEHNSKG 120
           H+PQS      LP+P PSIN+N LSSATSAAFND  ++PMQVGDDE    DADAE NSKG
Sbjct: 61  HYPQS------LPIPPPSINDNLLSSATSAAFNDSGNEPMQVGDDEDADADADAEQNSKG 120

Query: 121 TIEMVEEKMKDCFIKNKRVKRQLSPSAAALAEERRVHRDDRFGAAAKGFDPRAERLRALD 180
           TIEMVEEKMKDCFIKNKRVKR+LSPSAAA+AEERRVHRD+RF A AKGFDP  ERLRALD
Sbjct: 121 TIEMVEEKMKDCFIKNKRVKRKLSPSAAAMAEERRVHRDNRFSATAKGFDPHVERLRALD 180

Query: 181 LISQFHA 183
           LISQFHA
Sbjct: 181 LISQFHA 181

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038876419.16.2e-7585.71uncharacterized protein LOC120068853 [Benincasa hispida] >XP_038876420.1 unchara... [more]
XP_022156139.13.8e-7283.52uncharacterized protein LOC111023095 [Momordica charantia] >XP_022156140.1 uncha... [more]
KAG6574778.13.2e-7183.06hypothetical protein SDJN03_25417, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_011656677.11.0e-6983.06uncharacterized protein LOC105435764 [Cucumis sativus] >XP_031743326.1 uncharact... [more]
XP_023548054.13.0e-6980.75uncharacterized protein LOC111806806 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..112
NoneNo IPR availablePANTHERPTHR37697AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SNZcoord: 4..182

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0016197.1Lag0016197.1mRNA