Lag0015622 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015622
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionIntegrase catalytic domain-containing protein
Locationchr12: 17877621 .. 17878148 (+)
RNA-Seq ExpressionLag0015622
SyntenyLag0015622
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAACCACCCACGATAACACGATCTCAGTAGATAGAGTGATGCTACTCTATTGCATTATGAAGGGGTTGGAGATCAACGTAGGGAACATTATCAGGGATGAGATTTTAGCCTGTGGGAGAAAATGGGCAGGCAAGCTTTTCTTTCGATCGCTTATCACCCAACTCTGCCAAAGGGTGAAGATCGTTCCGGGCAAGGACGAGGAGCGTCACTTCTTCAAGCCGACCATTGACCTGTCCTTGATTGGGAAGCTCCAGCAGAACAACATCCAGAGGAAAGACAAAGCCTCCACATCTCTGGTCACTCCGACATCAGGGTCGAGCATGGCTTCTCCATCCCAGCACAGTTCTTTTACAGGGCCTTCACCGTCATCGGAAGCCCTAGCCATTGCCTACCACCAGCTAGATCAAATTAGGGAGAATCTGAGAACATATTGGGCATATGCAAAGGAGCGGGATGAAGCCATTAGAGAGTTCTACCTCTCTATCGCTCCAAGTATTGCTTCGATCTTTCCCAATTCCCCTTAG

mRNA sequence

ATGCCAACCACCCACGATAACACGATCTCAGTAGATAGAGTGATGCTACTCTATTGCATTATGAAGGGGTTGGAGATCAACGTAGGGAACATTATCAGGGATGAGATTTTAGCCTGTGGGAGAAAATGGGCAGGCAAGCTTTTCTTTCGATCGCTTATCACCCAACTCTGCCAAAGGGTGAAGATCGTTCCGGGCAAGGACGAGGAGCGTCACTTCTTCAAGCCGACCATTGACCTGTCCTTGATTGGGAAGCTCCAGCAGAACAACATCCAGAGGAAAGACAAAGCCTCCACATCTCTGGTCACTCCGACATCAGGGTCGAGCATGGCTTCTCCATCCCAGCACAGTTCTTTTACAGGGCCTTCACCGTCATCGGAAGCCCTAGCCATTGCCTACCACCAGCTAGATCAAATTAGGGAGAATCTGAGAACATATTGGGCATATGCAAAGGAGCGGGATGAAGCCATTAGAGAGTTCTACCTCTCTATCGCTCCAAGTATTGCTTCGATCTTTCCCAATTCCCCTTAG

Coding sequence (CDS)

ATGCCAACCACCCACGATAACACGATCTCAGTAGATAGAGTGATGCTACTCTATTGCATTATGAAGGGGTTGGAGATCAACGTAGGGAACATTATCAGGGATGAGATTTTAGCCTGTGGGAGAAAATGGGCAGGCAAGCTTTTCTTTCGATCGCTTATCACCCAACTCTGCCAAAGGGTGAAGATCGTTCCGGGCAAGGACGAGGAGCGTCACTTCTTCAAGCCGACCATTGACCTGTCCTTGATTGGGAAGCTCCAGCAGAACAACATCCAGAGGAAAGACAAAGCCTCCACATCTCTGGTCACTCCGACATCAGGGTCGAGCATGGCTTCTCCATCCCAGCACAGTTCTTTTACAGGGCCTTCACCGTCATCGGAAGCCCTAGCCATTGCCTACCACCAGCTAGATCAAATTAGGGAGAATCTGAGAACATATTGGGCATATGCAAAGGAGCGGGATGAAGCCATTAGAGAGTTCTACCTCTCTATCGCTCCAAGTATTGCTTCGATCTTTCCCAATTCCCCTTAG

Protein sequence

MPTTHDNTISVDRVMLLYCIMKGLEINVGNIIRDEILACGRKWAGKLFFRSLITQLCQRVKIVPGKDEERHFFKPTIDLSLIGKLQQNNIQRKDKASTSLVTPTSGSSMASPSQHSSFTGPSPSSEALAIAYHQLDQIRENLRTYWAYAKERDEAIREFYLSIAPSIASIFPNSP
Homology
BLAST of Lag0015622 vs. NCBI nr
Match: PON59596.1 (hypothetical protein PanWU01x14_158080 [Parasponia andersonii])

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-13
Identity = 58/179 (32.40%), Postives = 86/179 (48.04%), Query Frame = 0

Query: 1   MPTTHDNTISVDRVMLLYCIMKGLEINVGNIIRDEILACGRKWAGKLFFRSLITQLCQRV 60
           +PTTH  T+S DR++LLY ++ G  INVG +I  EI AC  + +G LFF SLITQLC+  
Sbjct: 57  LPTTHGKTVSKDRMLLLYSMLTGKSINVGRMIHSEIRACAARKSGALFFPSLITQLCRNA 116

Query: 61  KIVPGKDEERHFFKPTIDLSLIGKL-QQNNIQRKDKASTSLVTPTSGSSMASPSQHSSFT 120
           +     +EE+      ID   + ++ Q+   +   + STS  T  S S            
Sbjct: 117 RAPFLVNEEKLHITGEIDAIAVARITQEGQTELTQQPSTSRPTVASSSRANGDILQQLKA 176

Query: 121 GPSPSSEALAIAYHQ---LDQIRENLRTYWAYAKERDEAIREFYLSIAPSIASIFPNSP 176
                S+     YH    L    +  + +WAY+KERD A+++   +        FP  P
Sbjct: 177 LEQRLSQQEVQQYHMMSLLQHTHKQQQQFWAYSKERDTALKKALQNNFTRPIPTFPTFP 235

BLAST of Lag0015622 vs. NCBI nr
Match: KAF4375842.1 (hypothetical protein G4B88_026421 [Cannabis sativa])

HSP 1 Score: 82.0 bits (201), Expect = 5.5e-12
Identity = 51/153 (33.33%), Postives = 75/153 (49.02%), Query Frame = 0

Query: 1    MPTTHDNTISVDRVMLLYCIMKGLEINVGNIIRDEILACGRKWAGKLFFRSLITQLCQRV 60
            +PT+HD+T+S +R+ +LYCI+KG +INVG +I  EI  C  +  GKLFF  LIT+ C+  
Sbjct: 886  LPTSHDSTVSRERMWMLYCIVKGKKINVGKVIAKEIFECAHRVKGKLFFSCLITEKCRCA 945

Query: 61   KIVPGKDEERHFFKPTIDLSLIGKLQQNNIQRKDKASTSLVTPTSGSSMASPSQHSSFTG 120
             +    DE+                    + RK   S     P       +PS  ++ T 
Sbjct: 946  NVPMLNDED-------------------PVPRKGVVS---FEPDRAPKRTTPSTTTASTS 1005

Query: 121  PSPSSEALAIAYHQLDQIRENLRTYWAYAKERD 154
              P  E L+       Q+ E L+T+W Y +ERD
Sbjct: 1006 RDPMDERLSKHEALQQQMCERLQTHWNYERERD 1016

BLAST of Lag0015622 vs. NCBI nr
Match: MCI09484.1 (hypothetical protein [Trifolium medium])

HSP 1 Score: 79.7 bits (195), Expect = 2.7e-11
Identity = 55/153 (35.95%), Postives = 84/153 (54.90%), Query Frame = 0

Query: 1   MPTTHDNTISVDRVMLLYCIMKGLEINVGNIIRDEILACGRKWA--GKLFFRSLITQLCQ 60
           MPTTH+ T++  R++LL+CI+ G +INVG II  EI+ C  K +  G L+F  LIT+LC+
Sbjct: 40  MPTTHNETVNKARLVLLHCIIAGQKINVGRIIHQEIVNCSAKKSNEGMLYFPCLITELCK 99

Query: 61  RVKI-VPGKDEERHFFKPT--IDLSLIGKLQQNNIQRKDKASTSLVTPTSGSSMASPSQH 120
           +  + V G+DE    F+PT   D   I  L + N  RK +       P + +S A+ SQ 
Sbjct: 100 KNLVHVSGRDE---VFQPTNSFDQKAIETLLKGNTGRKPRQQ----LPEATTSAAAVSQ- 159

Query: 121 SSFTGPSPSSEALAIAYHQLDQIRENLRTYWAY 149
                        A+   +  + R+N++TYWA+
Sbjct: 160 -------------AVDAEEFMKFRKNMKTYWAW 171

BLAST of Lag0015622 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-10
Identity = 50/162 (30.86%), Postives = 80/162 (49.38%), Query Frame = 0

Query: 1   MPTTHDNTISVDRVMLLYCIMKGLEINVGNIIRDEILACGRKWAGKLFFRSLITQLCQRV 60
           +PTTH  T+S DR++LL+ ++ G  INVG +I  EI AC  +  G LFF SLIT+LC+  
Sbjct: 186 LPTTHGKTVSKDRMLLLHSMLIGKSINVGRMIHSEIRACAARKTGALFFPSLITRLCRNA 245

Query: 61  KIVPGKDEERHFFKPTIDLSLIGKLQQNNIQRKDKASTSLVTPTSGSSMASPSQHSSFTG 120
           +     +EE+      ID   + ++ Q       +  +S    T+ S+  +         
Sbjct: 246 RAPFLVNEEKLHNTGEIDAIAVARIAQEGPTESTQQPSSSRPATASSNRTNGDILQQLKA 305

Query: 121 -PSPSSEALAIAYHQ---LDQIRENLRTYWAYAKERDEAIRE 159
                S+     YH    L    +  + +WAY+KERD A+++
Sbjct: 306 LEQRLSQQEVQQYHMMSLLQHTHKQQQQFWAYSKERDTALKK 347

BLAST of Lag0015622 vs. NCBI nr
Match: PON78020.1 (hypothetical protein PanWU01x14_023740 [Parasponia andersonii])

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-10
Identity = 50/158 (31.65%), Postives = 79/158 (50.00%), Query Frame = 0

Query: 1   MPTTHDNTISVDRVMLLYCIMKGLEINVGNIIRDEILACGRKWAGKLFFRSLITQLCQRV 60
           +PTTH   +S DR++LL+ ++ G  INVG +I  EI AC  +  G LFF SLIT+LC+  
Sbjct: 116 LPTTHGKIVSKDRMLLLHSMLNGKSINVGRMIHSEIRACAAQKTGALFFPSLITRLCRNA 175

Query: 61  KIVPGKDEERHFFKPTIDLSLIGKLQQNNIQRKDKASTSLVTPTSGSSMASPSQHSSFTG 120
             +   +EE+      ID   + ++ Q       +  T      S S  A+ S   +   
Sbjct: 176 PFL--VNEEKLHNTGEIDAIAVARITQ-------EGPTESTQQPSSSRPAAASSSRTNGD 235

Query: 121 PSPSSEALAIAYHQLDQIRENLRTYWAYAKERDEAIRE 159
                +AL     Q +   +  + +WAY+KERD A+++
Sbjct: 236 VLQQLKALEQRLSQQEHTHKQQQQFWAYSKERDTALKK 264

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PON59596.11.7e-1332.40hypothetical protein PanWU01x14_158080 [Parasponia andersonii][more]
KAF4375842.15.5e-1233.33hypothetical protein G4B88_026421 [Cannabis sativa][more]
MCI09484.12.7e-1135.95hypothetical protein [Trifolium medium][more]
PON46472.11.4e-1030.86hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii][more]
PON78020.11.4e-1031.65hypothetical protein PanWU01x14_023740 [Parasponia andersonii][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..122

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015622.1Lag0015622.1mRNA