Lag0015617 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0015617
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	RNA-binding protein 24
Location	chr12: 17755227 .. 17756744 (-)
RNA-Seq Expression	Lag0015617
Synteny	Lag0015617

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCAGCAGCAGCAGCAGCAACAACAACAACAACAACATAGGCAATTTCATAACATCAGCAACAGCAACAGCAGCAGCAGCACCACCACCCTTGGCCTTGGACCTCAATACAATAATGACACCACTTTCACCAAAATCTTTGTTGGAGGCTTGGCTTGGGAGACTCAGAGGCATACCATGAGAAGGTATTTTGAACAATTTGGTGAAATTTTGGAAGCTGTTGTTATTACTGATAAGAACACTGGCAGATCCAAGGGTTATGGCTTTGTAAGTTTCCACATTTAATTTCTCCTTTTTCTTTCGTTCTTTCTCTTCCTCTCCAAATGGATTTGGGGTTTGATATTGATTTTGTTTTCAGGTCACGTTTAAGGATCCTGATGCTGCCATTAGAGCTTGTCAAAACCCTTCCCCTGTCATCGATGGAAGAAGGGCTAATTGCAATCTTGCTTCTCTCGGTGCTCATAAGCCTCCTCCTCCCACCCCTCAACAACATGGTTCTTTTTCCCATTCTTTTACCTTTCATCTCATCTATGGATCATTCAATTTTTCACATGCAAACACATGGGATTTTCTTCTTCAATCTGCATTTGTTTTTTTTTGTTATCGAGGAATATGTCAAATCTAAACAAAATTCACCCAAAAAAGTTGAACCAAATTTGCAGGTGGTGGTGGTGGTGGAAGATTTAGAGGTGCATCTGGGATTGTGACCCCCCTTCTTACCATGTCTCTTCATCATCTTACATTCATCAGCCCACTGGTCAATATTCCTTCCCTCTTTCAGCTTATGGGTAAGGTTGAAACAAATGCATTCACAAACCCAATTTTCACATCTTCCTTTTTTCTCATTCAAACTGTCCTTTCTCTATCTTTTGTCCTAATTTCAGGTATGCTGGATATTCGCAAGACAGAATTTATCCATTGGTGCGAATGTTTGAATGTTTATCTGTCTCTATGTCTATTGTTTCTTTTTGGTTTAGTCTTTTTGATGTTCTTGGCATTGATTTGATCTGAGTGTCGTGTTTTCGTTGCAGAACTATTACGGTGTTTACGGGGGCCAACAATTTTCGCCTTATTACTCTGCAAATGGGATTTCGGGACCGGCTGGAATGTTTCAAAATCTCTATCCGTTCTATGCTCAAAGTAGCCAGGGGTACGGCTTCGGAATCCAGTACCCACACCTAATGCAGTATCCATATCTTTCTCAGCAGCACGGCTCGACCGGTATCCTATCACTTCCTGGCTCGTCCGCGACAGGAACGACCAATGCAGGTGCTAAATGAATACAAATGCTTGTAATATAATCATTTTTTGTGTCAATGATGTTGGGGCATTGTTATCTAAAGAATGTCATCTTGTTTGGAGCATGTTGGTTTTGAAAGTAGATTGGAGATTTATGTGCAAAATGTAACAGGTGCAACAGCGACAACGATTATGGCGGTTGGGTCGGGTCCTTCACAAGCTTCTTCTGCAGTAGCATCTGAACAGAATTCTTCTGAGTTAATCTCAACTGGATGA

mRNA sequence

ATGTCTCAGCAGCAGCAGCAGCAACAACAACAACAACAACATAGGCAATTTCATAACATCAGCAACAGCAACAGCAGCAGCAGCACCACCACCCTTGGCCTTGGACCTCAATACAATAATGACACCACTTTCACCAAAATCTTTGTTGGAGGCTTGGCTTGGGAGACTCAGAGGCATACCATGAGAAGGTATTTTGAACAATTTGGTGAAATTTTGGAAGCTGTTGTTATTACTGATAAGAACACTGGCAGATCCAAGGGTTATGGCTTTGTCACGTTTAAGGATCCTGATGCTGCCATTAGAGCTTGTCAAAACCCTTCCCCTGTCATCGATGGAAGAAGGGCTAATTGCAATCTTGCTTCTCTCGGTGCTCATAAGCCTCCTCCTCCCACCCCTCAACAACATGGTGGTGGTGGTGGTGGAAGATTTAGAGGTGCATCTGGGATTGTGACCCCCCTTCTTACCATGTCTCTTCATCATCTTACATTCATCAGCCCACTGGTCAATATTCCTTCCCTCTTTCAGCTTATGGGTATGCTGGATATTCGCAAGACAGAATTTATCCATTGGTGCGAATGTTTGAATAACTATTACGGTGTTTACGGGGGCCAACAATTTTCGCCTTATTACTCTGCAAATGGGATTTCGGGACCGGCTGGAATGTTTCAAAATCTCTATCCGTTCTATGCTCAAAGTAGCCAGGGGTACGGCTTCGGAATCCAGTACCCACACCTAATGCAGTATCCATATCTTTCTCAGCAGCACGGCTCGACCGGTATCCTATCACTTCCTGGCTCGTCCGCGACAGGAACGACCAATGCAGGTGCAACAGCGACAACGATTATGGCGGTTGGGTCGGGTCCTTCACAAGCTTCTTCTGCAGTAGCATCTGAACAGAATTCTTCTGAGTTAATCTCAACTGGATGA

Coding sequence (CDS)

ATGTCTCAGCAGCAGCAGCAGCAACAACAACAACAACAACATAGGCAATTTCATAACATCAGCAACAGCAACAGCAGCAGCAGCACCACCACCCTTGGCCTTGGACCTCAATACAATAATGACACCACTTTCACCAAAATCTTTGTTGGAGGCTTGGCTTGGGAGACTCAGAGGCATACCATGAGAAGGTATTTTGAACAATTTGGTGAAATTTTGGAAGCTGTTGTTATTACTGATAAGAACACTGGCAGATCCAAGGGTTATGGCTTTGTCACGTTTAAGGATCCTGATGCTGCCATTAGAGCTTGTCAAAACCCTTCCCCTGTCATCGATGGAAGAAGGGCTAATTGCAATCTTGCTTCTCTCGGTGCTCATAAGCCTCCTCCTCCCACCCCTCAACAACATGGTGGTGGTGGTGGTGGAAGATTTAGAGGTGCATCTGGGATTGTGACCCCCCTTCTTACCATGTCTCTTCATCATCTTACATTCATCAGCCCACTGGTCAATATTCCTTCCCTCTTTCAGCTTATGGGTATGCTGGATATTCGCAAGACAGAATTTATCCATTGGTGCGAATGTTTGAATAACTATTACGGTGTTTACGGGGGCCAACAATTTTCGCCTTATTACTCTGCAAATGGGATTTCGGGACCGGCTGGAATGTTTCAAAATCTCTATCCGTTCTATGCTCAAAGTAGCCAGGGGTACGGCTTCGGAATCCAGTACCCACACCTAATGCAGTATCCATATCTTTCTCAGCAGCACGGCTCGACCGGTATCCTATCACTTCCTGGCTCGTCCGCGACAGGAACGACCAATGCAGGTGCAACAGCGACAACGATTATGGCGGTTGGGTCGGGTCCTTCACAAGCTTCTTCTGCAGTAGCATCTGAACAGAATTCTTCTGAGTTAATCTCAACTGGATGA

Protein sequence

MSQQQQQQQQQQQHRQFHNISNSNSSSSTTTLGLGPQYNNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPPPPTPQQHGGGGGGRFRGASGIVTPLLTMSLHHLTFISPLVNIPSLFQLMGMLDIRKTEFIHWCECLNNYYGVYGGQQFSPYYSANGISGPAGMFQNLYPFYAQSSQGYGFGIQYPHLMQYPYLSQQHGSTGILSLPGSSATGTTNAGATATTIMAVGSGPSQASSAVASEQNSSELISTG

Homology

[Close]

BLAST of Lag0015617 vs. NCBI nr
Match: XP_038906691.1 (RNA-binding protein 24-B [Benincasa hispida])

HSP 1 Score: 418.7 bits (1075), Expect = 4.4e-113
Identity = 232/300 (77.33%), Postives = 243/300 (81.00%), Query Frame = 0


Query: 13  QHRQFHNISNSNSSSSTTTLGLGPQYNNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEIL 72
           Q RQFHNIS+SN++SS   L LG QY NDTTFTKIFVGGLAWETQRHTMRRYFEQFGEIL
Sbjct: 3   QQRQFHNISSSNNNSS---LSLGGQY-NDTTFTKIFVGGLAWETQRHTMRRYFEQFGEIL 62

Query: 73  EAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPPPPTP 132
           EAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP PPTP
Sbjct: 63  EAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTP 122

Query: 133 QQHGGGGGGRFRGASGIVTPLLTMSLHHLTFISPLVNIPSLFQL----MGMLDIRKTEFI 192
           Q    G GGRFRGASGIVTP      +H++  S +    S +       G     +    
Sbjct: 123 QH---GVGGRFRGASGIVTP----PAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIY 182

Query: 193 HWCECLNNYYGVYGGQQFSPYYSANGISGPAGMFQNLYPFYAQSSQGYGFGIQYPHLMQY 252
                  NYYGVYGGQQFSPYYSANGISGPAGMFQNLYP+YAQSSQGYGFGIQYPHLMQY
Sbjct: 183 PL-----NYYGVYGGQQFSPYYSANGISGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQY 242

Query: 253 PYLSQQHGSTGILSLPGSSATGTTNAGATATTIMAVGSGPSQASSAVASEQNSSELISTG 309
           PYL QQHGSTGILSLPGS+A GTT  GA ATTIM VGSGPSQASSAVASE NSSELISTG
Sbjct: 243 PYLPQQHGSTGILSLPGSNAIGTTTTGAIATTIMGVGSGPSQASSAVASEPNSSELISTG 286

[Close]

BLAST of Lag0015617 vs. NCBI nr
Match: XP_008460001.1 (PREDICTED: RNA-binding protein 24-B [Cucumis melo])

HSP 1 Score: 414.8 bits (1065), Expect = 6.3e-112
Identity = 229/300 (76.33%), Postives = 243/300 (81.00%), Query Frame = 0


Query: 13  QHRQFHNISNSNSSSSTTTLGLGPQYNNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEIL 72
           Q RQFHNI++SN+SSS   L LG QY NDTTFTKIFVGGLAWETQRHTMRRYFEQFGEIL
Sbjct: 3   QQRQFHNINSSNNSSS---LSLGGQY-NDTTFTKIFVGGLAWETQRHTMRRYFEQFGEIL 62

Query: 73  EAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPPPPTP 132
           EAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP PPTP
Sbjct: 63  EAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTP 122

Query: 133 QQHGGGGGGRFRGASGIVTPLLTMSLHHLTFISPLVNIPSLFQL----MGMLDIRKTEFI 192
           Q    G GGRFRGASGIVTP      +H++  S +    S +       G     +    
Sbjct: 123 QH---GVGGRFRGASGIVTP----PAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIY 182

Query: 193 HWCECLNNYYGVYGGQQFSPYYSANGISGPAGMFQNLYPFYAQSSQGYGFGIQYPHLMQY 252
                  NYYGVYGGQQFSPYYSANG+SGPAGMFQNLYP+YAQSSQGYGFGIQYPHLMQY
Sbjct: 183 PL-----NYYGVYGGQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQY 242

Query: 253 PYLSQQHGSTGILSLPGSSATGTTNAGATATTIMAVGSGPSQASSAVASEQNSSELISTG 309
           PYL QQHGSTGILSLPGS+A GTT +G TAT+  AVGSGPSQASSAVASE NSSELISTG
Sbjct: 243 PYLPQQHGSTGILSLPGSNALGTTTSGTTATSTTAVGSGPSQASSAVASEPNSSELISTG 286

[Close]

BLAST of Lag0015617 vs. NCBI nr
Match: XP_004140591.1 (RNA-binding protein 24 [Cucumis sativus] >KGN46345.1 hypothetical protein Csa_005255 [Cucumis sativus])

HSP 1 Score: 412.9 bits (1060), Expect = 2.4e-111
Identity = 228/300 (76.00%), Postives = 242/300 (80.67%), Query Frame = 0


Query: 13  QHRQFHNISNSNSSSSTTTLGLGPQYNNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEIL 72
           Q RQFHNI++SN+SSS   L LG QY NDTTFTKIFVGGLAWETQRHTMRRYFEQFGEIL
Sbjct: 3   QQRQFHNINSSNNSSS---LSLGGQY-NDTTFTKIFVGGLAWETQRHTMRRYFEQFGEIL 62

Query: 73  EAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPPPPTP 132
           EAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP PPTP
Sbjct: 63  EAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTP 122

Query: 133 QQHGGGGGGRFRGASGIVTPLLTMSLHHLTFISPLVNIPSLFQL----MGMLDIRKTEFI 192
           Q    G GGRFRGASGIVTP      +H++  S +    S +       G     +    
Sbjct: 123 QH---GVGGRFRGASGIVTP----PAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIY 182

Query: 193 HWCECLNNYYGVYGGQQFSPYYSANGISGPAGMFQNLYPFYAQSSQGYGFGIQYPHLMQY 252
                  NYYGVYGGQQFSPYYSANG+SGPAGMFQNLYP+YAQSSQGYGFG+QYPHLMQY
Sbjct: 183 PL-----NYYGVYGGQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQY 242

Query: 253 PYLSQQHGSTGILSLPGSSATGTTNAGATATTIMAVGSGPSQASSAVASEQNSSELISTG 309
           PYL QQH STGILSLPGS+A GTT +G TATTI AVGSGPSQAS AVASE NSSELISTG
Sbjct: 243 PYLPQQHSSTGILSLPGSNALGTTTSGTTATTITAVGSGPSQASPAVASEPNSSELISTG 286

[Close]

BLAST of Lag0015617 vs. NCBI nr
Match: KAA0039913.1 (RNA-binding protein 24-B [Cucumis melo var. makuwa] >TYK24587.1 RNA-binding protein 24-B [Cucumis melo var. makuwa])

HSP 1 Score: 389.8 bits (1000), Expect = 2.2e-104
Identity = 221/300 (73.67%), Postives = 235/300 (78.33%), Query Frame = 0


Query: 13  QHRQFHNISNSNSSSSTTTLGLGPQYNNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEIL 72
           Q RQFHNI++SN+SSS   L LG QY NDTTFTKIFVGGLAWETQRHTMRRYFEQFGEIL
Sbjct: 3   QQRQFHNINSSNNSSS---LSLGGQY-NDTTFTKIFVGGLAWETQRHTMRRYFEQFGEIL 62

Query: 73  EAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPPPPTP 132
           EAVVITDKNTGRS        KDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP PPTP
Sbjct: 63  EAVVITDKNTGRS--------KDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTP 122

Query: 133 QQHGGGGGGRFRGASGIVTPLLTMSLHHLTFISPLVNIPSLFQL----MGMLDIRKTEFI 192
           Q    G GGRFRGASGIVTP      +H++  S +    S +       G     +    
Sbjct: 123 QH---GVGGRFRGASGIVTP----PAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIY 182

Query: 193 HWCECLNNYYGVYGGQQFSPYYSANGISGPAGMFQNLYPFYAQSSQGYGFGIQYPHLMQY 252
                  NYYGVYGGQQFSPYYSANG+SGPAGMFQNLYP+YAQSSQGYGFGIQYPHLMQY
Sbjct: 183 PL-----NYYGVYGGQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQY 242

Query: 253 PYLSQQHGSTGILSLPGSSATGTTNAGATATTIMAVGSGPSQASSAVASEQNSSELISTG 309
           PYL QQHGSTGILSLPGS+A GTT +G TAT+  AVGSGPSQASSAVASE NSSELISTG
Sbjct: 243 PYLPQQHGSTGILSLPGSNALGTTTSGTTATSTTAVGSGPSQASSAVASEPNSSELISTG 278

[Close]

BLAST of Lag0015617 vs. NCBI nr
Match: XP_022960510.1 (RNA-binding protein 24 isoform X2 [Cucurbita moschata])

HSP 1 Score: 368.6 bits (945), Expect = 5.2e-98
Identity = 207/281 (73.67%), Postives = 219/281 (77.94%), Query Frame = 0


Query: 34  LGPQYNNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF 93
           +G QY NDTTFTKIFVGGLAWETQRHTMRR+FEQFGEILEAVVITDKNTGRSKGYGFVTF
Sbjct: 13  VGGQY-NDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNTGRSKGYGFVTF 72

Query: 94  KDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPPPPTPQQHGGGGGGRFRGASGIVTPL 153
           KDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP      QH  GGGGRFRG SGIVTP 
Sbjct: 73  KDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP------QH--GGGGRFRGPSGIVTP- 132

Query: 154 LTMSLHHLTFIS----PLVNIPSLFQLMGMLDIRKTEFIHWCECLNNYYGVYGGQQFSPY 213
                +H++  S    P    P      G     +           NYYGVYGGQQFSPY
Sbjct: 133 ---PAYHVSSSSYVHQPTTQYPFPLSAYGYSGYSQDRIYPM-----NYYGVYGGQQFSPY 192

Query: 214 YSANGISGPAGMFQNLYPFYAQSSQGYGFGIQYPHLMQYPYLSQQHGSTGILSLPGSSAT 273
           YSAN I GPAGMFQNLYP+YAQSS GY FG+QYPHLMQYPYL QQHGSTGILSLP S+AT
Sbjct: 193 YSANAIPGPAGMFQNLYPYYAQSSHGYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTAT 252

Query: 274 GTTNAG-ATATTIMAV-GSGPSQASSAVASEQNSSELISTG 309
           GTT+AG AT TT MAV GSGP Q SSAVA+E NSSE+ISTG
Sbjct: 253 GTTSAGAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 275

[Close]

BLAST of Lag0015617 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.2e-27
Identity = 86/224 (38.39%), Postives = 111/224 (49.55%), Query Frame = 0


Query: 41  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 100
           DT  TK+FVGGLAW+T +  M  +F ++G+ILEAV+I+DK T RSKGYGFVTFKD  AA 
Sbjct: 13  DTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAAT 72

Query: 101 RACQNPSPVIDGRRANCNLASLGA--HKPPPPTPQQHGGGGGGR-----------FRGAS 160
           RAC++ +P+I+GRRANCNLASLG    K P  T  Q G   G R           +   S
Sbjct: 73  RACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPKNGNRATPPHVGNHSQWYYPS 132

Query: 161 GIVTPLLTMSLHHLTFISPLVNIPSLFQLMGMLDIRKTEFIHWCECLNNYYGVYGGQQFS 220
           G          H      P    PS +    M   +K  ++     +N YY     Q  S
Sbjct: 133 GFTNQQHQQQNHQAV---PFYGYPSAYVAPNMTFNQKVGYVGG-TYMNGYYAQMQPQPQS 192

Query: 221 ----PYYSAN---------GISGPAGMFQNLYPFYAQSSQGYGF 239
                YY  +         G + P   F  +YP++   SQ  GF
Sbjct: 193 QPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPYH--QSQAIGF 230

[Close]

BLAST of Lag0015617 vs. ExPASy Swiss-Prot
Match: Q76LC6 (RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.5e-26
Identity = 88/220 (40.00%), Postives = 117/220 (53.18%), Query Frame = 0


Query: 41  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 100
           DTT+TKIFVGGL + T   ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT  D  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66

Query: 101 RACQNPSPVIDGRRANCNLASLGAHKPPPPTPQQHGGGGGGRFRGASGIVTP--LLTMSL 160
           RAC++P+P+IDGR+AN NLA LGA     P   Q G   G      + I  P  + T  +
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGA----KPRVMQPGFTFGVPQIHPAFIQRPYGIPTHYV 126

Query: 161 HHLTFISPLVNIPSLFQLMGMLDIRKTEFIHWCECLNNYYGVYGGQQFSPYYSANGISGP 220
           +   F+ P V IP + Q         + +I            Y G  ++ Y SA   +  
Sbjct: 127 YPQAFMQPSVVIPHI-QPTATSATASSPYID-----------YTGAAYAQYASAATAAAA 186

Query: 221 AGMFQNLYPFYAQ-SSQGYGFGIQYPHLMQYPYLSQQHGS 258
           A   Q  YP+ A  ++ GY     Y + MQ P  +   GS
Sbjct: 187 AAYEQ--YPYAASPAATGYVAAAGYGYAMQQPLATAAPGS 208

[Close]

BLAST of Lag0015617 vs. ExPASy Swiss-Prot
Match: Q5ZJX4 (RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 5.5e-26
Identity = 56/84 (66.67%), Postives = 69/84 (82.14%), Query Frame = 0


Query: 41  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 100
           DTTFTKIFVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  AA 
Sbjct: 7   DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 101 RACQNPSPVIDGRRANCNLASLGA 125
           RAC++P+P+IDGR+AN NLA LGA
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGA 90

[Close]

BLAST of Lag0015617 vs. ExPASy Swiss-Prot
Match: Q9H0Z9 (RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2)

HSP 1 Score: 119.4 bits (298), Expect = 7.2e-26
Identity = 56/84 (66.67%), Postives = 69/84 (82.14%), Query Frame = 0


Query: 41  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 100
           DTTFTKIFVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  AA 
Sbjct: 30  DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89

Query: 101 RACQNPSPVIDGRRANCNLASLGA 125
           RAC++P+P+IDGR+AN NLA LGA
Sbjct: 90  RACKDPNPIIDGRKANVNLAYLGA 113

[Close]

BLAST of Lag0015617 vs. ExPASy Swiss-Prot
Match: Q62176 (RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2)

HSP 1 Score: 119.4 bits (298), Expect = 7.2e-26
Identity = 56/84 (66.67%), Postives = 69/84 (82.14%), Query Frame = 0


Query: 41  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 100
           DTTFTKIFVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  AA 
Sbjct: 28  DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAD 87

Query: 101 RACQNPSPVIDGRRANCNLASLGA 125
           RAC++P+P+IDGR+AN NLA LGA
Sbjct: 88  RACKDPNPIIDGRKANVNLAYLGA 111

[Close]

BLAST of Lag0015617 vs. ExPASy TrEMBL
Match: A0A1S3CBZ0 (RNA-binding protein 24-B OS=Cucumis melo OX=3656 GN=LOC103498947 PE=4 SV=1)

HSP 1 Score: 414.8 bits (1065), Expect = 3.0e-112
Identity = 229/300 (76.33%), Postives = 243/300 (81.00%), Query Frame = 0


Query: 13  QHRQFHNISNSNSSSSTTTLGLGPQYNNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEIL 72
           Q RQFHNI++SN+SSS   L LG QY NDTTFTKIFVGGLAWETQRHTMRRYFEQFGEIL
Sbjct: 3   QQRQFHNINSSNNSSS---LSLGGQY-NDTTFTKIFVGGLAWETQRHTMRRYFEQFGEIL 62

Query: 73  EAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPPPPTP 132
           EAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP PPTP
Sbjct: 63  EAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTP 122

Query: 133 QQHGGGGGGRFRGASGIVTPLLTMSLHHLTFISPLVNIPSLFQL----MGMLDIRKTEFI 192
           Q    G GGRFRGASGIVTP      +H++  S +    S +       G     +    
Sbjct: 123 QH---GVGGRFRGASGIVTP----PAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIY 182

Query: 193 HWCECLNNYYGVYGGQQFSPYYSANGISGPAGMFQNLYPFYAQSSQGYGFGIQYPHLMQY 252
                  NYYGVYGGQQFSPYYSANG+SGPAGMFQNLYP+YAQSSQGYGFGIQYPHLMQY
Sbjct: 183 PL-----NYYGVYGGQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQY 242

Query: 253 PYLSQQHGSTGILSLPGSSATGTTNAGATATTIMAVGSGPSQASSAVASEQNSSELISTG 309
           PYL QQHGSTGILSLPGS+A GTT +G TAT+  AVGSGPSQASSAVASE NSSELISTG
Sbjct: 243 PYLPQQHGSTGILSLPGSNALGTTTSGTTATSTTAVGSGPSQASSAVASEPNSSELISTG 286

[Close]

BLAST of Lag0015617 vs. ExPASy TrEMBL
Match: A0A0A0K998 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G087740 PE=4 SV=1)

HSP 1 Score: 412.9 bits (1060), Expect = 1.2e-111
Identity = 228/300 (76.00%), Postives = 242/300 (80.67%), Query Frame = 0


Query: 13  QHRQFHNISNSNSSSSTTTLGLGPQYNNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEIL 72
           Q RQFHNI++SN+SSS   L LG QY NDTTFTKIFVGGLAWETQRHTMRRYFEQFGEIL
Sbjct: 3   QQRQFHNINSSNNSSS---LSLGGQY-NDTTFTKIFVGGLAWETQRHTMRRYFEQFGEIL 62

Query: 73  EAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPPPPTP 132
           EAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP PPTP
Sbjct: 63  EAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTP 122

Query: 133 QQHGGGGGGRFRGASGIVTPLLTMSLHHLTFISPLVNIPSLFQL----MGMLDIRKTEFI 192
           Q    G GGRFRGASGIVTP      +H++  S +    S +       G     +    
Sbjct: 123 QH---GVGGRFRGASGIVTP----PAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIY 182

Query: 193 HWCECLNNYYGVYGGQQFSPYYSANGISGPAGMFQNLYPFYAQSSQGYGFGIQYPHLMQY 252
                  NYYGVYGGQQFSPYYSANG+SGPAGMFQNLYP+YAQSSQGYGFG+QYPHLMQY
Sbjct: 183 PL-----NYYGVYGGQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQY 242

Query: 253 PYLSQQHGSTGILSLPGSSATGTTNAGATATTIMAVGSGPSQASSAVASEQNSSELISTG 309
           PYL QQH STGILSLPGS+A GTT +G TATTI AVGSGPSQAS AVASE NSSELISTG
Sbjct: 243 PYLPQQHSSTGILSLPGSNALGTTTSGTTATTITAVGSGPSQASPAVASEPNSSELISTG 286

[Close]

BLAST of Lag0015617 vs. ExPASy TrEMBL
Match: A0A5A7TA32 (RNA-binding protein 24-B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001330 PE=4 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 1.1e-104
Identity = 221/300 (73.67%), Postives = 235/300 (78.33%), Query Frame = 0


Query: 13  QHRQFHNISNSNSSSSTTTLGLGPQYNNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEIL 72
           Q RQFHNI++SN+SSS   L LG QY NDTTFTKIFVGGLAWETQRHTMRRYFEQFGEIL
Sbjct: 3   QQRQFHNINSSNNSSS---LSLGGQY-NDTTFTKIFVGGLAWETQRHTMRRYFEQFGEIL 62

Query: 73  EAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPPPPTP 132
           EAVVITDKNTGRS        KDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP PPTP
Sbjct: 63  EAVVITDKNTGRS--------KDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTP 122

Query: 133 QQHGGGGGGRFRGASGIVTPLLTMSLHHLTFISPLVNIPSLFQL----MGMLDIRKTEFI 192
           Q    G GGRFRGASGIVTP      +H++  S +    S +       G     +    
Sbjct: 123 QH---GVGGRFRGASGIVTP----PAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIY 182

Query: 193 HWCECLNNYYGVYGGQQFSPYYSANGISGPAGMFQNLYPFYAQSSQGYGFGIQYPHLMQY 252
                  NYYGVYGGQQFSPYYSANG+SGPAGMFQNLYP+YAQSSQGYGFGIQYPHLMQY
Sbjct: 183 PL-----NYYGVYGGQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQY 242

Query: 253 PYLSQQHGSTGILSLPGSSATGTTNAGATATTIMAVGSGPSQASSAVASEQNSSELISTG 309
           PYL QQHGSTGILSLPGS+A GTT +G TAT+  AVGSGPSQASSAVASE NSSELISTG
Sbjct: 243 PYLPQQHGSTGILSLPGSNALGTTTSGTTATSTTAVGSGPSQASSAVASEPNSSELISTG 278

[Close]

BLAST of Lag0015617 vs. ExPASy TrEMBL
Match: A0A6J1H998 (RNA-binding protein 24 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461225 PE=4 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 2.5e-98
Identity = 207/281 (73.67%), Postives = 219/281 (77.94%), Query Frame = 0


Query: 34  LGPQYNNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF 93
           +G QY NDTTFTKIFVGGLAWETQRHTMRR+FEQFGEILEAVVITDKNTGRSKGYGFVTF
Sbjct: 13  VGGQY-NDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNTGRSKGYGFVTF 72

Query: 94  KDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPPPPTPQQHGGGGGGRFRGASGIVTPL 153
           KDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP      QH  GGGGRFRG SGIVTP 
Sbjct: 73  KDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP------QH--GGGGRFRGPSGIVTP- 132

Query: 154 LTMSLHHLTFIS----PLVNIPSLFQLMGMLDIRKTEFIHWCECLNNYYGVYGGQQFSPY 213
                +H++  S    P    P      G     +           NYYGVYGGQQFSPY
Sbjct: 133 ---PAYHVSSSSYVHQPTTQYPFPLSAYGYSGYSQDRIYPM-----NYYGVYGGQQFSPY 192

Query: 214 YSANGISGPAGMFQNLYPFYAQSSQGYGFGIQYPHLMQYPYLSQQHGSTGILSLPGSSAT 273
           YSAN I GPAGMFQNLYP+YAQSS GY FG+QYPHLMQYPYL QQHGSTGILSLP S+AT
Sbjct: 193 YSANAIPGPAGMFQNLYPYYAQSSHGYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTAT 252

Query: 274 GTTNAG-ATATTIMAV-GSGPSQASSAVASEQNSSELISTG 309
           GTT+AG AT TT MAV GSGP Q SSAVA+E NSSE+ISTG
Sbjct: 253 GTTSAGAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 275

[Close]

BLAST of Lag0015617 vs. ExPASy TrEMBL
Match: A0A6J1HB82 (RNA-binding protein 24 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461225 PE=4 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 3.3e-98
Identity = 207/282 (73.40%), Postives = 219/282 (77.66%), Query Frame = 0


Query: 34  LGPQYNNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF 93
           +G QY NDTTFTKIFVGGLAWETQRHTMRR+FEQFGEILEAVVITDKNTGRSKGYGFVTF
Sbjct: 13  VGGQY-NDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNTGRSKGYGFVTF 72

Query: 94  KDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPPPPTPQQHGGGGGGRFRGASGIVTPL 153
           KDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP      QH  GGGGRFRG SGIVTP 
Sbjct: 73  KDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP------QH--GGGGRFRGPSGIVTP- 132

Query: 154 LTMSLHHLTFIS----PLVNIPSLFQLMGMLDIRKTEFIHWCECLNNYYGVYGGQQFSPY 213
                +H++  S    P    P      G     +           NYYGVYGGQQFSPY
Sbjct: 133 ---PAYHVSSSSYVHQPTTQYPFPLSAYGYSGYSQDRIYPM-----NYYGVYGGQQFSPY 192

Query: 214 YSANGISGPAGMFQNLYPFYAQSSQGYGFGIQYPHLMQYPYLSQQHGSTGILSLPGSSAT 273
           YSAN I GPAGMFQNLYP+YAQSS GY FG+QYPHLMQYPYL QQHGSTGILSLP S+AT
Sbjct: 193 YSANAIPGPAGMFQNLYPYYAQSSHGYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTAT 252

Query: 274 GTTNAG--ATATTIMAV-GSGPSQASSAVASEQNSSELISTG 309
           GTT+AG  AT TT MAV GSGP Q SSAVA+E NSSE+ISTG
Sbjct: 253 GTTSAGAAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 276

[Close]

BLAST of Lag0015617 vs. TAIR 10
Match: AT2G46780.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 198.4 bits (503), Expect = 8.6e-51
Identity = 141/328 (42.99%), Postives = 172/328 (52.44%), Query Frame = 0


Query: 35  GPQYNNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK 94
           G     DT  TKIFVGGLAWETQR TMRRYFEQFGEI+EAVVITDKNTGRSKGYGFVTFK
Sbjct: 12  GNNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFK 71

Query: 95  DPDAAIRACQNPSPVIDGRRANCNLASLGAHKPPPPTPQQHGGGGGGRFRGAS---GIVT 154
           + +AA+RACQN +PVIDGRRANCNLA LGA KP PPT  +H   G GRFR      G+V 
Sbjct: 72  EAEAAMRACQNMNPVIDGRRANCNLACLGAQKPRPPTSPRH---GTGRFRSPGSGVGLVA 131

Query: 155 P-------LLTMSLHHLTFISPLVNIPSLFQLMGMLDIRKTEFIHWCECLNNYYG--VYG 214
           P         + +  H          P  +   G     +           NYY   +YG
Sbjct: 132 PSPQFRGSSSSSAFVHQQQQQHTAQFPFPYSTYGFSGYSQEGMYPM-----NYYNHHLYG 191

Query: 215 GQQFSPYYSANGISGPAGMFQNLYPFY---------------AQSSQGYGFGIQY----- 274
           GQQFSP Y  +  +G  GMF   YP+Y                Q+    GF  QY     
Sbjct: 192 GQQFSP-YMGHPSAGSTGMFHGFYPYYPQYNAAQSSNQAQAQVQAQHHQGFSFQYTAPPA 251

Query: 275 PHLMQYPYL------------SQQHGSTGILSLPGS-----------SATGTTNAGATAT 308
           P L+QYPYL            S Q     ILSLP S           S++ +T+A  TAT
Sbjct: 252 PPLLQYPYLPHQPHFSSQQQFSSQQPPPPILSLPTSLALSLPSSSSPSSSTSTSAATTAT 311

[Close]

BLAST of Lag0015617 vs. TAIR 10
Match: AT1G76460.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 157.5 bits (397), Expect = 1.7e-38
Identity = 81/119 (68.07%), Postives = 92/119 (77.31%), Query Frame = 0


Query: 33  GLGPQYNN----DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGY 92
           G G  Y N    DTTFTK+FVGGLAWETQ  T+R++FEQ+GEILEAVVI DKNTGRSKGY
Sbjct: 8   GSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGY 67

Query: 93  GFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPPPPTPQQHGGGGGGRFRGAS 148
           GFVTF+DP+AA RAC +P+P+IDGRRANCNLASLG  +P PP P        GR R AS
Sbjct: 68  GFVTFRDPEAARRACADPTPIIDGRRANCNLASLG--RPRPPLPYAVIPNMPGRLRPAS 124

[Close]

BLAST of Lag0015617 vs. TAIR 10
Match: AT1G22910.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 155.2 bits (391), Expect = 8.4e-38
Identity = 110/250 (44.00%), Postives = 134/250 (53.60%), Query Frame = 0


Query: 32  LGLGPQYNNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFV 91
           +GLG     DTT+TK+FVGGLAWET + TM+++FEQFGEILEAVVITDK +GRSKGYGFV
Sbjct: 5   IGLG-----DTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFV 64

Query: 92  TFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPPPPTPQQHGGGGGGRFRGASGIVT 151
           TF++ +AA  AC + +PVIDGRRANCNLASLG  +  P TP  HGGGG         I  
Sbjct: 65  TFREAEAARSACVDATPVIDGRRANCNLASLGLQRSKPSTP-NHGGGG--------RINN 124

Query: 152 PLLTMSLHHLTFISPLVNIPSLFQLMGMLDIRKTEFI----HWCECLNNYYGVYG---GQ 211
             + MS     F  P    P  F     L +    +      +     N YG+YG   G 
Sbjct: 125 MRVMMSTMQTGFGPPPPPQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGG 184

Query: 212 QFSPYYSAN-GISGPAGMFQNLYPFYAQSSQGYGFGIQ-------YPHLMQY-------P 260
           Q+  Y + N G  G      +  PFY     G+G G+Q       Y HL  Y       P
Sbjct: 185 QYGVYGNRNSGGGGLTAAAASATPFY-PCGGGHG-GVQFSQPQPFYHHLSSYNPHHYSPP 238

[Close]

BLAST of Lag0015617 vs. TAIR 10
Match: AT1G78260.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 154.8 bits (390), Expect = 1.1e-37
Identity = 99/240 (41.25%), Postives = 131/240 (54.58%), Query Frame = 0


Query: 41  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 100
           DTT+TK+FVGGLAWET    MRRYFEQFGEILEAV+ITDKNTG+SKGYGFVTF++ D+A 
Sbjct: 13  DTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSAT 72

Query: 101 RACQNPSPVIDGRRANCNLASLGAHKPPPP-------TPQQHGGGGGGRFRGASGIVTPL 160
           RA  +P+PVIDGR+ANCN+AS G  +P PP       +P Q+  GG   + G +  + P 
Sbjct: 73  RAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQTGSPSQYQSGGPSTYTGMAAPLPPA 132

Query: 161 LTMSLHHLTFISPLVNIPSLFQLMGMLDIRKTEFIHWCECLNNYYGVYGGQQFSPYYSAN 220
               L + ++       P  F   G         +   +       +YGG   SP  S++
Sbjct: 133 AAPQLMYPSY--GYTYNPDQF---GYHQALYNTQLQQAQYYQQQQQLYGGGATSP--SSS 192

Query: 221 GISGPAGMFQNLYPFYAQSSQGYGFGIQYPHLMQYPYLSQQH-----GSTGILSLPGSSA 269
           G    A +  + Y +Y  S Q      Q+ H +  PY  QQH      S   L  P +S+
Sbjct: 193 G----ATIMPSPY-YYGYSLQAPRVPYQHHHHLPQPYNPQQHHHQRFSSPSFLVYPSNSS 240

[Close]

BLAST of Lag0015617 vs. TAIR 10
Match: AT1G22910.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 154.8 bits (390), Expect = 1.1e-37
Identity = 112/258 (43.41%), Postives = 137/258 (53.10%), Query Frame = 0


Query: 32  LGLGPQYNNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFV 91
           +GLG     DTT+TK+FVGGLAWET + TM+++FEQFGEILEAVVITDK +GRSKGYGFV
Sbjct: 5   IGLG-----DTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFV 64

Query: 92  TFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPPPPTPQQHGGGGGGRFRGASGIVT 151
           TF++ +AA  AC + +PVIDGRRANCNLASLG  +  P TP  HGGGG         I  
Sbjct: 65  TFREAEAARSACVDATPVIDGRRANCNLASLGLQRSKPSTP-NHGGGG--------RINN 124

Query: 152 PLLTMSLHHLTFISPLVNIPSLFQLMGMLDIRKTEFI----HWCECLNNYYGVYG---GQ 211
             + MS     F  P    P  F     L +    +      +     N YG+YG   G 
Sbjct: 125 MRVMMSTMQTGFGPPPPPQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGG 184

Query: 212 QFSPYYSAN-GISGPAGMFQNLYPFYAQSSQGYGFGIQ-------YPHLMQY-------P 268
           Q+  Y + N G  G      +  PFY     G+G G+Q       Y HL  Y       P
Sbjct: 185 QYGVYGNRNSGGGGLTAAAASATPFY-PCGGGHG-GVQFSQPQPFYHHLSSYNPHHYSPP 244

The following BLAST results are available for this feature:

BLAST of Lag0015617 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906691.1	4.4e-113	77.33	RNA-binding protein 24-B [Benincasa hispida]	[more]
XP_008460001.1	6.3e-112	76.33	PREDICTED: RNA-binding protein 24-B [Cucumis melo]	[more]
XP_004140591.1	2.4e-111	76.00	RNA-binding protein 24 [Cucumis sativus] >KGN46345.1 hypothetical protein Csa_00...	[more]
KAA0039913.1	2.2e-104	73.67	RNA-binding protein 24-B [Cucumis melo var. makuwa] >TYK24587.1 RNA-binding prot...	[more]
XP_022960510.1	5.2e-98	73.67	RNA-binding protein 24 isoform X2 [Cucurbita moschata]	[more]

BLAST of Lag0015617 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1S3	2.2e-27	38.39	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q76LC6	2.5e-26	40.00	RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1	[more]
Q5ZJX4	5.5e-26	66.67	RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1	[more]
Q9H0Z9	7.2e-26	66.67	RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2	[more]
Q62176	7.2e-26	66.67	RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2	[more]

BLAST of Lag0015617 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CBZ0	3.0e-112	76.33	RNA-binding protein 24-B OS=Cucumis melo OX=3656 GN=LOC103498947 PE=4 SV=1	[more]
A0A0A0K998	1.2e-111	76.00	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G087740 PE=4 SV...	[more]
A0A5A7TA32	1.1e-104	73.67	RNA-binding protein 24-B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A6J1H998	2.5e-98	73.67	RNA-binding protein 24 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461225 ...	[more]
A0A6J1HB82	3.3e-98	73.40	RNA-binding protein 24 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461225 ...	[more]

BLAST of Lag0015617 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46780.1	8.6e-51	42.99	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G76460.1	1.7e-38	68.07	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.1	8.4e-38	44.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G78260.2	1.1e-37	41.25	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.3	1.1e-37	43.41	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 46..118 e-value: 2.9E-24 score: 96.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 47..104 e-value: 5.2E-17 score: 61.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 45..122 score: 16.517189
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..144 e-value: 5.6E-31 score: 109.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	PANTHER	PTHR11176:SF33	SUBFAMILY NOT NAMED	coord: 36..292
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 45..120 e-value: 1.2665E-45 score: 147.377
IPR037366	BOULE/DAZ family	PANTHER	PTHR11176	BOULE-RELATED	coord: 36..292
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 8..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0015617.1	Lag0015617.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding