Lag0015595 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0015595
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr12: 17203479 .. 17203820 (+)
RNA-Seq Expression	Lag0015595
Synteny	Lag0015595

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATTCCCTTAACCCTAAATTTATCTATTCTCCTCCCTCTCCTTCTTCCCCAAATTTCGACCATCCCTCCACCGCCGCCTTTCACTCTTTGATGGCCAACCACCGTAGATTCTTCAACGGCGAATTGAAACCCACAAAGCGCCGCCATGAACAACCCGACGCCGTTTTCGTTTCTAGAGAGTTGAACGAAGTCGATCCACCGCCCCCGGATGGAGGTTATATCGCCGTCGTCGCCGAGCACGGCAGATCCGTCTTCCCCAAGTTCGCTGGCTGCAGTGTATTTGGTCGCACCACCGGCGGGCCTCGCCAAGAGAAACCCAACAAGCGTCGATCGGAGTAA

mRNA sequence

ATGCATTCCCTTAACCCTAAATTTATCTATTCTCCTCCCTCTCCTTCTTCCCCAAATTTCGACCATCCCTCCACCGCCGCCTTTCACTCTTTGATGGCCAACCACCGTAGATTCTTCAACGGCGAATTGAAACCCACAAAGCGCCGCCATGAACAACCCGACGCCGTTTTCGTTTCTAGAGAGTTGAACGAAGTCGATCCACCGCCCCCGGATGGAGGTTATATCGCCGTCGTCGCCGAGCACGGCAGATCCGTCTTCCCCAAGTTCGCTGGCTGCAGTGTATTTGGTCGCACCACCGGCGGGCCTCGCCAAGAGAAACCCAACAAGCGTCGATCGGAGTAA

Coding sequence (CDS)

ATGCATTCCCTTAACCCTAAATTTATCTATTCTCCTCCCTCTCCTTCTTCCCCAAATTTCGACCATCCCTCCACCGCCGCCTTTCACTCTTTGATGGCCAACCACCGTAGATTCTTCAACGGCGAATTGAAACCCACAAAGCGCCGCCATGAACAACCCGACGCCGTTTTCGTTTCTAGAGAGTTGAACGAAGTCGATCCACCGCCCCCGGATGGAGGTTATATCGCCGTCGTCGCCGAGCACGGCAGATCCGTCTTCCCCAAGTTCGCTGGCTGCAGTGTATTTGGTCGCACCACCGGCGGGCCTCGCCAAGAGAAACCCAACAAGCGTCGATCGGAGTAA

Protein sequence

MHSLNPKFIYSPPSPSSPNFDHPSTAAFHSLMANHRRFFNGELKPTKRRHEQPDAVFVSRELNEVDPPPPDGGYIAVVAEHGRSVFPKFAGCSVFGRTTGGPRQEKPNKRRSE

Homology

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BLAST of Lag0015595 vs. NCBI nr
Match: XP_008465027.1 (PREDICTED: uncharacterized protein At1g15400 [Cucumis melo] >KAA0046761.1 uncharacterized protein E6C27_scaffold216G00440 [Cucumis melo var. makuwa] >TYK29686.1 uncharacterized protein E5676_scaffold64G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 4.6e-04
Identity = 42/105 (40.00%), Postives = 47/105 (44.76%), Query Frame = 0


Query: 37  RFFNGELKPTKRRHE-QPDAVFVSREL-------------------------NEVDPPPP 96
           RF +GELKPTKR HE Q + VF+S EL                         + + P PP
Sbjct: 24  RFLSGELKPTKRFHEDQHNVVFLSGELRPSRRVGSGGGPSFERTRSSGAYKMDAISPSPP 83

Query: 97  DGGYIAVVAEHGRSVFPKFAG---CSVFGRTTGGPRQEKPNKRRS 113
                      G    PKFAG   C VFGR  GG RQ K NKRRS
Sbjct: 84  --------PSRGDPSSPKFAGCGFCGVFGRPVGGNRQHKSNKRRS 120

The following BLAST results are available for this feature:

BLAST of Lag0015595 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008465027.1	4.6e-04	40.00	PREDICTED: uncharacterized protein At1g15400 [Cucumis melo] >KAA0046761.1 unchar...	[more]

BLAST of Lag0015595 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0015595.1	Lag0015595.1	mRNA