Lag0015594 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0015594
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	TMV resistance protein N
Location	chr12: 17182214 .. 17183346 (-)
RNA-Seq Expression	Lag0015594
Synteny	Lag0015594

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGGAGAAATAATCAATATGTTGAAAGAGAATTCCGTAAGTAGCCTCTCACAAAGTAGTTTTATTTACTTCCAAGACTTTTGTTAATAATGTTAAACTACTGGATTTATGACTTTGCAGGGAACCGATGCAGTTAAAGCAATAAAGCTAGACTTGCCTAACGTCGTCCAAAGTAGGTTGTGGATGATTGAAGAAATATTCAATTTGGAAGAGAATTCCGTCAGTAATCTCACACAAAGTAGTTTTATTATTTTTTTTTTTGAAATAAAGTAGTTTTATTTACTTACTTCCAAGACTTTTGTTAATAATGTTAAATTACTGGATTTATGATTTTGTAGGGAATCGATGCAGTTAAAGCAATAAAGCTAGACTTGTCTAACGTGGTCCAGGAATGGAAGCCAATTGATCCAAAAGTTTTTAGAAACATGAAAAATCTTAGATTGCTTCTCCTACGAAACTCAGTATTTTCTAGAAATATATTTGAATATTTACCCAATAAGTTACGGGGGATATATTGTCGTGGATTGAGAATTGGACAAGAAATGAGGAATAGCCACGACGTCAAACATTTGGGGAACAAATTTTAGGTAAATTAATTATACCGCTTCTACTTGTGTGATAGATTTTTTTGGGAAGTGTATTGATTCATTTTCTTTATTTGTTTCTTTATCATGTGTCATAGAATTGCAAGCCTTTGAAGCATGTTGATCTCAGTTTCTCTTACTTGGAGAAAATTCCTGACTTTATGCTAAATTCCCTTGAAGTTCTGAATCTGTCTGGATGCAAAAAAACTTGAAGAAATTCCTGACTTATCTGCATCATCAAATCTTAAGAAATTGTATCTTAGAGGATGCTCAAATTTGAGAATAATTCAAGAGTCGGTTGGTTCTCTTAGTAAGCTTATTACATTGAACCTTCAAGGTTGTCTCAACCTAAAAAATCTTCCAACTTACTTCATGTTAAAGTCTCTTAATGTTCTGATTCTCGACTTTTGTAGAAAGCTTGAACATCTACCACAATTTGATGAAAACATGAAATCTTTAAGGAAGATGAAGTTGAAAGGAACTTCCATAAAAGAGTTACCTCCAACAACTGGATATCTTATTGGGCTTGAGATTTTGAGTCTCTAG

mRNA sequence

ATGACTGGAGAAATAATCAATATGTTGAAAGAGAATTCCGGAATCGATGCAGTTAAAGCAATAAAGCTAGACTTGTCTAACGTGGTCCAGGAATGGAAGCCAATTGATCCAAAAAATTGCAAGCCTTTGAAGCATGTTGATCTCAGTTTCTCTTACTTGGAGAAAATTCCTGACTTTATGCTAAATTCCCTTGAAGTTCTGAATCTAAAGCTTGAACATCTACCACAATTTGATGAAAACATGAAATCTTTAAGGAAGATGAAGTTGAAAGGAACTTCCATAAAAGAGTTACCTCCAACAACTGGATATCTTATTGGGCTTGAGATTTTGAGTCTCTAG

Coding sequence (CDS)

ATGACTGGAGAAATAATCAATATGTTGAAAGAGAATTCCGGAATCGATGCAGTTAAAGCAATAAAGCTAGACTTGTCTAACGTGGTCCAGGAATGGAAGCCAATTGATCCAAAAAATTGCAAGCCTTTGAAGCATGTTGATCTCAGTTTCTCTTACTTGGAGAAAATTCCTGACTTTATGCTAAATTCCCTTGAAGTTCTGAATCTAAAGCTTGAACATCTACCACAATTTGATGAAAACATGAAATCTTTAAGGAAGATGAAGTTGAAAGGAACTTCCATAAAAGAGTTACCTCCAACAACTGGATATCTTATTGGGCTTGAGATTTTGAGTCTCTAG

Protein sequence

MTGEIINMLKENSGIDAVKAIKLDLSNVVQEWKPIDPKNCKPLKHVDLSFSYLEKIPDFMLNSLEVLNLKLEHLPQFDENMKSLRKMKLKGTSIKELPPTTGYLIGLEILSL

Homology

[Close]

BLAST of Lag0015594 vs. NCBI nr
Match: XP_008444002.1 (PREDICTED: TMV resistance protein N [Cucumis melo] >KAA0046813.1 TMV resistance protein N [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 2.6e-07
Identity = 38/65 (58.46%), Postives = 50/65 (76.92%), Query Frame = 0


Query: 53  LEKIPDFM-LNSLEVLNL----KLEHLPQFDENMKSLRKMKLKGTSIKELPPTTGYLIGL 112
           LE++P  + L SL+ L+L    KLE LP+FDENMKSLR+M LKGT+I++LP +  YLIGL
Sbjct: 870 LEELPSCLRLKSLDSLSLTNCYKLEQLPEFDENMKSLREMNLKGTAIRKLPSSIRYLIGL 929

[Close]

BLAST of Lag0015594 vs. NCBI nr
Match: TYK06440.1 (TMV resistance protein N [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 2.6e-07
Identity = 38/65 (58.46%), Postives = 50/65 (76.92%), Query Frame = 0


Query: 53  LEKIPDFM-LNSLEVLNL----KLEHLPQFDENMKSLRKMKLKGTSIKELPPTTGYLIGL 112
           LE++P  + L SL+ L+L    KLE LP+FDENMKSLR+M LKGT+I++LP +  YLIGL
Sbjct: 844 LEELPSCLRLKSLDSLSLTNCYKLEQLPEFDENMKSLREMNLKGTAIRKLPSSIRYLIGL 903

[Close]

BLAST of Lag0015594 vs. NCBI nr
Match: KGN51651.2 (hypothetical protein Csa_008503 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 5.8e-07
Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 0


Query: 53  LEKIPDFM-LNSLEVLNL----KLEHLPQFDENMKSLRKMKLKGTSIKELPPTTGYLIGL 112
           LEK+P  + L SL+ L+     KLE LP+FDENMKSLR M L GT+I+ LP + GYLIGL
Sbjct: 869 LEKLPSSLKLKSLDSLSFTNCYKLEQLPEFDENMKSLRVMNLNGTAIRVLPSSIGYLIGL 928

[Close]

BLAST of Lag0015594 vs. NCBI nr
Match: XP_031741747.1 (TMV resistance protein N [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 5.8e-07
Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 0


Query: 53  LEKIPDFM-LNSLEVLNL----KLEHLPQFDENMKSLRKMKLKGTSIKELPPTTGYLIGL 112
           LEK+P  + L SL+ L+     KLE LP+FDENMKSLR M L GT+I+ LP + GYLIGL
Sbjct: 842 LEKLPSSLKLKSLDSLSFTNCYKLEQLPEFDENMKSLRVMNLNGTAIRVLPSSIGYLIGL 901

[Close]

BLAST of Lag0015594 vs. NCBI nr
Match: KGN65609.2 (hypothetical protein Csa_019785 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 9.9e-07
Identity = 37/65 (56.92%), Postives = 49/65 (75.38%), Query Frame = 0


Query: 53  LEKIPDFM-LNSLEVLNL----KLEHLPQFDENMKSLRKMKLKGTSIKELPPTTGYLIGL 112
           LE++P  + L SL+ L+L    K+E LP+FDENMKSLR+M LKGT+I++LP +  YLIGL
Sbjct: 837 LEELPSCLRLKSLDSLSLTNCYKIEQLPEFDENMKSLREMNLKGTAIRKLPTSIRYLIGL 896

[Close]

BLAST of Lag0015594 vs. ExPASy Swiss-Prot
Match: V9M2S5 (Disease resistance protein RPV1 OS=Vitis rotundifolia OX=103349 GN=RPV1 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.9e-06
Identity = 35/80 (43.75%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 39   NCKPLKHVDLSFSYLEKIPDFM--LNSLEVLNL----KLEHLPQFDENMKSLRKMKLKGT 98
            N K L  + LS + ++ +PD +  L SLE L+L    K E  P+   NMKSLR++ L+ T
Sbjct: 1031 NMKSLLQLILSNTAIKDLPDSIGDLESLEYLHLSVCSKFEKFPEKGGNMKSLRELGLRNT 1090

Query: 99   SIKELPPTTGYLIGLEILSL 113
            +IK+LP + G L  LE+LSL
Sbjct: 1091 AIKDLPDSIGDLESLEMLSL 1110

The following BLAST results are available for this feature:

BLAST of Lag0015594 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008444002.1	2.6e-07	58.46	PREDICTED: TMV resistance protein N [Cucumis melo] >KAA0046813.1 TMV resistance ...	[more]
TYK06440.1	2.6e-07	58.46	TMV resistance protein N [Cucumis melo var. makuwa]	[more]
KGN51651.2	5.8e-07	58.46	hypothetical protein Csa_008503 [Cucumis sativus]	[more]
XP_031741747.1	5.8e-07	58.46	TMV resistance protein N [Cucumis sativus]	[more]
KGN65609.2	9.9e-07	56.92	hypothetical protein Csa_019785 [Cucumis sativus]	[more]

BLAST of Lag0015594 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
V9M2S5	3.9e-06	43.75	Disease resistance protein RPV1 OS=Vitis rotundifolia OX=103349 GN=RPV1 PE=1 SV=...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 2..112 e-value: 6.9E-12 score: 47.0
None	No IPR available	SUPERFAMILY	52058	L domain-like	coord: 21..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0015594.1	Lag0015594.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016071	mRNA metabolic process
biological_process	GO:0009451	RNA modification
cellular_component	GO:0110165	cellular anatomical entity