Lag0015563 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015563
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr12: 16310503 .. 16311235 (+)
RNA-Seq ExpressionLag0015563
SyntenyLag0015563
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCAAGAACAAGGGAACAGTCAGTGAACTCAAGAGCAGCAGGTTCAGGCTGAAGATGTTGTGCCAGAGATTCCACATCGTCGCCGTCGTAAGCAGAAGGCAGGATGGATCAAGGTAATCCGGACGAACACTCCATCGTCGTCGACGACGAAATCTGAAAAACAAAACTCTAAGAAAAAGACTAGGAAAAAAAGGAGATAGAGAAGAAGGCAGAGGAAGAAATTTTGACGAAACATTAAGAGGACAAGGGCAAGAGAGTTGTCGAAGCAACGGAGGAAGCAGAAGAGGAAGAAGCAGAAATTTCGTTCATTCGCTTCGTCAAGAACTTGCCAGAGCAAAATACAGGGAGATGCTGAAAAGTGATTTCTTGTTTGAAAAGGCTTCAGAAAGATTTACTGCATTTCTTGAGGGTTGGGATAGCAAATCATGGGTGGATTCAATTCTGTGCGAAACCAGATCCACTAAATTCAAACATTGTTCATGAATTTTACGCGAACATAGATGATCAAGAAGGATTCCAAGTCATGGTCCGAGGGGTGGCTGTTGATTGGAGCCTAGGAGCAATCAATTCTCTCTTCAACCTCCAAGACTTTCTGCATGCTGGGTTTAATGAGATGGTGGTGGCACCATCTAACGACCAATTGAACGCGGTGTCAGGGAGGTTGGCATTGAAGGGGCCCAATGGAGGTTGTCGAAGATGGAGAAGCGCACATTCCAAGCGGCTTATTTAA

mRNA sequence

ATGTGCAAGAACAAGGGAACAGTCAGTGAACTCAAGAGCAGCAGGTTCAGGCTGAAGATGTTGTGCCAGAGATTCCACATCGTCGCCGTCGTAAGCAGAAGGCAGGATGGATCAAGGCTTCAGAAAGATTTACTGCATTTCTTGAGGGTTGGGATAGCAAATCATGGGTGGATTCAATTCTGTGCGAAACCAGATCCACTAAATTCAAACATTGTTCATGAATTTTACGCGAACATAGATGATCAAGAAGGATTCCAAGTCATGGTCCGAGGGGTGGCTGTTGATTGGAGCCTAGGAGCAATCAATTCTCTCTTCAACCTCCAAGACTTTCTGCATGCTGGGTTTAATGAGATGGTGGTGGCACCATCTAACGACCAATTGAACGCGGTGTCAGGGAGGTTGGCATTGAAGGGGCCCAATGGAGGTTGTCGAAGATGGAGAAGCGCACATTCCAAGCGGCTTATTTAA

Coding sequence (CDS)

ATGTGCAAGAACAAGGGAACAGTCAGTGAACTCAAGAGCAGCAGGTTCAGGCTGAAGATGTTGTGCCAGAGATTCCACATCGTCGCCGTCGTAAGCAGAAGGCAGGATGGATCAAGGCTTCAGAAAGATTTACTGCATTTCTTGAGGGTTGGGATAGCAAATCATGGGTGGATTCAATTCTGTGCGAAACCAGATCCACTAAATTCAAACATTGTTCATGAATTTTACGCGAACATAGATGATCAAGAAGGATTCCAAGTCATGGTCCGAGGGGTGGCTGTTGATTGGAGCCTAGGAGCAATCAATTCTCTCTTCAACCTCCAAGACTTTCTGCATGCTGGGTTTAATGAGATGGTGGTGGCACCATCTAACGACCAATTGAACGCGGTGTCAGGGAGGTTGGCATTGAAGGGGCCCAATGGAGGTTGTCGAAGATGGAGAAGCGCACATTCCAAGCGGCTTATTTAA

Protein sequence

MCKNKGTVSELKSSRFRLKMLCQRFHIVAVVSRRQDGSRLQKDLLHFLRVGIANHGWIQFCAKPDPLNSNIVHEFYANIDDQEGFQVMVRGVAVDWSLGAINSLFNLQDFLHAGFNEMVVAPSNDQLNAVSGRLALKGPNGGCRRWRSAHSKRLI
Homology
BLAST of Lag0015563 vs. NCBI nr
Match: RYE21173.1 (hypothetical protein EOP45_09925 [Sphingobacteriaceae bacterium])

HSP 1 Score: 62.8 bits (151), Expect = 3.1e-06
Identity = 33/82 (40.24%), Postives = 49/82 (59.76%), Query Frame = 0

Query: 52  IANHGWIQFCAKPD-PLNSNIVHEFYANIDDQEGFQVMVRGVAVDWSLGAINSLFNLQD- 111
           I    W +FCA P+   N  +++EFYAN+ D E   V VRGV VD S+GAIN+L    D 
Sbjct: 47  IEGFSWRKFCATPEHKANVTLMYEFYANLPDHEDDVVTVRGVDVDCSVGAINALLGTPDI 106

Query: 112 -FLHAGFNEMVVAPSNDQLNAV 131
            F + G+ + +  P+ D++ +V
Sbjct: 107 EFENEGYRQWLRNPNLDEMLSV 128

BLAST of Lag0015563 vs. NCBI nr
Match: PON85987.1 (hypothetical protein TorRG33x02_181920, partial [Trema orientale])

HSP 1 Score: 62.0 bits (149), Expect = 5.2e-06
Identity = 30/63 (47.62%), Postives = 37/63 (58.73%), Query Frame = 0

Query: 47  FLRVGIANHGWIQFCAKPDPLNSNIVHEFYANIDDQEGFQVMVRGVAVDWSLGAINSLFN 106
           F+   I  H W QFCA P+     +V EFYAN+ D E   V VRGV V W+  AIN++F 
Sbjct: 85  FIAQVINQHNWRQFCAHPEDPIVPLVREFYANLTDPEEDTVYVRGVQVPWTEEAINTVFG 144

Query: 107 LQD 110
           L D
Sbjct: 145 LGD 147

BLAST of Lag0015563 vs. NCBI nr
Match: PON42276.1 (hypothetical protein PanWU01x14_283280 [Parasponia andersonii])

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-05
Identity = 35/94 (37.23%), Postives = 51/94 (54.26%), Query Frame = 0

Query: 47  FLRVGIANHGWIQFCAKPDPLNSNIVHEFYANIDDQEGFQVMVRGVAVDWSLGAINSLFN 106
           F+   I  H W  FCA P+ L + +V EFYAN+ + +   V VRGV V  S  AIN+++ 
Sbjct: 53  FIEDVITQHNWQLFCAHPEDLIAPLVREFYANMTNPDDDTVYVRGVQVPLSAEAINTIYG 112

Query: 107 LQDFL--HAGFNEMVVAPSNDQLNAVSGRLALKG 139
           L D +  H+ F E +  P   +L  V   +A+ G
Sbjct: 113 LGDPVDEHSEFVEAITEP---ELATVLETVAIAG 143

BLAST of Lag0015563 vs. NCBI nr
Match: PON90635.1 (hypothetical protein TorRG33x02_134920 [Trema orientale])

HSP 1 Score: 58.2 bits (139), Expect = 7.5e-05
Identity = 33/75 (44.00%), Postives = 41/75 (54.67%), Query Frame = 0

Query: 47  FLRVGIANHGWIQFCAKPDPLNSNIVHEFYANIDDQEGFQVMVRGVAVDWSLGAINSLFN 106
           F+   I  H W  FCA  +     +V EFYAN+ D E   V V+GV V WS  AIN+LF 
Sbjct: 53  FIADVIIQHNWQLFCAHHEDPIVPLVREFYANLTDPEEDTVYVKGVQVPWSEEAINTLFG 112

Query: 107 LQDFL--HAGFNEMV 120
           L D +  H+ F E V
Sbjct: 113 LGDPVDEHSAFVEDV 127

BLAST of Lag0015563 vs. NCBI nr
Match: EXB53755.1 (hypothetical protein L484_022412 [Morus notabilis])

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-04
Identity = 31/92 (33.70%), Postives = 49/92 (53.26%), Query Frame = 0

Query: 47  FLRVGIANHGWIQFCAKPDPLNSNIVHEFYANIDDQEGFQVMVRGVAVDWSLGAINSLFN 106
           F+   I  HGW QFC  P      +V EFYAN+ D     V V+ V V ++  AINS+F 
Sbjct: 6   FITRVIHQHGWRQFCQHPSNPIVPLVREFYANLLDFNQETVFVQNVKVPFTARAINSIFG 65

Query: 107 LQDFLHAGFNEMVVAPSNDQLNAVSGRLALKG 139
           L++ +   + +     +++QL  V   +A++G
Sbjct: 66  LEEVVDE-YVDFASEVTDEQLEVVLAEVAIEG 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RYE21173.13.1e-0640.24hypothetical protein EOP45_09925 [Sphingobacteriaceae bacterium][more]
PON85987.15.2e-0647.62hypothetical protein TorRG33x02_181920, partial [Trema orientale][more]
PON42276.11.2e-0537.23hypothetical protein PanWU01x14_283280 [Parasponia andersonii][more]
PON90635.17.5e-0544.00hypothetical protein TorRG33x02_134920 [Trema orientale][more]
EXB53755.11.3e-0433.70hypothetical protein L484_022412 [Morus notabilis][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015563.1Lag0015563.1mRNA