Lag0015538 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015538
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptiondual-specificity RNA methyltransferase RlmN
Locationchr12: 15537183 .. 15537523 (+)
RNA-Seq ExpressionLag0015538
SyntenyLag0015538
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGAGCAATGGCTCAACTGCTGCCACTCCCAACAAGAAGAAGCGAGTGGCGGAGCAATGGCAGCGTTTCGATCTGCATTCGATGTCGGAGAGACGAGAACTGAGTTCAAGAAGGCTGGCATCAAATCCACCTTCATCCCCTTCGCAACCACTTTGTTCTTGCCCTAGCCATCGATTCTGGTTTACAAATCCACCCTTGAAAGCCGCATGTAGTCTTCGTCTTCGTGCTCGTGTTTCTCAGGTGGGATCATGATCTCCAAGGCTCTTCTCTAAACCAAATCGGCCATTCCCACTGCCACCATCGCTGTCGTGGGACTTCTCTTCAGGTGGGATCATGA

mRNA sequence

ATGGCGGAGCAATGGCTCAACTGCTGCCACTCCCAACAAGAAGAAGCGAGTGGCGGAGCAATGGCAGCGTTTCGATCTGCATTCGATGTCGGAGAGACGAGAACTGAGTTCAAGAAGGCTGGCATCAAATCCACCTTCATCCCCTTCGCAACCACTTTGTGGGATCATGATCTCCAAGGCTCTTCTCTAAACCAAATCGGCCATTCCCACTGCCACCATCGCTGTCGTGGGACTTCTCTTCAGGTGGGATCATGA

Coding sequence (CDS)

ATGGCGGAGCAATGGCTCAACTGCTGCCACTCCCAACAAGAAGAAGCGAGTGGCGGAGCAATGGCAGCGTTTCGATCTGCATTCGATGTCGGAGAGACGAGAACTGAGTTCAAGAAGGCTGGCATCAAATCCACCTTCATCCCCTTCGCAACCACTTTGTGGGATCATGATCTCCAAGGCTCTTCTCTAAACCAAATCGGCCATTCCCACTGCCACCATCGCTGTCGTGGGACTTCTCTTCAGGTGGGATCATGA

Protein sequence

MAEQWLNCCHSQQEEASGGAMAAFRSAFDVGETRTEFKKAGIKSTFIPFATTLWDHDLQGSSLNQIGHSHCHHRCRGTSLQVGS
Homology
[Close]
BLAST of Lag0015538 vs. NCBI nr
Match: XP_022972434.1 (uncharacterized protein LOC111470995 [Cucurbita maxima])

HSP 1 Score: 57.4 bits (137), Expect = 7.0e-05
Identity = 31/45 (68.89%), Postives = 33/45 (73.33%), Query Frame = 0 

Query: 21 MAAFRSAFDVGETRTEFKKAGIKSTFIPFATTLWDHDLQGSSLNQ 66
          MAAFRSAFD GE RTEF+KAGIKSTFIPF      HD   + LNQ
Sbjct: 1  MAAFRSAFDAGEMRTEFEKAGIKSTFIPFIWKQLLHD-SNNLLNQ 44

[Close]
BLAST of Lag0015538 vs. NCBI nr
Match: XP_023553823.1 (uncharacterized protein LOC111811282 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 57.4 bits (137), Expect = 7.0e-05
Identity = 31/45 (68.89%), Postives = 33/45 (73.33%), Query Frame = 0 

Query: 21 MAAFRSAFDVGETRTEFKKAGIKSTFIPFATTLWDHDLQGSSLNQ 66
          MAAFRSAFD GE RTEF+KAGIKSTFIPF      HD   + LNQ
Sbjct: 1  MAAFRSAFDAGEMRTEFEKAGIKSTFIPFIWKQLLHD-SNNLLNQ 44

[Close]
BLAST of Lag0015538 vs. NCBI nr
Match: KAG7011606.1 (rlmN1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 57.4 bits (137), Expect = 7.0e-05
Identity = 31/45 (68.89%), Postives = 33/45 (73.33%), Query Frame = 0 

Query: 21 MAAFRSAFDVGETRTEFKKAGIKSTFIPFATTLWDHDLQGSSLNQ 66
          MAAFRSAFD GE RTEF+KAGIKSTFIPF      HD   + LNQ
Sbjct: 1  MAAFRSAFDAGEMRTEFEKAGIKSTFIPFIWKQLLHD-SNNLLNQ 44

[Close]
BLAST of Lag0015538 vs. NCBI nr
Match: KAG6571920.1 (hypothetical protein SDJN03_28648, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.4 bits (137), Expect = 7.0e-05
Identity = 31/45 (68.89%), Postives = 33/45 (73.33%), Query Frame = 0 

Query: 21 MAAFRSAFDVGETRTEFKKAGIKSTFIPFATTLWDHDLQGSSLNQ 66
          MAAFRSAFD GE RTEF+KAGIKSTFIPF      HD   + LNQ
Sbjct: 1  MAAFRSAFDAGEMRTEFEKAGIKSTFIPFIWKQLLHD-SNNLLNQ 44

[Close]
BLAST of Lag0015538 vs. NCBI nr
Match: XP_038888929.1 (dual-specificity RNA methyltransferase RlmN [Benincasa hispida])

HSP 1 Score: 56.2 bits (134), Expect = 1.6e-04
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 0 

Query: 21 MAAFRSAFDVGETRTEFKKAGIKSTFIPFATTLWDH 57
          MAAFRSAFD GE RTEF+KAG+K+TFIPF   +W H
Sbjct: 1  MAAFRSAFDAGEMRTEFEKAGVKTTFIPF---IWKH 33

The following BLAST results are available for this feature:
BLAST of Lag0015538 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022972434.17.0e-0568.89uncharacterized protein LOC111470995 [Cucurbita maxima][more]
XP_023553823.17.0e-0568.89uncharacterized protein LOC111811282 [Cucurbita pepo subsp. pepo][more]
KAG7011606.17.0e-0568.89rlmN1 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6571920.17.0e-0568.89hypothetical protein SDJN03_28648, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_038888929.11.6e-0472.22dual-specificity RNA methyltransferase RlmN [Benincasa hispida][more]
BLAST of Lag0015538 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015538.1Lag0015538.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001510 RNA methylation
biological_process GO:0006364 rRNA processing
cellular_component GO:0005737 cytoplasm
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0008173 RNA methyltransferase activity