Lag0015530 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015530
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionLOW QUALITY PROTEIN: uncharacterized protein LOC110412945
Locationchr12: 15315598 .. 15315969 (+)
RNA-Seq ExpressionLag0015530
SyntenyLag0015530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGATGGGCATGACCATGGCCAACCAAGCTAACATAGCCCCCGCTAATGCTATCTCTTCTCCCTACTGTGATATTTGTAATGACGAGCATATTACTGATAACTGTCCACTAAATCCTGCATCTGTTTTTTATGTAGGTCAACAAGGGAACCAGAACCAGAACCGATGGAATCCATACTCGGCTACATACAACCCAGGTTGGAGACAACATCCAAACTTCTCTTGGAGAGTTCAAGCCAGCACGAGTAATTCCAATACAAATCAATTTGGGAAATCTCCAACAGGATTCAATTCCCAACCTACACTGCAACAACCACAGAAGAACTTCCAACCAGTCCAGAATCAAGAGTCAAATCTAGAGGCTTTATGA

mRNA sequence

ATGATGATGGGCATGACCATGGCCAACCAAGCTAACATAGCCCCCGCTAATGCTATCTCTTCTCCCTACTGTGATATTTGTAATGACGAGCATATTACTGATAACTGTCCACTAAATCCTGCATCTGTTTTTTATGTAGGTCAACAAGGGAACCAGAACCAGAACCGATGGAATCCATACTCGGCTACATACAACCCAGGTTGGAGACAACATCCAAACTTCTCTTGGAGAGTTCAAGCCAGCACGAGTAATTCCAATACAAATCAATTTGGGAAATCTCCAACAGGATTCAATTCCCAACCTACACTGCAACAACCACAGAAGAACTTCCAACCAGTCCAGAATCAAGAGTCAAATCTAGAGGCTTTATGA

Coding sequence (CDS)

ATGATGATGGGCATGACCATGGCCAACCAAGCTAACATAGCCCCCGCTAATGCTATCTCTTCTCCCTACTGTGATATTTGTAATGACGAGCATATTACTGATAACTGTCCACTAAATCCTGCATCTGTTTTTTATGTAGGTCAACAAGGGAACCAGAACCAGAACCGATGGAATCCATACTCGGCTACATACAACCCAGGTTGGAGACAACATCCAAACTTCTCTTGGAGAGTTCAAGCCAGCACGAGTAATTCCAATACAAATCAATTTGGGAAATCTCCAACAGGATTCAATTCCCAACCTACACTGCAACAACCACAGAAGAACTTCCAACCAGTCCAGAATCAAGAGTCAAATCTAGAGGCTTTATGA

Protein sequence

MMMGMTMANQANIAPANAISSPYCDICNDEHITDNCPLNPASVFYVGQQGNQNQNRWNPYSATYNPGWRQHPNFSWRVQASTSNSNTNQFGKSPTGFNSQPTLQQPQKNFQPVQNQESNLEAL
Homology
BLAST of Lag0015530 vs. NCBI nr
Match: XP_022157400.1 (uncharacterized protein LOC111024107 [Momordica charantia])

HSP 1 Score: 99.8 bits (247), Expect = 1.8e-17
Identity = 56/122 (45.90%), Postives = 75/122 (61.48%), Query Frame = 0

Query: 12  NIAPANAISSPYCDICNDEHITDNCPLNPASVFYVGQQGNQNQNRWNPYSATYNPGWRQH 71
           N +P   I+   C  C D+H ++NCP NP+S++YVGQ    NQ ++NPYS TY+PGW+QH
Sbjct: 281 NPSPVYQIAESTCYYCGDQHPSENCPSNPSSMYYVGQ---MNQQKFNPYSNTYDPGWKQH 340

Query: 72  PNFSWRVQASTSNSNTNQFGK---SPTGFNSQPTL------QQPQKNF-QPVQNQESNLE 124
           PNFSW  Q S+S++  NQ  K   +P GF + P           QKN+ QPVQ   SN+E
Sbjct: 341 PNFSWSGQGSSSDTGQNQQYKQAYTPPGFPNSPAFPPTPHQYNQQKNYVQPVQQNLSNME 399

BLAST of Lag0015530 vs. NCBI nr
Match: XP_022159235.1 (uncharacterized protein LOC111025653 [Momordica charantia])

HSP 1 Score: 96.3 bits (238), Expect = 2.0e-16
Identity = 55/122 (45.08%), Postives = 72/122 (59.02%), Query Frame = 0

Query: 12  NIAPANAISSPYCDICNDEHITDNCPLNPASVFYVGQQGNQNQNRWNPYSATYNPGWRQH 71
           N +P   I+   C  C D H ++NCP NP+S++YVGQ    NQ ++NPYS TYNPGW+QH
Sbjct: 281 NPSPVYQIAESTCYYCGDLHPSENCPSNPSSMYYVGQ---MNQQKFNPYSNTYNPGWKQH 340

Query: 72  PNFSWRVQASTSNSNTNQFGK---SPTGFNSQPTL------QQPQKNF-QPVQNQESNLE 124
           PNFSW  Q S++ +  NQ  K   +P GF + P           QKN+ QP Q   SN+E
Sbjct: 341 PNFSWSGQGSSNTTGHNQQYKEAYTPPGFPNSPAFPPTPHQYNQQKNYVQPAQQNLSNME 399

BLAST of Lag0015530 vs. NCBI nr
Match: XP_022159345.1 (uncharacterized protein LOC111025764 [Momordica charantia])

HSP 1 Score: 92.8 bits (229), Expect = 2.2e-15
Identity = 53/116 (45.69%), Postives = 65/116 (56.03%), Query Frame = 0

Query: 14  APANAISSPYCDICNDEHITDNCPLNPASVFYVGQQGNQNQNRWNPYSATYNPGWRQHPN 73
           AP   ++   C  C++ HI D CP NPASVFYVG   N+N   +NPYS TYNPGWR HPN
Sbjct: 96  APVCQVNDLICSFCSENHIYDXCPHNPASVFYVGHGNNRN---FNPYSNTYNPGWRHHPN 155

Query: 74  FSWRVQASTS--NSNTNQFGKSPTGFNSQPTLQQPQKNFQ------PVQNQESNLE 122
           FSW  Q  +   N   +Q  K P    +Q  +  PQ+ +       PVQN  SNLE
Sbjct: 156 FSWXGQGGSXGFNQGQSQQNKQPYVPPTQQYIPPPQQRYNQRTQTPPVQNNNSNLE 208

BLAST of Lag0015530 vs. NCBI nr
Match: XP_030509259.1 (uncharacterized protein LOC115723937 [Cannabis sativa])

HSP 1 Score: 89.0 bits (219), Expect = 3.2e-14
Identity = 56/125 (44.80%), Postives = 70/125 (56.00%), Query Frame = 0

Query: 1   MMMGMTMANQANIAPANAISSPYCDICNDEHITDNCPLNPASVFYVGQQGNQNQNRWNPY 60
           ++  M M      A A   +   C  C D H  +NCP NPASV YVG Q N N+N  NPY
Sbjct: 274 ILKNMNMGGSVQPAAAIQRAEISCVYCGDGHTFENCPSNPASVCYVGNQ-NFNRNN-NPY 333

Query: 61  SATYNPGWRQHPNFSWRVQASTSNSNTNQFGKS--PTGFNSQPTLQQPQKNFQPVQNQES 120
           S +YNP W+ HPNFSW  Q ++S+      GK   P GF+ QP  QQP    QP  +Q S
Sbjct: 334 SNSYNPAWKHHPNFSWGGQGASSSGAQQAQGKQSFPPGFSQQPRPQQPH---QPQGSQTS 393

Query: 121 NLEAL 124
           +LE+L
Sbjct: 394 SLESL 393

BLAST of Lag0015530 vs. NCBI nr
Match: XP_030498047.1 (uncharacterized protein LOC115713707 [Cannabis sativa])

HSP 1 Score: 89.0 bits (219), Expect = 3.2e-14
Identity = 55/124 (44.35%), Postives = 73/124 (58.87%), Query Frame = 0

Query: 1   MMMGMTMANQANIAPANAISSPYCDICNDEHITDNCPLNPASVFYVGQQGNQNQNRWNPY 60
           ++  M M      A A   +   C  C D H  +NCP NPASV YVG Q N N+N  NPY
Sbjct: 114 ILKNMNMGGSVQPAAAIQRAEISCVYCGDGHTFENCPSNPASVCYVGNQ-NFNRNN-NPY 173

Query: 61  SATYNPGWRQHPNFSWRVQASTSNSNTNQFGKS-PTGFNSQPTLQQPQKNFQPVQNQESN 120
           S +YNP W+ HPNFSW  Q ++S+    Q  +S P GF+ QP   +PQ++ QP  +Q S+
Sbjct: 174 SNSYNPAWKHHPNFSWGGQGASSSGAQGQGKQSFPPGFSQQP---RPQQSHQPQGSQTSS 232

Query: 121 LEAL 124
           LE+L
Sbjct: 234 LESL 232

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022157400.11.8e-1745.90uncharacterized protein LOC111024107 [Momordica charantia][more]
XP_022159235.12.0e-1645.08uncharacterized protein LOC111025653 [Momordica charantia][more]
XP_022159345.12.2e-1545.69uncharacterized protein LOC111025764 [Momordica charantia][more]
XP_030509259.13.2e-1444.80uncharacterized protein LOC115723937 [Cannabis sativa][more]
XP_030498047.13.2e-1444.35uncharacterized protein LOC115713707 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..123

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015530.1Lag0015530.1mRNA