Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGCTAGATTTGATCTTGAAAAGTATGACGGTAGAGGCGATTTTGGTTTATGGAAGACAAAAATATCAGCATTTCTGGTACAACAAAAAGTTGCTAAGGCTTTGCTTGATCCTAGTAAACTCCCTGTGACTTTGTTTGAATCCGATAGGGAAGAAATGAATGACATTGCCTTTAGTTCTATCATTCTTCATCTAGGTGATAGTGTTTTAAGGAAAGTTAGTAAGATAACCAACGTTAGAGAATTATGGTCTAAGCTGGAAGAATTGTATATGCCCAAGACCCTTACTAACATCCTTTATCTGAAAGAACGATTTTTTGGATTCAAAATGGATCCATCTAAAAATCTTGAGGAAAACATAGAAGACTTTAATGTCATTTGTACTGACTTGCAGAATTCTGGTGAAGAAGTCAAAGATAAGGATCAAGCAGTAATTCTTCTAAATTCACTACCAAAAAACTTCAAAGAAGTGATGGTAGCAATGAAGTATGGTAGAGATGATATCACTCTTGAAAAAGTACTGAATTCTGTAAGGCTTAGGGACTTGGAAATGAAACAAGAGAAGAAAGAACCCAAAGCCTTATTTGTTAAAGGAAATAAAAAACAACAACATAGAGGGAAAAACCACCCGTTTAGAGGCCAAAACTCTCAGTCCAAAGGACATGGCAACTCGCAGAGGGATAACAGACAGAATTCTAGACCTCAGAATAATGGAAGAGAAAGTGATAAGAGTGACATTAAGTGTAACTACTGTCACAAAACCGGGCACATTAAATGGGACTGTCCACAACTGAAATGA
mRNA sequence
ATGTCTGCTAGATTTGATCTTGAAAAGTATGACGGTAGAGGCGATTTTGGTTTATGGAAGACAAAAATATCAGCATTTCTGGTACAACAAAAAGTTGCTAAGGCTTTGCTTGATCCTAGTAAACTCCCTGTGACTTTGTTTGAATCCGATAGGGAAGAAATGAATGACATTGCCTTTAGTTCTATCATTCTTCATCTAGGTGATAGTGTTTTAAGGAAAGTTAGTAAGATAACCAACGTTAGAGAATTATGGTCTAAGCTGGAAGAATTGTATATGCCCAAGACCCTTACTAACATCCTTTATCTGAAAGAACGATTTTTTGGATTCAAAATGGATCCATCTAAAAATCTTGAGGAAAACATAGAAGACTTTAATGTCATTTGTACTGACTTGCAGAATTCTGGTGAAGAAGTCAAAGATAAGGATCAAGCAGTAATTCTTCTAAATTCACTACCAAAAAACTTCAAAGAAGTGATGGTAGCAATGAAGTATGGTAGAGATGATATCACTCTTGAAAAAGTACTGAATTCTGTAAGGCTTAGGGACTTGGAAATGAAACAAGAGAAGAAAGAACCCAAAGCCTTATTTGTTAAAGGAAATAAAAAACAACAACATAGAGGGAAAAACCACCCGTTTAGAGGCCAAAACTCTCAGTCCAAAGGACATGGCAACTCGCAGAGGGATAACAGACAGAATTCTAGACCTCAGAATAATGGAAGAGAAAGTGATAAGAGTGACATTAAGTGTAACTACTGTCACAAAACCGGGCACATTAAATGGGACTGTCCACAACTGAAATGA
Coding sequence (CDS)
ATGTCTGCTAGATTTGATCTTGAAAAGTATGACGGTAGAGGCGATTTTGGTTTATGGAAGACAAAAATATCAGCATTTCTGGTACAACAAAAAGTTGCTAAGGCTTTGCTTGATCCTAGTAAACTCCCTGTGACTTTGTTTGAATCCGATAGGGAAGAAATGAATGACATTGCCTTTAGTTCTATCATTCTTCATCTAGGTGATAGTGTTTTAAGGAAAGTTAGTAAGATAACCAACGTTAGAGAATTATGGTCTAAGCTGGAAGAATTGTATATGCCCAAGACCCTTACTAACATCCTTTATCTGAAAGAACGATTTTTTGGATTCAAAATGGATCCATCTAAAAATCTTGAGGAAAACATAGAAGACTTTAATGTCATTTGTACTGACTTGCAGAATTCTGGTGAAGAAGTCAAAGATAAGGATCAAGCAGTAATTCTTCTAAATTCACTACCAAAAAACTTCAAAGAAGTGATGGTAGCAATGAAGTATGGTAGAGATGATATCACTCTTGAAAAAGTACTGAATTCTGTAAGGCTTAGGGACTTGGAAATGAAACAAGAGAAGAAAGAACCCAAAGCCTTATTTGTTAAAGGAAATAAAAAACAACAACATAGAGGGAAAAACCACCCGTTTAGAGGCCAAAACTCTCAGTCCAAAGGACATGGCAACTCGCAGAGGGATAACAGACAGAATTCTAGACCTCAGAATAATGGAAGAGAAAGTGATAAGAGTGACATTAAGTGTAACTACTGTCACAAAACCGGGCACATTAAATGGGACTGTCCACAACTGAAATGA
Protein sequence
MSARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSSIILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILYLKERFFGFKMDPSKNLEENIEDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLRDLEMKQEKKEPKALFVKGNKKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGRESDKSDIKCNYCHKTGHIKWDCPQLK
Homology
BLAST of Lag0015516 vs. NCBI nr
Match:
TYK25306.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 224.9 bits (572), Expect = 8.0e-55
Identity = 120/263 (45.63%), Postives = 176/263 (66.92%), Query Frame = 0
Query: 2 SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSS 61
S RF++ K++G GDF LW+ KI A LVQ KVAK +LD +LP + ES++ +M+++A+S+
Sbjct: 3 STRFEVSKFNGHGDFALWRKKIRAILVQHKVAK-ILDEERLPDNITESEKRDMDEMAYST 62
Query: 62 IILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILYLKERFFGFKMDPSKNLEENI 121
I+L+L D VLR V + T ELW KLE LY+ K+L N +Y+KE+FFG+KMD SK+LEEN+
Sbjct: 63 ILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKSLEENL 122
Query: 122 EDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLR 181
++F I DL N GE++ D++QAVILLNSLP+ ++EV A+KYGRD +T+ VL++++ R
Sbjct: 123 DEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTR 182
Query: 182 DLEMKQEKKEPKALFVKG-NKKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGR 241
+LE+K+E+K+ + L +G ++K+ +GK FR SK G S+
Sbjct: 183 NLEIKKERKDGELLMARGRSEKKSWKGKERSFR-----SKSKGKSR-------------- 238
Query: 242 ESDKSDIKCNYCHKTGHIKWDCP 264
KC CHK GH K +CP
Sbjct: 243 -------KCFLCHKEGHFKKNCP 238
BLAST of Lag0015516 vs. NCBI nr
Match:
KAA0050719.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 224.9 bits (572), Expect = 8.0e-55
Identity = 120/263 (45.63%), Postives = 176/263 (66.92%), Query Frame = 0
Query: 2 SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSS 61
S RF++ K++G GDF LW+ KI A LVQ KVAK +LD +LP + ES++ +M+++A+S+
Sbjct: 3 STRFEVSKFNGHGDFSLWRKKIRAILVQHKVAK-ILDEERLPDNITESEKRDMDEMAYST 62
Query: 62 IILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILYLKERFFGFKMDPSKNLEENI 121
I+L+L D VLR V + T ELW KLE LY+ K+L N +Y+KE+FFG+KMD SK+LEEN+
Sbjct: 63 ILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLLNKIYIKEKFFGYKMDQSKSLEENL 122
Query: 122 EDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLR 181
++F I DL N GE++ D++QAVILLNSLP+ ++EV A+KYGRD +T+ VL++++ R
Sbjct: 123 DEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTR 182
Query: 182 DLEMKQEKKEPKALFVKG-NKKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGR 241
+LE+K+E+K+ + L +G ++K+ +GK FR SK G S+
Sbjct: 183 NLEIKKERKDGELLMARGRSEKKSWKGKERSFR-----SKSKGKSR-------------- 238
Query: 242 ESDKSDIKCNYCHKTGHIKWDCP 264
KC CHK GH K +CP
Sbjct: 243 -------KCFLCHKEGHFKKNCP 238
BLAST of Lag0015516 vs. NCBI nr
Match:
KAA0047995.1 (retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa])
HSP 1 Score: 217.6 bits (553), Expect = 1.3e-52
Identity = 118/263 (44.87%), Postives = 173/263 (65.78%), Query Frame = 0
Query: 2 SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSS 61
S RF++ K++G GDF LW+ KI A LVQ KVAK +LD +LP + ES++ +M+++A+ +
Sbjct: 3 STRFEVSKFNGHGDFALWRKKIRAILVQHKVAK-ILDEERLPDNITESEKRDMDEMAYWT 62
Query: 62 IILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILYLKERFFGFKMDPSKNLEENI 121
I+L+L D VLR V + T ELW KLE LY+ K+L N +Y+KE+FFG+KMD SK LEEN+
Sbjct: 63 ILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKILEENL 122
Query: 122 EDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLR 181
++F I DL N GE++ D++QAVILLNSLP+ ++EV A+KYG D +T+ VL++++ R
Sbjct: 123 DEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGWDSLTMSIVLDALKTR 182
Query: 182 DLEMKQEKKEPKALFVKG-NKKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGR 241
+LE+K+E+K+ + L +G ++K+ +GK FR SK G S+
Sbjct: 183 NLEIKKERKDGELLMARGRSEKKSWKGKERSFR-----SKSKGKSR-------------- 238
Query: 242 ESDKSDIKCNYCHKTGHIKWDCP 264
KC CHK GH K +CP
Sbjct: 243 -------KCFLCHKEGHFKKNCP 238
BLAST of Lag0015516 vs. NCBI nr
Match:
KAA0050070.1 (putative polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 215.3 bits (547), Expect = 6.3e-52
Identity = 113/262 (43.13%), Postives = 172/262 (65.65%), Query Frame = 0
Query: 2 SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSS 61
S RF++ K++G GDF LW+ KI A LVQ KVAK +LD +LP + ES++ +M+++ +S+
Sbjct: 3 STRFEVSKFNGNGDFALWRKKIRAILVQHKVAK-ILDEERLPENITESEKRDMDEMTYST 62
Query: 62 IILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILYLKERFFGFKMDPSKNLEENI 121
I+L+L D VLR V + T + ELW KLE LYM K+L+N +Y+KE+FFG+KMD SK LEEN+
Sbjct: 63 ILLYLSDEVLRLVDEATTIGELWKKLESLYMKKSLSNKIYIKEKFFGYKMDQSKGLEENL 122
Query: 122 EDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLR 181
++F I DL N GE++ D++QAVILLNSLP+ ++EV A+KYGRD + + +L++++ R
Sbjct: 123 DEFQKIIVDLNNIGEKMSDENQAVILLNSLPEIYREVKAAIKYGRDSLNMSIMLDALKTR 182
Query: 182 DLEMKQEKKEPKALFVKGNKKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGRE 241
+LE+K+E+K+ + L + + S+ K +R +R S+ ++
Sbjct: 183 NLEIKKERKDGELLMAR----------------RRSEKKSWKGKERSSRSKSKEKSR--- 238
Query: 242 SDKSDIKCNYCHKTGHIKWDCP 264
KC CHK GH K +CP
Sbjct: 243 ------KCFLCHKEGHFKKNCP 238
BLAST of Lag0015516 vs. NCBI nr
Match:
TYK10340.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 211.5 bits (537), Expect = 9.1e-51
Identity = 113/263 (42.97%), Postives = 176/263 (66.92%), Query Frame = 0
Query: 2 SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSS 61
S R ++ K++G GDF LW+ KI A L+Q KVAK +LD +LP + ES++ +M+++ +S+
Sbjct: 3 STRSEVSKFNGNGDFALWRKKIRAILIQHKVAK-ILDEERLPENITESEKRDMDEMTYST 62
Query: 62 IILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILYLKERFFGFKMDPSKNLEENI 121
I+L+L D VLR V + T + ELW KLE LY+ K+L+N +Y+KE+FFG+KMD SK+LEEN+
Sbjct: 63 ILLYLSDEVLRLVDEATTIGELWKKLESLYLKKSLSNKIYIKEKFFGYKMDQSKSLEENL 122
Query: 122 EDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLR 181
++F I DL N GE++ D++QAVILLNSLP+ ++EV A+KYGRD + + +L++++ R
Sbjct: 123 DEFQKIIVDLNNIGEKMSDENQAVILLNSLPEIYREVKAAIKYGRDSLNMSIMLDALKTR 182
Query: 182 DLEMKQEKKEPKALFV-KGNKKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGR 241
+LE+K+E K+ + L + ++K+ +GK ++S+SK G S+
Sbjct: 183 NLEIKKECKDGELLMARRRSEKKSWKGKE-----RSSRSKSKGKSR-------------- 238
Query: 242 ESDKSDIKCNYCHKTGHIKWDCP 264
KC CHK GH+K +CP
Sbjct: 243 -------KCFLCHKEGHLKKNCP 238
BLAST of Lag0015516 vs. ExPASy Swiss-Prot
Match:
P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)
HSP 1 Score: 132.9 bits (333), Expect = 5.4e-30
Identity = 80/260 (30.77%), Postives = 141/260 (54.23%), Query Frame = 0
Query: 4 RFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSSII 63
++++ K++G F W+ ++ L+QQ + K L SK P T+ D ++++ A S+I
Sbjct: 5 KYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAIR 64
Query: 64 LHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILYLKERFFGFKMDPSKNLEENIED 123
LHL D V+ + R +W++LE LYM KTLTN LYLK++ + M N ++
Sbjct: 65 LHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNV 124
Query: 124 FNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLRDL 183
FN + T L N G +++++D+A++LLNSLP ++ + + +G+ I L+ V +++ L +
Sbjct: 125 FNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKDVTSALLLNEK 184
Query: 184 EMKQEKKEPKALFVKGNKKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGRESD 243
K+ + + +AL +G RG+++ R N+ + + NR SR +N
Sbjct: 185 MRKKPENQGQALITEG------RGRSYQ-RSSNNYGRSGARGKSKNRSKSRVRN------ 244
Query: 244 KSDIKCNYCHKTGHIKWDCP 264
C C++ GH K DCP
Sbjct: 245 -----CYNCNQPGHFKRDCP 246
BLAST of Lag0015516 vs. ExPASy TrEMBL
Match:
A0A5D3DNU1 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004440 PE=4 SV=1)
HSP 1 Score: 224.9 bits (572), Expect = 3.9e-55
Identity = 120/263 (45.63%), Postives = 176/263 (66.92%), Query Frame = 0
Query: 2 SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSS 61
S RF++ K++G GDF LW+ KI A LVQ KVAK +LD +LP + ES++ +M+++A+S+
Sbjct: 3 STRFEVSKFNGHGDFALWRKKIRAILVQHKVAK-ILDEERLPDNITESEKRDMDEMAYST 62
Query: 62 IILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILYLKERFFGFKMDPSKNLEENI 121
I+L+L D VLR V + T ELW KLE LY+ K+L N +Y+KE+FFG+KMD SK+LEEN+
Sbjct: 63 ILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKSLEENL 122
Query: 122 EDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLR 181
++F I DL N GE++ D++QAVILLNSLP+ ++EV A+KYGRD +T+ VL++++ R
Sbjct: 123 DEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTR 182
Query: 182 DLEMKQEKKEPKALFVKG-NKKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGR 241
+LE+K+E+K+ + L +G ++K+ +GK FR SK G S+
Sbjct: 183 NLEIKKERKDGELLMARGRSEKKSWKGKERSFR-----SKSKGKSR-------------- 238
Query: 242 ESDKSDIKCNYCHKTGHIKWDCP 264
KC CHK GH K +CP
Sbjct: 243 -------KCFLCHKEGHFKKNCP 238
BLAST of Lag0015516 vs. ExPASy TrEMBL
Match:
A0A5A7UB25 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00190 PE=4 SV=1)
HSP 1 Score: 224.9 bits (572), Expect = 3.9e-55
Identity = 120/263 (45.63%), Postives = 176/263 (66.92%), Query Frame = 0
Query: 2 SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSS 61
S RF++ K++G GDF LW+ KI A LVQ KVAK +LD +LP + ES++ +M+++A+S+
Sbjct: 3 STRFEVSKFNGHGDFSLWRKKIRAILVQHKVAK-ILDEERLPDNITESEKRDMDEMAYST 62
Query: 62 IILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILYLKERFFGFKMDPSKNLEENI 121
I+L+L D VLR V + T ELW KLE LY+ K+L N +Y+KE+FFG+KMD SK+LEEN+
Sbjct: 63 ILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLLNKIYIKEKFFGYKMDQSKSLEENL 122
Query: 122 EDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLR 181
++F I DL N GE++ D++QAVILLNSLP+ ++EV A+KYGRD +T+ VL++++ R
Sbjct: 123 DEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTR 182
Query: 182 DLEMKQEKKEPKALFVKG-NKKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGR 241
+LE+K+E+K+ + L +G ++K+ +GK FR SK G S+
Sbjct: 183 NLEIKKERKDGELLMARGRSEKKSWKGKERSFR-----SKSKGKSR-------------- 238
Query: 242 ESDKSDIKCNYCHKTGHIKWDCP 264
KC CHK GH K +CP
Sbjct: 243 -------KCFLCHKEGHFKKNCP 238
BLAST of Lag0015516 vs. ExPASy TrEMBL
Match:
A0A5A7U2U7 (Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00590 PE=4 SV=1)
HSP 1 Score: 217.6 bits (553), Expect = 6.2e-53
Identity = 118/263 (44.87%), Postives = 173/263 (65.78%), Query Frame = 0
Query: 2 SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSS 61
S RF++ K++G GDF LW+ KI A LVQ KVAK +LD +LP + ES++ +M+++A+ +
Sbjct: 3 STRFEVSKFNGHGDFALWRKKIRAILVQHKVAK-ILDEERLPDNITESEKRDMDEMAYWT 62
Query: 62 IILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILYLKERFFGFKMDPSKNLEENI 121
I+L+L D VLR V + T ELW KLE LY+ K+L N +Y+KE+FFG+KMD SK LEEN+
Sbjct: 63 ILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKILEENL 122
Query: 122 EDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLR 181
++F I DL N GE++ D++QAVILLNSLP+ ++EV A+KYG D +T+ VL++++ R
Sbjct: 123 DEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGWDSLTMSIVLDALKTR 182
Query: 182 DLEMKQEKKEPKALFVKG-NKKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGR 241
+LE+K+E+K+ + L +G ++K+ +GK FR SK G S+
Sbjct: 183 NLEIKKERKDGELLMARGRSEKKSWKGKERSFR-----SKSKGKSR-------------- 238
Query: 242 ESDKSDIKCNYCHKTGHIKWDCP 264
KC CHK GH K +CP
Sbjct: 243 -------KCFLCHKEGHFKKNCP 238
BLAST of Lag0015516 vs. ExPASy TrEMBL
Match:
A0A5A7U459 (Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00520 PE=4 SV=1)
HSP 1 Score: 215.3 bits (547), Expect = 3.1e-52
Identity = 113/262 (43.13%), Postives = 172/262 (65.65%), Query Frame = 0
Query: 2 SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSS 61
S RF++ K++G GDF LW+ KI A LVQ KVAK +LD +LP + ES++ +M+++ +S+
Sbjct: 3 STRFEVSKFNGNGDFALWRKKIRAILVQHKVAK-ILDEERLPENITESEKRDMDEMTYST 62
Query: 62 IILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILYLKERFFGFKMDPSKNLEENI 121
I+L+L D VLR V + T + ELW KLE LYM K+L+N +Y+KE+FFG+KMD SK LEEN+
Sbjct: 63 ILLYLSDEVLRLVDEATTIGELWKKLESLYMKKSLSNKIYIKEKFFGYKMDQSKGLEENL 122
Query: 122 EDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLR 181
++F I DL N GE++ D++QAVILLNSLP+ ++EV A+KYGRD + + +L++++ R
Sbjct: 123 DEFQKIIVDLNNIGEKMSDENQAVILLNSLPEIYREVKAAIKYGRDSLNMSIMLDALKTR 182
Query: 182 DLEMKQEKKEPKALFVKGNKKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGRE 241
+LE+K+E+K+ + L + + S+ K +R +R S+ ++
Sbjct: 183 NLEIKKERKDGELLMAR----------------RRSEKKSWKGKERSSRSKSKEKSR--- 238
Query: 242 SDKSDIKCNYCHKTGHIKWDCP 264
KC CHK GH K +CP
Sbjct: 243 ------KCFLCHKEGHFKKNCP 238
BLAST of Lag0015516 vs. ExPASy TrEMBL
Match:
A0A5D3CG50 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00150 PE=4 SV=1)
HSP 1 Score: 211.5 bits (537), Expect = 4.4e-51
Identity = 113/263 (42.97%), Postives = 176/263 (66.92%), Query Frame = 0
Query: 2 SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSS 61
S R ++ K++G GDF LW+ KI A L+Q KVAK +LD +LP + ES++ +M+++ +S+
Sbjct: 3 STRSEVSKFNGNGDFALWRKKIRAILIQHKVAK-ILDEERLPENITESEKRDMDEMTYST 62
Query: 62 IILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILYLKERFFGFKMDPSKNLEENI 121
I+L+L D VLR V + T + ELW KLE LY+ K+L+N +Y+KE+FFG+KMD SK+LEEN+
Sbjct: 63 ILLYLSDEVLRLVDEATTIGELWKKLESLYLKKSLSNKIYIKEKFFGYKMDQSKSLEENL 122
Query: 122 EDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLR 181
++F I DL N GE++ D++QAVILLNSLP+ ++EV A+KYGRD + + +L++++ R
Sbjct: 123 DEFQKIIVDLNNIGEKMSDENQAVILLNSLPEIYREVKAAIKYGRDSLNMSIMLDALKTR 182
Query: 182 DLEMKQEKKEPKALFV-KGNKKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGR 241
+LE+K+E K+ + L + ++K+ +GK ++S+SK G S+
Sbjct: 183 NLEIKKECKDGELLMARRRSEKKSWKGKE-----RSSRSKSKGKSR-------------- 238
Query: 242 ESDKSDIKCNYCHKTGHIKWDCP 264
KC CHK GH+K +CP
Sbjct: 243 -------KCFLCHKEGHLKKNCP 238
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
TYK25306.1 | 8.0e-55 | 45.63 | putative gag-pol polyprotein [Cucumis melo var. makuwa] | [more] |
KAA0050719.1 | 8.0e-55 | 45.63 | putative gag-pol polyprotein [Cucumis melo var. makuwa] | [more] |
KAA0047995.1 | 1.3e-52 | 44.87 | retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa... | [more] |
KAA0050070.1 | 6.3e-52 | 43.13 | putative polyprotein [Cucumis melo var. makuwa] | [more] |
TYK10340.1 | 9.1e-51 | 42.97 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
Match Name | E-value | Identity | Description | |
P10978 | 5.4e-30 | 30.77 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... | [more] |
Match Name | E-value | Identity | Description | |
A0A5D3DNU1 | 3.9e-55 | 45.63 | Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... | [more] |
A0A5A7UB25 | 3.9e-55 | 45.63 | Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca... | [more] |
A0A5A7U2U7 | 6.2e-53 | 44.87 | Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. maku... | [more] |
A0A5A7U459 | 3.1e-52 | 43.13 | Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675... | [more] |
A0A5D3CG50 | 4.4e-51 | 42.97 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
Match Name | E-value | Identity | Description | |