Lag0015516 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015516
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr12: 14994778 .. 14995578 (+)
RNA-Seq ExpressionLag0015516
SyntenyLag0015516
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGCTAGATTTGATCTTGAAAAGTATGACGGTAGAGGCGATTTTGGTTTATGGAAGACAAAAATATCAGCATTTCTGGTACAACAAAAAGTTGCTAAGGCTTTGCTTGATCCTAGTAAACTCCCTGTGACTTTGTTTGAATCCGATAGGGAAGAAATGAATGACATTGCCTTTAGTTCTATCATTCTTCATCTAGGTGATAGTGTTTTAAGGAAAGTTAGTAAGATAACCAACGTTAGAGAATTATGGTCTAAGCTGGAAGAATTGTATATGCCCAAGACCCTTACTAACATCCTTTATCTGAAAGAACGATTTTTTGGATTCAAAATGGATCCATCTAAAAATCTTGAGGAAAACATAGAAGACTTTAATGTCATTTGTACTGACTTGCAGAATTCTGGTGAAGAAGTCAAAGATAAGGATCAAGCAGTAATTCTTCTAAATTCACTACCAAAAAACTTCAAAGAAGTGATGGTAGCAATGAAGTATGGTAGAGATGATATCACTCTTGAAAAAGTACTGAATTCTGTAAGGCTTAGGGACTTGGAAATGAAACAAGAGAAGAAAGAACCCAAAGCCTTATTTGTTAAAGGAAATAAAAAACAACAACATAGAGGGAAAAACCACCCGTTTAGAGGCCAAAACTCTCAGTCCAAAGGACATGGCAACTCGCAGAGGGATAACAGACAGAATTCTAGACCTCAGAATAATGGAAGAGAAAGTGATAAGAGTGACATTAAGTGTAACTACTGTCACAAAACCGGGCACATTAAATGGGACTGTCCACAACTGAAATGA

mRNA sequence

ATGTCTGCTAGATTTGATCTTGAAAAGTATGACGGTAGAGGCGATTTTGGTTTATGGAAGACAAAAATATCAGCATTTCTGGTACAACAAAAAGTTGCTAAGGCTTTGCTTGATCCTAGTAAACTCCCTGTGACTTTGTTTGAATCCGATAGGGAAGAAATGAATGACATTGCCTTTAGTTCTATCATTCTTCATCTAGGTGATAGTGTTTTAAGGAAAGTTAGTAAGATAACCAACGTTAGAGAATTATGGTCTAAGCTGGAAGAATTGTATATGCCCAAGACCCTTACTAACATCCTTTATCTGAAAGAACGATTTTTTGGATTCAAAATGGATCCATCTAAAAATCTTGAGGAAAACATAGAAGACTTTAATGTCATTTGTACTGACTTGCAGAATTCTGGTGAAGAAGTCAAAGATAAGGATCAAGCAGTAATTCTTCTAAATTCACTACCAAAAAACTTCAAAGAAGTGATGGTAGCAATGAAGTATGGTAGAGATGATATCACTCTTGAAAAAGTACTGAATTCTGTAAGGCTTAGGGACTTGGAAATGAAACAAGAGAAGAAAGAACCCAAAGCCTTATTTGTTAAAGGAAATAAAAAACAACAACATAGAGGGAAAAACCACCCGTTTAGAGGCCAAAACTCTCAGTCCAAAGGACATGGCAACTCGCAGAGGGATAACAGACAGAATTCTAGACCTCAGAATAATGGAAGAGAAAGTGATAAGAGTGACATTAAGTGTAACTACTGTCACAAAACCGGGCACATTAAATGGGACTGTCCACAACTGAAATGA

Coding sequence (CDS)

ATGTCTGCTAGATTTGATCTTGAAAAGTATGACGGTAGAGGCGATTTTGGTTTATGGAAGACAAAAATATCAGCATTTCTGGTACAACAAAAAGTTGCTAAGGCTTTGCTTGATCCTAGTAAACTCCCTGTGACTTTGTTTGAATCCGATAGGGAAGAAATGAATGACATTGCCTTTAGTTCTATCATTCTTCATCTAGGTGATAGTGTTTTAAGGAAAGTTAGTAAGATAACCAACGTTAGAGAATTATGGTCTAAGCTGGAAGAATTGTATATGCCCAAGACCCTTACTAACATCCTTTATCTGAAAGAACGATTTTTTGGATTCAAAATGGATCCATCTAAAAATCTTGAGGAAAACATAGAAGACTTTAATGTCATTTGTACTGACTTGCAGAATTCTGGTGAAGAAGTCAAAGATAAGGATCAAGCAGTAATTCTTCTAAATTCACTACCAAAAAACTTCAAAGAAGTGATGGTAGCAATGAAGTATGGTAGAGATGATATCACTCTTGAAAAAGTACTGAATTCTGTAAGGCTTAGGGACTTGGAAATGAAACAAGAGAAGAAAGAACCCAAAGCCTTATTTGTTAAAGGAAATAAAAAACAACAACATAGAGGGAAAAACCACCCGTTTAGAGGCCAAAACTCTCAGTCCAAAGGACATGGCAACTCGCAGAGGGATAACAGACAGAATTCTAGACCTCAGAATAATGGAAGAGAAAGTGATAAGAGTGACATTAAGTGTAACTACTGTCACAAAACCGGGCACATTAAATGGGACTGTCCACAACTGAAATGA

Protein sequence

MSARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSSIILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILYLKERFFGFKMDPSKNLEENIEDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLRDLEMKQEKKEPKALFVKGNKKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGRESDKSDIKCNYCHKTGHIKWDCPQLK
Homology
BLAST of Lag0015516 vs. NCBI nr
Match: TYK25306.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 224.9 bits (572), Expect = 8.0e-55
Identity = 120/263 (45.63%), Postives = 176/263 (66.92%), Query Frame = 0

Query: 2   SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSS 61
           S RF++ K++G GDF LW+ KI A LVQ KVAK +LD  +LP  + ES++ +M+++A+S+
Sbjct: 3   STRFEVSKFNGHGDFALWRKKIRAILVQHKVAK-ILDEERLPDNITESEKRDMDEMAYST 62

Query: 62  IILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILYLKERFFGFKMDPSKNLEENI 121
           I+L+L D VLR V + T   ELW KLE LY+ K+L N +Y+KE+FFG+KMD SK+LEEN+
Sbjct: 63  ILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKSLEENL 122

Query: 122 EDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLR 181
           ++F  I  DL N GE++ D++QAVILLNSLP+ ++EV  A+KYGRD +T+  VL++++ R
Sbjct: 123 DEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTR 182

Query: 182 DLEMKQEKKEPKALFVKG-NKKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGR 241
           +LE+K+E+K+ + L  +G ++K+  +GK   FR     SK  G S+              
Sbjct: 183 NLEIKKERKDGELLMARGRSEKKSWKGKERSFR-----SKSKGKSR-------------- 238

Query: 242 ESDKSDIKCNYCHKTGHIKWDCP 264
                  KC  CHK GH K +CP
Sbjct: 243 -------KCFLCHKEGHFKKNCP 238

BLAST of Lag0015516 vs. NCBI nr
Match: KAA0050719.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 224.9 bits (572), Expect = 8.0e-55
Identity = 120/263 (45.63%), Postives = 176/263 (66.92%), Query Frame = 0

Query: 2   SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSS 61
           S RF++ K++G GDF LW+ KI A LVQ KVAK +LD  +LP  + ES++ +M+++A+S+
Sbjct: 3   STRFEVSKFNGHGDFSLWRKKIRAILVQHKVAK-ILDEERLPDNITESEKRDMDEMAYST 62

Query: 62  IILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILYLKERFFGFKMDPSKNLEENI 121
           I+L+L D VLR V + T   ELW KLE LY+ K+L N +Y+KE+FFG+KMD SK+LEEN+
Sbjct: 63  ILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLLNKIYIKEKFFGYKMDQSKSLEENL 122

Query: 122 EDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLR 181
           ++F  I  DL N GE++ D++QAVILLNSLP+ ++EV  A+KYGRD +T+  VL++++ R
Sbjct: 123 DEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTR 182

Query: 182 DLEMKQEKKEPKALFVKG-NKKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGR 241
           +LE+K+E+K+ + L  +G ++K+  +GK   FR     SK  G S+              
Sbjct: 183 NLEIKKERKDGELLMARGRSEKKSWKGKERSFR-----SKSKGKSR-------------- 238

Query: 242 ESDKSDIKCNYCHKTGHIKWDCP 264
                  KC  CHK GH K +CP
Sbjct: 243 -------KCFLCHKEGHFKKNCP 238

BLAST of Lag0015516 vs. NCBI nr
Match: KAA0047995.1 (retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 217.6 bits (553), Expect = 1.3e-52
Identity = 118/263 (44.87%), Postives = 173/263 (65.78%), Query Frame = 0

Query: 2   SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSS 61
           S RF++ K++G GDF LW+ KI A LVQ KVAK +LD  +LP  + ES++ +M+++A+ +
Sbjct: 3   STRFEVSKFNGHGDFALWRKKIRAILVQHKVAK-ILDEERLPDNITESEKRDMDEMAYWT 62

Query: 62  IILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILYLKERFFGFKMDPSKNLEENI 121
           I+L+L D VLR V + T   ELW KLE LY+ K+L N +Y+KE+FFG+KMD SK LEEN+
Sbjct: 63  ILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKILEENL 122

Query: 122 EDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLR 181
           ++F  I  DL N GE++ D++QAVILLNSLP+ ++EV  A+KYG D +T+  VL++++ R
Sbjct: 123 DEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGWDSLTMSIVLDALKTR 182

Query: 182 DLEMKQEKKEPKALFVKG-NKKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGR 241
           +LE+K+E+K+ + L  +G ++K+  +GK   FR     SK  G S+              
Sbjct: 183 NLEIKKERKDGELLMARGRSEKKSWKGKERSFR-----SKSKGKSR-------------- 238

Query: 242 ESDKSDIKCNYCHKTGHIKWDCP 264
                  KC  CHK GH K +CP
Sbjct: 243 -------KCFLCHKEGHFKKNCP 238

BLAST of Lag0015516 vs. NCBI nr
Match: KAA0050070.1 (putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 215.3 bits (547), Expect = 6.3e-52
Identity = 113/262 (43.13%), Postives = 172/262 (65.65%), Query Frame = 0

Query: 2   SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSS 61
           S RF++ K++G GDF LW+ KI A LVQ KVAK +LD  +LP  + ES++ +M+++ +S+
Sbjct: 3   STRFEVSKFNGNGDFALWRKKIRAILVQHKVAK-ILDEERLPENITESEKRDMDEMTYST 62

Query: 62  IILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILYLKERFFGFKMDPSKNLEENI 121
           I+L+L D VLR V + T + ELW KLE LYM K+L+N +Y+KE+FFG+KMD SK LEEN+
Sbjct: 63  ILLYLSDEVLRLVDEATTIGELWKKLESLYMKKSLSNKIYIKEKFFGYKMDQSKGLEENL 122

Query: 122 EDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLR 181
           ++F  I  DL N GE++ D++QAVILLNSLP+ ++EV  A+KYGRD + +  +L++++ R
Sbjct: 123 DEFQKIIVDLNNIGEKMSDENQAVILLNSLPEIYREVKAAIKYGRDSLNMSIMLDALKTR 182

Query: 182 DLEMKQEKKEPKALFVKGNKKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGRE 241
           +LE+K+E+K+ + L  +                + S+ K     +R +R  S+ ++    
Sbjct: 183 NLEIKKERKDGELLMAR----------------RRSEKKSWKGKERSSRSKSKEKSR--- 238

Query: 242 SDKSDIKCNYCHKTGHIKWDCP 264
                 KC  CHK GH K +CP
Sbjct: 243 ------KCFLCHKEGHFKKNCP 238

BLAST of Lag0015516 vs. NCBI nr
Match: TYK10340.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 211.5 bits (537), Expect = 9.1e-51
Identity = 113/263 (42.97%), Postives = 176/263 (66.92%), Query Frame = 0

Query: 2   SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSS 61
           S R ++ K++G GDF LW+ KI A L+Q KVAK +LD  +LP  + ES++ +M+++ +S+
Sbjct: 3   STRSEVSKFNGNGDFALWRKKIRAILIQHKVAK-ILDEERLPENITESEKRDMDEMTYST 62

Query: 62  IILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILYLKERFFGFKMDPSKNLEENI 121
           I+L+L D VLR V + T + ELW KLE LY+ K+L+N +Y+KE+FFG+KMD SK+LEEN+
Sbjct: 63  ILLYLSDEVLRLVDEATTIGELWKKLESLYLKKSLSNKIYIKEKFFGYKMDQSKSLEENL 122

Query: 122 EDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLR 181
           ++F  I  DL N GE++ D++QAVILLNSLP+ ++EV  A+KYGRD + +  +L++++ R
Sbjct: 123 DEFQKIIVDLNNIGEKMSDENQAVILLNSLPEIYREVKAAIKYGRDSLNMSIMLDALKTR 182

Query: 182 DLEMKQEKKEPKALFV-KGNKKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGR 241
           +LE+K+E K+ + L   + ++K+  +GK      ++S+SK  G S+              
Sbjct: 183 NLEIKKECKDGELLMARRRSEKKSWKGKE-----RSSRSKSKGKSR-------------- 238

Query: 242 ESDKSDIKCNYCHKTGHIKWDCP 264
                  KC  CHK GH+K +CP
Sbjct: 243 -------KCFLCHKEGHLKKNCP 238

BLAST of Lag0015516 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 5.4e-30
Identity = 80/260 (30.77%), Postives = 141/260 (54.23%), Query Frame = 0

Query: 4   RFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSSII 63
           ++++ K++G   F  W+ ++   L+QQ + K L   SK P T+   D  ++++ A S+I 
Sbjct: 5   KYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAIR 64

Query: 64  LHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILYLKERFFGFKMDPSKNLEENIED 123
           LHL D V+  +      R +W++LE LYM KTLTN LYLK++ +   M    N   ++  
Sbjct: 65  LHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNV 124

Query: 124 FNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLRDL 183
           FN + T L N G +++++D+A++LLNSLP ++  +   + +G+  I L+ V +++ L + 
Sbjct: 125 FNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKDVTSALLLNEK 184

Query: 184 EMKQEKKEPKALFVKGNKKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGRESD 243
             K+ + + +AL  +G      RG+++  R  N+  +     +  NR  SR +N      
Sbjct: 185 MRKKPENQGQALITEG------RGRSYQ-RSSNNYGRSGARGKSKNRSKSRVRN------ 244

Query: 244 KSDIKCNYCHKTGHIKWDCP 264
                C  C++ GH K DCP
Sbjct: 245 -----CYNCNQPGHFKRDCP 246

BLAST of Lag0015516 vs. ExPASy TrEMBL
Match: A0A5D3DNU1 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004440 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 3.9e-55
Identity = 120/263 (45.63%), Postives = 176/263 (66.92%), Query Frame = 0

Query: 2   SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSS 61
           S RF++ K++G GDF LW+ KI A LVQ KVAK +LD  +LP  + ES++ +M+++A+S+
Sbjct: 3   STRFEVSKFNGHGDFALWRKKIRAILVQHKVAK-ILDEERLPDNITESEKRDMDEMAYST 62

Query: 62  IILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILYLKERFFGFKMDPSKNLEENI 121
           I+L+L D VLR V + T   ELW KLE LY+ K+L N +Y+KE+FFG+KMD SK+LEEN+
Sbjct: 63  ILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKSLEENL 122

Query: 122 EDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLR 181
           ++F  I  DL N GE++ D++QAVILLNSLP+ ++EV  A+KYGRD +T+  VL++++ R
Sbjct: 123 DEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTR 182

Query: 182 DLEMKQEKKEPKALFVKG-NKKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGR 241
           +LE+K+E+K+ + L  +G ++K+  +GK   FR     SK  G S+              
Sbjct: 183 NLEIKKERKDGELLMARGRSEKKSWKGKERSFR-----SKSKGKSR-------------- 238

Query: 242 ESDKSDIKCNYCHKTGHIKWDCP 264
                  KC  CHK GH K +CP
Sbjct: 243 -------KCFLCHKEGHFKKNCP 238

BLAST of Lag0015516 vs. ExPASy TrEMBL
Match: A0A5A7UB25 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00190 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 3.9e-55
Identity = 120/263 (45.63%), Postives = 176/263 (66.92%), Query Frame = 0

Query: 2   SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSS 61
           S RF++ K++G GDF LW+ KI A LVQ KVAK +LD  +LP  + ES++ +M+++A+S+
Sbjct: 3   STRFEVSKFNGHGDFSLWRKKIRAILVQHKVAK-ILDEERLPDNITESEKRDMDEMAYST 62

Query: 62  IILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILYLKERFFGFKMDPSKNLEENI 121
           I+L+L D VLR V + T   ELW KLE LY+ K+L N +Y+KE+FFG+KMD SK+LEEN+
Sbjct: 63  ILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLLNKIYIKEKFFGYKMDQSKSLEENL 122

Query: 122 EDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLR 181
           ++F  I  DL N GE++ D++QAVILLNSLP+ ++EV  A+KYGRD +T+  VL++++ R
Sbjct: 123 DEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTR 182

Query: 182 DLEMKQEKKEPKALFVKG-NKKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGR 241
           +LE+K+E+K+ + L  +G ++K+  +GK   FR     SK  G S+              
Sbjct: 183 NLEIKKERKDGELLMARGRSEKKSWKGKERSFR-----SKSKGKSR-------------- 238

Query: 242 ESDKSDIKCNYCHKTGHIKWDCP 264
                  KC  CHK GH K +CP
Sbjct: 243 -------KCFLCHKEGHFKKNCP 238

BLAST of Lag0015516 vs. ExPASy TrEMBL
Match: A0A5A7U2U7 (Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00590 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 6.2e-53
Identity = 118/263 (44.87%), Postives = 173/263 (65.78%), Query Frame = 0

Query: 2   SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSS 61
           S RF++ K++G GDF LW+ KI A LVQ KVAK +LD  +LP  + ES++ +M+++A+ +
Sbjct: 3   STRFEVSKFNGHGDFALWRKKIRAILVQHKVAK-ILDEERLPDNITESEKRDMDEMAYWT 62

Query: 62  IILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILYLKERFFGFKMDPSKNLEENI 121
           I+L+L D VLR V + T   ELW KLE LY+ K+L N +Y+KE+FFG+KMD SK LEEN+
Sbjct: 63  ILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKILEENL 122

Query: 122 EDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLR 181
           ++F  I  DL N GE++ D++QAVILLNSLP+ ++EV  A+KYG D +T+  VL++++ R
Sbjct: 123 DEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGWDSLTMSIVLDALKTR 182

Query: 182 DLEMKQEKKEPKALFVKG-NKKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGR 241
           +LE+K+E+K+ + L  +G ++K+  +GK   FR     SK  G S+              
Sbjct: 183 NLEIKKERKDGELLMARGRSEKKSWKGKERSFR-----SKSKGKSR-------------- 238

Query: 242 ESDKSDIKCNYCHKTGHIKWDCP 264
                  KC  CHK GH K +CP
Sbjct: 243 -------KCFLCHKEGHFKKNCP 238

BLAST of Lag0015516 vs. ExPASy TrEMBL
Match: A0A5A7U459 (Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00520 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 3.1e-52
Identity = 113/262 (43.13%), Postives = 172/262 (65.65%), Query Frame = 0

Query: 2   SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSS 61
           S RF++ K++G GDF LW+ KI A LVQ KVAK +LD  +LP  + ES++ +M+++ +S+
Sbjct: 3   STRFEVSKFNGNGDFALWRKKIRAILVQHKVAK-ILDEERLPENITESEKRDMDEMTYST 62

Query: 62  IILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILYLKERFFGFKMDPSKNLEENI 121
           I+L+L D VLR V + T + ELW KLE LYM K+L+N +Y+KE+FFG+KMD SK LEEN+
Sbjct: 63  ILLYLSDEVLRLVDEATTIGELWKKLESLYMKKSLSNKIYIKEKFFGYKMDQSKGLEENL 122

Query: 122 EDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLR 181
           ++F  I  DL N GE++ D++QAVILLNSLP+ ++EV  A+KYGRD + +  +L++++ R
Sbjct: 123 DEFQKIIVDLNNIGEKMSDENQAVILLNSLPEIYREVKAAIKYGRDSLNMSIMLDALKTR 182

Query: 182 DLEMKQEKKEPKALFVKGNKKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGRE 241
           +LE+K+E+K+ + L  +                + S+ K     +R +R  S+ ++    
Sbjct: 183 NLEIKKERKDGELLMAR----------------RRSEKKSWKGKERSSRSKSKEKSR--- 238

Query: 242 SDKSDIKCNYCHKTGHIKWDCP 264
                 KC  CHK GH K +CP
Sbjct: 243 ------KCFLCHKEGHFKKNCP 238

BLAST of Lag0015516 vs. ExPASy TrEMBL
Match: A0A5D3CG50 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00150 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 4.4e-51
Identity = 113/263 (42.97%), Postives = 176/263 (66.92%), Query Frame = 0

Query: 2   SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSS 61
           S R ++ K++G GDF LW+ KI A L+Q KVAK +LD  +LP  + ES++ +M+++ +S+
Sbjct: 3   STRSEVSKFNGNGDFALWRKKIRAILIQHKVAK-ILDEERLPENITESEKRDMDEMTYST 62

Query: 62  IILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILYLKERFFGFKMDPSKNLEENI 121
           I+L+L D VLR V + T + ELW KLE LY+ K+L+N +Y+KE+FFG+KMD SK+LEEN+
Sbjct: 63  ILLYLSDEVLRLVDEATTIGELWKKLESLYLKKSLSNKIYIKEKFFGYKMDQSKSLEENL 122

Query: 122 EDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLR 181
           ++F  I  DL N GE++ D++QAVILLNSLP+ ++EV  A+KYGRD + +  +L++++ R
Sbjct: 123 DEFQKIIVDLNNIGEKMSDENQAVILLNSLPEIYREVKAAIKYGRDSLNMSIMLDALKTR 182

Query: 182 DLEMKQEKKEPKALFV-KGNKKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGR 241
           +LE+K+E K+ + L   + ++K+  +GK      ++S+SK  G S+              
Sbjct: 183 NLEIKKECKDGELLMARRRSEKKSWKGKE-----RSSRSKSKGKSR-------------- 238

Query: 242 ESDKSDIKCNYCHKTGHIKWDCP 264
                  KC  CHK GH+K +CP
Sbjct: 243 -------KCFLCHKEGHLKKNCP 238

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK25306.18.0e-5545.63putative gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0050719.18.0e-5545.63putative gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0047995.11.3e-5244.87retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa... [more]
KAA0050070.16.3e-5243.13putative polyprotein [Cucumis melo var. makuwa][more]
TYK10340.19.1e-5142.97Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
Match NameE-valueIdentityDescription
P109785.4e-3030.77Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Match NameE-valueIdentityDescription
A0A5D3DNU13.9e-5545.63Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A5A7UB253.9e-5545.63Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca... [more]
A0A5A7U2U76.2e-5344.87Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. maku... [more]
A0A5A7U4593.1e-5243.13Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675... [more]
A0A5D3CG504.4e-5142.97Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 248..264
e-value: 0.0085
score: 24.0
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 248..264
score: 8.729682
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 54..183
e-value: 1.8E-31
score: 108.8
NoneNo IPR availableGENE3D4.10.60.10coord: 237..266
e-value: 7.7E-6
score: 27.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 210..236
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 190..247
NoneNo IPR availablePANTHERPTHR34676:SF6SUBFAMILY NOT NAMEDcoord: 1..223
NoneNo IPR availablePANTHERPTHR34676FAMILY NOT NAMEDcoord: 1..223
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 231..265

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015516.1Lag0015516.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding