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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGTCAAGCTTTATGAGTCCAGTGAAGATTGATGTGGAGAAATTTGATGGAATGATGAACTTCGGCTTGTGGCAAGTGCAAGTCAAGGATGTGCTGATACAATCTTGGTTACACAAGGCTTTGAAGGGAAGACCAAGCGATAATGCTTCCGAAAGATTGGTAATGGTGGTCCAGTGGAGTCCAGTGGTGGTTCTTGTAGAGGTTCTAAGAAGTCCAGCATGAGTGATGAAGATTGGGAGGAAATGGATTTGAGAGCTGCAAGTGCAATTAGACTAAATTTGGCTAAGAACATTTTTGCAAATGTGCATGGAATTTCGACAGCCAAAGAGCTTTGGGAGGAGCTTGAAGGAATGTATCAATCAAGAGCATCTAAAATTGGTTGTACTTGAAGGAGCAGTTTTACACGCAGCGAATGGAGGAAGGTATGAAAATCTCAGATCATCTGAGTGTTCTCAATGGCATCATTTCAGAGTTGGAGGTGATCGAAGTTAAGATAGAGGATGAGGATAAGGCACTTAGGCTTATCTTGTCACTTCCAACTTCTTCTGAACACATGAGGCCAATCTTAATGTACAAGAAAGAAACTTTAAGTTTTGCTGATGTTACTAGTAAATTGTTATTAGAGGAAAGAAGGCTGAAGAGTGAAGGGCGTACTTCACAGGAGGATTCAGTGTTAGTAGCTAGCAATTGGAAGAAAAAGAAAGATTCCGTGCAGAAGAAAGGTTGTTGGGAATGCGGATAG mRNA sequence ATGTCAAGCTTTATGAGTCCAGTGAAGATTGATGTGGAGAAATTTGATGGAATGATGAACTTCGGCTTGTGGCAAGTGCAAGTCAAGGATGTGCTGATACAATCTTGGTTACACAAGGCTTTGAAGGGAAGACCAAGCGATAATGCTTCCGAAAGATTGGTAATGGTGGTCCAGTGGAGTCCAGTGGTGGTTCTTGTAGAGGAGCAGTTTTACACGCAGCGAATGGAGGAAGGTATGAAAATCTCAGATCATCTGAGTGTTCTCAATGGCATCATTTCAGAGTTGGAGGTGATCGAAGTTAAGATAGAGGATGAGGATAAGGCACTTAGGCTTATCTTGTCACTTCCAACTTCTTCTGAACACATGAGGCCAATCTTAATGTACAAGAAAGAAACTTTAAGTTTTGCTGATGTTACTAGTAAATTGTTATTAGAGGAAAGAAGGCTGAAGAGTGAAGGGCGTACTTCACAGGAGGATTCAGTGTTAGTAGCTAGCAATTGGAAGAAAAAGAAAGATTCCGTGCAGAAGAAAGGTTGTTGGGAATGCGGATAG Coding sequence (CDS) ATGTCAAGCTTTATGAGTCCAGTGAAGATTGATGTGGAGAAATTTGATGGAATGATGAACTTCGGCTTGTGGCAAGTGCAAGTCAAGGATGTGCTGATACAATCTTGGTTACACAAGGCTTTGAAGGGAAGACCAAGCGATAATGCTTCCGAAAGATTGGTAATGGTGGTCCAGTGGAGTCCAGTGGTGGTTCTTGTAGAGGAGCAGTTTTACACGCAGCGAATGGAGGAAGGTATGAAAATCTCAGATCATCTGAGTGTTCTCAATGGCATCATTTCAGAGTTGGAGGTGATCGAAGTTAAGATAGAGGATGAGGATAAGGCACTTAGGCTTATCTTGTCACTTCCAACTTCTTCTGAACACATGAGGCCAATCTTAATGTACAAGAAAGAAACTTTAAGTTTTGCTGATGTTACTAGTAAATTGTTATTAGAGGAAAGAAGGCTGAAGAGTGAAGGGCGTACTTCACAGGAGGATTCAGTGTTAGTAGCTAGCAATTGGAAGAAAAAGAAAGATTCCGTGCAGAAGAAAGGTTGTTGGGAATGCGGATAG Protein sequence MSSFMSPVKIDVEKFDGMMNFGLWQVQVKDVLIQSWLHKALKGRPSDNASERLVMVVQWSPVVVLVEEQFYTQRMEEGMKISDHLSVLNGIISELEVIEVKIEDEDKALRLILSLPTSSEHMRPILMYKKETLSFADVTSKLLLEERRLKSEGRTSQEDSVLVASNWKKKKDSVQKKGCWECG
Homology
BLAST of Lag0015492 vs. NCBI nr
Match: XP_022139673.1 (uncharacterized protein LOC111010521 [Momordica charantia]) HSP 1 Score: 241.9 bits (616), Expect = 4.3e-60 Identity = 144/249 (57.83%), Postives = 157/249 (63.05%), Query Frame = 0 Query: 1 MSSFMSPVKIDVEKFDGMMNFGLWQVQVKDVLIQSWLHKALKGRPSDNASERL------- 60 MS FMSPVKIDVEKFDGM+NFGLWQVQVKDVLIQS LHKALKGRPS+ ASE+L Sbjct: 295 MSFFMSPVKIDVEKFDGMINFGLWQVQVKDVLIQSELHKALKGRPSEGASEKLSDDGGPM 354
Query: 61 -----------------------------------------------VMVVQWSPVVVL- 120 W + L Sbjct: 355 ESSGGSSRGSKKSSMSYEDWEEMDLRAASAIRTSLAKNILANVHRISTAKELWEKLEALY 414
Query: 121 ----------VEEQFYTQRMEEGMKISDHLSVLNGIISELEVIEVKIEDEDKALRLILSL 180 ++EQF+T +MEEGMKISDHLS LN II ELE IEVKI+DEDKALRLILSL Sbjct: 415 QAKGISNRLYLKEQFHTLQMEEGMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLILSL 474
Query: 181 PTSSEHMRPILMYKKETLSFADVTSKLLLEERRLKSEGRTSQEDSVLVASNWKKKKDSVQ 184 P S EHM+PILMY K+TL+FA+VTSKLL EERRLKSEGRTS EDS LV SNWKKKKDSVQ Sbjct: 475 PXSYEHMKPILMYGKDTLNFAEVTSKLLSEERRLKSEGRTSHEDSALVVSNWKKKKDSVQ 534
BLAST of Lag0015492 vs. NCBI nr
Match: KAF5765959.1 (putative RNA-directed DNA polymerase [Helianthus annuus]) HSP 1 Score: 186.8 bits (473), Expect = 1.7e-43 Identity = 112/227 (49.34%), Postives = 137/227 (60.35%), Query Frame = 0 Query: 6 SPVKIDVEKFDGMMNFGLWQVQVKDVLIQSWLHKALKGRPSDNAS--------------- 65 SP++ DVEK+DG +NFGLWQVQVKDVLIQS LHKAL+G+P+ +S Sbjct: 5 SPMRFDVEKYDGRINFGLWQVQVKDVLIQSGLHKALRGKPTPVSSKDSSGTSKDDDEEWE 64
Query: 66 --------------------------------ERLVMVVQWS--PVVVLVEEQFYTQRME 125 E+L + Q P + ++EQF+T RM+ Sbjct: 65 DLDLRAASAIRLCLAKNVLANVHGISTAKDLWEKLEQLYQGKGIPNRLYLKEQFHTLRMD 124
Query: 126 EGMKISDHLSVLNGIISELEVIEVKIEDEDKALRLILSLPTSSEHMRPILMYKKETLSFA 184 KISDHLSVLN I+SELE I VK+EDEDKALRLILSL +S EHM+PILMY KETL +A Sbjct: 125 GDTKISDHLSVLNNIVSELEAIGVKVEDEDKALRLILSLTSSYEHMKPILMYGKETLKYA 184
BLAST of Lag0015492 vs. NCBI nr
Match: KAF5758504.1 (putative RNA-directed DNA polymerase [Helianthus annuus]) HSP 1 Score: 182.6 bits (462), Expect = 3.1e-42 Identity = 110/227 (48.46%), Postives = 136/227 (59.91%), Query Frame = 0 Query: 6 SPVKIDVEKFDGMMNFGLWQVQVKDVLIQSWLHKALKGRPSDNAS--------------- 65 SP++ VEK+DG +NFGLWQVQVKDVLIQS LHKAL+G+P+ +S Sbjct: 5 SPMRFVVEKYDGRINFGLWQVQVKDVLIQSGLHKALRGKPTPVSSKDSSGTSKDDDEEWE 64
Query: 66 --------------------------------ERLVMVVQWSPVV--VLVEEQFYTQRME 125 E+L + Q + + ++EQF+T RM+ Sbjct: 65 DLDLRAASAIRLCLAKNVLANVHGISTAKDLWEKLEQLYQGKGISNRLYLKEQFHTLRMD 124
Query: 126 EGMKISDHLSVLNGIISELEVIEVKIEDEDKALRLILSLPTSSEHMRPILMYKKETLSFA 184 KISDHLSVLN I+SELE I VK+EDEDKALRLILSL +S EHM+PILMY KETL +A Sbjct: 125 GDTKISDHLSVLNNIVSELEAIGVKVEDEDKALRLILSLTSSYEHMKPILMYGKETLKYA 184
BLAST of Lag0015492 vs. NCBI nr
Match: KAE8709065.1 (hypothetical protein F3Y22_tig00110332pilonHSYRG00834 [Hibiscus syriacus]) HSP 1 Score: 182.2 bits (461), Expect = 4.1e-42 Identity = 104/205 (50.73%), Postives = 138/205 (67.32%), Query Frame = 0 Query: 9 KIDVEKFDGMMNFGLWQVQVKDVLIQSWLHKALKG------------RPSDNASER---L 68 + D+EKFDG +NFGLWQVQVKD+LIQS L+KALKG +PSD++ ++ Sbjct: 4 RFDIEKFDGRINFGLWQVQVKDILIQSGLYKALKGKPASLSEGKEPDKPSDSSGDKGKSK 63
Query: 69 VMVVQWSPV--------------VVLVEEQFYTQRMEEGMKISDHLSVLNGIISELEVIE 128 + +W + VL E+F+ +MEEG KISDHLS LNGI+SELE I Sbjct: 64 MSEEEWEELDMRAASQIRLCLAKNVLANEKFHKLQMEEGTKISDHLSALNGIVSELESIG 123
Query: 129 VKIEDEDKALRLILSLPTSSEHMRPILMYKKETLSFADVTSKLLLEERRLKS-EGRTSQE 184 VKI+DEDKALRLI SLP+S EHM+ +LMY+KE ++F++VTSKL+ EERRLK+ E ++S+ Sbjct: 124 VKIDDEDKALRLIWSLPSSYEHMQTVLMYEKENVNFSEVTSKLISEERRLKNGENKSSES 183
BLAST of Lag0015492 vs. NCBI nr
Match: QHN81458.1 (Retrovirus-related Pol polyprotein [Arachis hypogaea]) HSP 1 Score: 180.3 bits (456), Expect = 1.6e-41 Identity = 106/221 (47.96%), Postives = 141/221 (63.80%), Query Frame = 0 Query: 1 MSSFMSPVKIDVEKFDGMMNFGLWQVQVKDVLIQSWLHKALKGRPSDNASE--------- 60 MS + S VK+++EKFDG +NFGLWQ+QVKDVLIQS LHKALK R S E Sbjct: 1 MSGYSSAVKLEIEKFDGRINFGLWQIQVKDVLIQSGLHKALKERISGMKDEEWEELDLRA 60
Query: 61 ----RLVMV------VQ--------WSPVV-----------VLVEEQFYTQRMEEGMKIS 120 RL + VQ W + +L++EQF+ RM+ +KIS Sbjct: 61 ASAIRLCLAKNVLANVQGIKTAKELWDKLEGLYQSKGISNRLLLKEQFHNLRMDHNVKIS 120
Query: 121 DHLSVLNGIISELEVIEVKIEDEDKALRLILSLPTSSEHMRPILMYKKETLSFADVTSKL 180 DHLS +NGI+SELE I VKI+DEDKALRLILSLP+S E+++P+LMY KETL+F +V SKL Sbjct: 121 DHLSAINGIVSELEAIGVKIDDEDKALRLILSLPSSYEYIKPVLMYGKETLNFEEVASKL 180
Query: 181 LLEERRLKSEGRTSQEDSVLVASNWKKKKDSVQKKGCWECG 184 + EERR+K+EG TS + +++ S+ K + + CW+CG Sbjct: 181 IAEERRMKNEGSTSSDLALVARSDNYGKGNRGRSVTCWKCG 221
BLAST of Lag0015492 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 1.1e-16 Identity = 61/194 (31.44%), Postives = 92/194 (47.42%), Query Frame = 0 Query: 5 MSPVKIDVEKFDGMMNFGLWQVQVKDVLIQSWLHKAL----------KGRPSDNASERLV 64 MS VK +V KF+G F WQ +++D+LIQ LHK L K + ER Sbjct: 1 MSGVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAA 60
Query: 65 MVVQ--------------------WSPVVVL-----------VEEQFYTQRMEEGMKISD 124 ++ W+ + L +++Q Y M EG Sbjct: 61 SAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLS 120
Query: 125 HLSVLNGIISELEVIEVKIEDEDKALRLILSLPTSSEHMRPILMYKKETLSFADVTSKLL 158 HL+V NG+I++L + VKIE+EDKA+ L+ SLP+S +++ +++ K T+ DVTS LL Sbjct: 121 HLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKDVTSALL 180
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022139673.1 | 4.3e-60 | 57.83 | uncharacterized protein LOC111010521 [Momordica charantia] | [more] |
KAF5765959.1 | 1.7e-43 | 49.34 | putative RNA-directed DNA polymerase [Helianthus annuus] | [more] |
KAF5758504.1 | 3.1e-42 | 48.46 | putative RNA-directed DNA polymerase [Helianthus annuus] | [more] |
KAE8709065.1 | 4.1e-42 | 50.73 | hypothetical protein F3Y22_tig00110332pilonHSYRG00834 [Hibiscus syriacus] | [more] |
QHN81458.1 | 1.6e-41 | 47.96 | Retrovirus-related Pol polyprotein [Arachis hypogaea] | [more] |
Match Name | E-value | Identity | Description | |
P10978 | 1.1e-16 | 31.44 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... | [more] |
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | PFAM | PF14223 | Retrotran_gag_2 | coord: 65..151 e-value: 7.1E-18 score: 64.7 |
None | No IPR available | PANTHER | PTHR34676 | FAMILY NOT NAMED | coord: 5..48 |
None | No IPR available | PANTHER | PTHR34676 | FAMILY NOT NAMED | coord: 67..177 |
None | No IPR available | PANTHER | PTHR34676:SF6 | SUBFAMILY NOT NAMED | coord: 67..177 coord: 5..48 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0005488 |
binding |
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