Lag0015399 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015399
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionchaperonin 60 beta
Locationchr12: 12205204 .. 12210186 (-)
RNA-Seq ExpressionLag0015399
SyntenyLag0015399
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTCTTTGTTTGCAAAGGTAAGAGAGTTTGAACTCAGATTTCTTCTCATGTCAACAAAGTTTACATCAAGTAGGTAAGGTTAAAATTATGGGTGGGTACTTAACTGGGGACGTGATAACAAGATGGGGTTTAGATTCCTGAAACAATTTTATAATCAACCTAACTTTTCTGTGTTTGTGTTGCTTAGAAAGAACTGTTCTATTTTCTAGTAGTGTAAACATGTTTACGTAGCTGTGTTTGTTTCCTTATCAAGCAACAAGTTTGTTATGTAAAAAAATAGTTTTGAAGACTATATATCAAATGTTTTTTTTAAATGAATCCTTGGATTTACAATTTGGACAGCCTTGTGGGTCAACCCTTTTCTTTAGTGTGTGACAACCTGTGACTCTTTGTTTGTTTAAATATTGTCAATGGAGCCCAATTGCAATGTTGAATATTTGTACCCTTTACTGTTTTTACCCAACTATGATTCTGAAGTTTAACCAAATGATTTCACATTTGCAGGTACCTTGTGCAACCAAAGCTGCAAGGCCAGAAAGAGTTCCCCTGCTAGAACTCGTAGGTCGAACTTGCCAGCGAACAATACAACCACATTGCTCGATGTTTTATGGTTTTTTCTGAGTTTTTTGCTAACTCAAATTCCAGCGAACAATCAAATTCCAACAATCGTCGGCTAGTCCTCCTTCCAACCATCACGCGAGGTTTTATGGTTTTTTCTGAGTTTTTTGCCAACTCCTATTTCGATCCCTCTTGCCTTAGTTTTTTGCCTCTCAGTCTTCCTGCAAGTATTTATTTCTAATTTTTATTTTGGAAAAACAGATTATCAAATTTAAGTTGTGTTTTAGTTGAAGCAATTTGATTATAACATAGTGATTTGGTTTCTACGTGAGAGATTATAACATAGTGACATTTTTTTTCGACTTCTTAGTGGAGAATGTTTCAAGATTTGGCTTGTTGCGCACTGTTTATTGATAGCTCTATTGTAATAAACCAAGTACCTTTTTTTTCTTGATTTTATTTGTTTTTGGGGTGGGCTTTGTGAGAGCTTAAAAAATCAAGCATGATAGAATGCTTTATGATGACTCATAGCTATTGTTTTTTATGTTCCACCCTACATACTCTCTTATTCCCTCTAATTAGTTTCAAGCTTTGTGATTTGAGGCTATTTGATTATCACTAAGCTTTTGGAATTGTCTAAGTAACTTTCAAAATTAGCAAGAAATAAAGAATGGAATGGTTGAAGGAAAAAGTCGTGCTTGAAAGAATTGGGTAAGACCCAAGTCTTATTCTAAATGGAAGATAAATACAGTTCAAATATAATCGATATTTTTTTTATAATGAACACTTCTTAATTATTAATTTGCTTCAAAATAGATTTAGATGAGTTATATGTATTATTAGCTTCTTTAACTTGAATAATGATTTGTAGTCATACTTTACAAAGATTTTTATTGAGTCTTGAAAAGGTAAACAACAGGTTGCTTCGTATGTAGTATCATCTTACATTGAAAGCCACTAATGGTGGTAATAAGAAGGTTTATGAAGCCAAAGTCCGTTTGAAGCCTTTGATGAACTTCAAAGAGTTGTAGGAATTCAAACCATCTCCATGTGGATCTTTAGGTACTATTATGCTTTTTGTGTTGAAAGTTAGGTACTGTTCTGCTTCTTGTGTTTAAAGTTGGTATGGAATCATTTTGATTGATATTGCTTCTATATTTTGTATATATGTCGGATCTTATTAGTCAATTTAGGTGCTTGCTTGCAATTTAATAGTTGAACCTATGTAAACGTCAATAGTGATTTCTTTCATTTTGTCTCTAATTAAAGATGATTTAGAGATAAATGAAATGGTAGTCGTGATGTTGTCTAAAAAATTGAACAAAGATTAAGGGTGTGAGACTAGTTGATCCTTAACATGTACATGCCAACAAATTGTTTTAGAGAACAAAGGGTCAAATACATGATTTTGGCTAGGAAAATGAAGTGAGCTTTGTTTATGGTCAACAAATACATGAAAATGGTCAAAGAATTTGTTAATCTCTAAATAATGCAGGTCGTTTCCCTACTATATTTCAACTATATGTTGGTAACTCAAATAAATGTCCACTAGAGTACATTTACTTTGAGAATGGGAATACCCTTTCCGAAACATCATGAACGCATGCCAAAATGTTTCTTTTGACAAGCCAGAAGAATCCATCTGAAGTGTAATTTATTGTTCCTTGGTAAAGAGATATACTATGTGTTGTTAGACACACGTGTTGTTAGCATGTTATGTTACTCTGCTATCCATGCATAGATTCAAGAAGCCTCATGATAGCCTCATTCCAATAGTCTCTTGTAATGTAATGTGAGGTGTGTTTACTGATCATGATGTTTTTTTTCGCTTTCATTTAGTAGCTTATGACGACAATATAGATGAGGGTAGCAATCTTTTTGGTGTTTTATAATGTTTACCTTTGTTTAATGCTTTTAGAATTTTGCATATGAACTAATTATGATGTGAGATGAATGCTTTGATTTTGGCAATATACGCAAACCTGTGATAATATATAGTTTATTTCCGGGTAACCTTTGTATAGTATTAGATGAATCAGCAAGTTGGCATTTTTGTGGCAGTGCTATTTGCCTGCATGGTTTTTTTGTTGGATTAGTAAGTTGCCATTTTTGTTAGCAGTGTTATTTGACCTGGGTTTTTTGTTGCCTTATCTATTGTTTCAGTAAATTTGAAGCATTATAGTTTTCTAGAGCCTAAGAGCCAAGCAAAAGAAATAAGGTTTTTTGGATTGTTGTGTGATGCACACCATAGACAAATAAAAATTTTATATATGAAAAAATATAGTAGTTTCAAATATTATTTTAGTCCATGTACTTTCGTGATTATTTTTCTTTATTCTTTAAACCTTTAAGGGTTCTATTATAGTTCTTGATCTTTGTGCAAGTACCATGAGAGAGTTGTATGTTGTTACTTCTAGTATTACTATGAGAGAGTTTTTTGTTGTTACTTCTAGTATTACTATTGAATGTTAGTTATTATTTTTCTCACTTTTGATTGGTTTTACTATCTAAAAATAGTGCAGGATATGATAATGCTAATGCTAGAGTTTTGGACTAAGAAGATCGATTCCATTTAGGAAAATGATATATAGTTGCTATTAGCACTCTGCCAGCTAACGTAAGGGTTGTATATCTAAAGATCAATTGGCAAATAATTTGCCTATATTTTTTAAGCTTTTAAGTCATTTTCATTATTATTTGGTTCAATTAAGCCTTTAATATGGCTTGTGTCAGCTAGGTTGAATTGGAGGATCTAGTTGAGAACATTGGTGCGAAGCTAGTCAGACAAAATGCTACAAAAACCAATGACTTGGCTAAGTAATGGAACTACACAATTTCATTTATTTTGGCTCAGGGTCTTATTATTGAAGGCATCAAGGTATTATTATGTTTATGCATCCCTACCTAGAATTTTACTAACTAATTTGAACATATTTTAGGTAGTATCACCTGGAGCAGACTCTGTCCTTATCACAAGAGGCATTGAAAAAACAGCCAAAGCTAGCATTGGTCTCTGAACTTGAAAAAAATGCCAAAAGAGGTAAAATTTTATGGTTTAACGATTTTGTCATTTGATGGTTGTGTGAACTGTTTCTTCATAGGCCATTGTATTTTGTGAATGTTTAGATCATTTTCTTGCTTCCCGTTGTGCATAGTTTAATAAATTGAGATTGATAGAACATGGATAGTTAAAGAATCTATTCTGGTTGTGTTTAAATTGTATTTGATCCGAGGTCTGACTCCCTTTGTTTTGTAGAAGTTGGGAGTCTGTTTGTTGACCTGAAGTTTTGTAGAAGTTTGGAATTGTTGTTGGTTTGGATTGCCTCTTTCTGTGTGAAGTTCAAGTTCTCTATGGCTCTCTTACTTCTCATGCTTGTGAAAATCTTGGTATTACAGTTCTACTCTAGAGTTAATTGGTTTGCTCTCTGAATTCAATGAAGCAGTGGATCAACTTGAGAGCAAAGTTAATCCAATTTTAAACAAGGTATGCTTTTGTCAAGTTTCCCCTATAATCGAGCATCGTTCATCCTTAATAAAAGGAATCATTTTATTTAGAATTGTGGATAGAAAGGTAGGCAAGTTTGAAGTTAAAGTTGGATTCTTAAATATTTCCTATGTATTTGGTGAGTTCTCTTATACTTATGTTTAGTTAATTAGCTATATGGTTTTCATTTTTCTTTGGCTGTTATTTTATTTCATAACTCTAAGAGAAACATATCCTACTTGATTCTGATGGTTGTAACGAGTAATCAAATTATGACAAGATTCTTTCACCATTTGGAACATAGCACAAGTTTTTTTTTTTTTTTTTTGAGGGGGTGAGATATTGTTCAGTTTACTCTCTCTTGGCATAGATTGGTGTCAAATAGAATCTTGTGCAAGCTATGAACTTTAGCTTCCATCAGGTATAAAATTTATGAAAACAAATCTTGTTTGTTTTTTTTTAACACACTACAACAAATATCCCTTTTTATAGCTTTTCAAGGTAGCCATGATTTGGAAGCTGCAACTACAACCTTGTTGCTAAGTTGAATCTCCTACATTTGACTTGAAATGATAGTCCTAATTAGTCACCTTTCAGTTTTTGTGTTTCAAATTAGTACCACTCTGTTTCATATGATTGCTAAATTACCATGGTGATTTTGATATTGTGGGATGTTAACCTTGAGAATGACTCTAATTTAACTTTACACTATTTCCTTTTGTTTTATGGAAAATGAGAAACTAAAGTGTTAGCTTTGTGACTTTCTTCCCGATTTATTGTGTTTTTAGTGGTAGTTTAGTTTATAACATGATAGTTTTTCTTAAAAGAAGTAAAGTTTATAGTATCGTGGTTTGTACTAACCCACCACTAAATTTTGCAGGTGATGGAGATTACTATGAATTGGGTGACGTTGAGGAGGAGGTCTGAGGAGGAATAA

mRNA sequence

ATGAATTCTTTGTTTGCAAAGGTACCTTGTGCAACCAAAGCTGCAAGGCCAGAAAGAGTTCCCCTGCTAGAACTCCGAACAATCAAATTCCAACAATCGTCGGCTAGTCCTCCTTCCAACCATCACGCGAGATTCAAGAAGCCTCATGATAGCCTCATTCCAATAGTCTCTTGTAATGTTGAATTGGAGGATCTAGTTGAGAACATTGGTGCGAAGCTAGTCAGACAAAATGCTACAAAAACCAATGACTTGGCTAATTCTACTCTAGAGTTAATTGGTTTGCTCTCTGAATTCAATGAAGCAGTGGATCAACTTGAGAGCAAAGTTAATCCAATTTTAAACAAGGTGATGGAGATTACTATGAATTGGGTGACGTTGAGGAGGAGGTCTGAGGAGGAATAA

Coding sequence (CDS)

ATGAATTCTTTGTTTGCAAAGGTACCTTGTGCAACCAAAGCTGCAAGGCCAGAAAGAGTTCCCCTGCTAGAACTCCGAACAATCAAATTCCAACAATCGTCGGCTAGTCCTCCTTCCAACCATCACGCGAGATTCAAGAAGCCTCATGATAGCCTCATTCCAATAGTCTCTTGTAATGTTGAATTGGAGGATCTAGTTGAGAACATTGGTGCGAAGCTAGTCAGACAAAATGCTACAAAAACCAATGACTTGGCTAATTCTACTCTAGAGTTAATTGGTTTGCTCTCTGAATTCAATGAAGCAGTGGATCAACTTGAGAGCAAAGTTAATCCAATTTTAAACAAGGTGATGGAGATTACTATGAATTGGGTGACGTTGAGGAGGAGGTCTGAGGAGGAATAA

Protein sequence

MNSLFAKVPCATKAARPERVPLLELRTIKFQQSSASPPSNHHARFKKPHDSLIPIVSCNVELEDLVENIGAKLVRQNATKTNDLANSTLELIGLLSEFNEAVDQLESKVNPILNKVMEITMNWVTLRRRSEEE
Homology
[Close]
BLAST of Lag0015399 vs. NCBI nr
Match: XP_038875489.1 (something about silencing protein 10 isoform X2 [Benincasa hispida])

HSP 1 Score: 54.3 bits (129), Expect = 9.3e-04
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 84  LANSTLELIGLLSEFNEAVDQLESKVNPILNKV 117
           L++S  ELIGLLSE NEAVDQLESKVNP+LNKV
Sbjct: 228 LSSSAPELIGLLSELNEAVDQLESKVNPVLNKV 260

[Close]
BLAST of Lag0015399 vs. NCBI nr
Match: XP_038875490.1 (something about silencing protein 10 isoform X3 [Benincasa hispida])

HSP 1 Score: 54.3 bits (129), Expect = 9.3e-04
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 84  LANSTLELIGLLSEFNEAVDQLESKVNPILNKV 117
           L++S  ELIGLLSE NEAVDQLESKVNP+LNKV
Sbjct: 228 LSSSAPELIGLLSELNEAVDQLESKVNPVLNKV 260

[Close]
BLAST of Lag0015399 vs. NCBI nr
Match: XP_038875486.1 (something about silencing protein 10 isoform X1 [Benincasa hispida] >XP_038875487.1 something about silencing protein 10 isoform X1 [Benincasa hispida] >XP_038875488.1 something about silencing protein 10 isoform X1 [Benincasa hispida])

HSP 1 Score: 54.3 bits (129), Expect = 9.3e-04
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 84  LANSTLELIGLLSEFNEAVDQLESKVNPILNKV 117
           L++S  ELIGLLSE NEAVDQLESKVNP+LNKV
Sbjct: 228 LSSSAPELIGLLSELNEAVDQLESKVNPVLNKV 260

[Close]
BLAST of Lag0015399 vs. NCBI nr
Match: XP_038875491.1 (something about silencing protein 10 isoform X4 [Benincasa hispida])

HSP 1 Score: 54.3 bits (129), Expect = 9.3e-04
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 84  LANSTLELIGLLSEFNEAVDQLESKVNPILNKV 117
           L++S  ELIGLLSE NEAVDQLESKVNP+LNKV
Sbjct: 121 LSSSAPELIGLLSELNEAVDQLESKVNPVLNKV 153

[Close]
BLAST of Lag0015399 vs. ExPASy Swiss-Prot
Match: C0Z361 (Chaperonin 60 subunit beta 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN60B3 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.9e-05
Identity = 30/60 (50.00%), Postives = 38/60 (63.33%), Query Frame = 0 

Query: 56  VSCNVELEDLVENIGAKLVRQNATKTNDLA--NSTLELIGLLSEFNEAVDQLESKVNPIL 114
           V+  VELED VENIGAKLVRQ A+KTNDLA   +T  ++       E V  + +  NP+L
Sbjct: 107 VAREVELEDPVENIGAKLVRQAASKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVL 166

[Close]
BLAST of Lag0015399 vs. ExPASy Swiss-Prot
Match: P21240 (Chaperonin 60 subunit beta 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN60B1 PE=1 SV=3)

HSP 1 Score: 48.9 bits (115), Expect = 5.1e-05
Identity = 30/60 (50.00%), Postives = 37/60 (61.67%), Query Frame = 0 

Query: 56  VSCNVELEDLVENIGAKLVRQNATKTNDLA--NSTLELIGLLSEFNEAVDQLESKVNPIL 114
           V+  VELED VENIGAKLVRQ A KTNDLA   +T  ++       E V  + +  NP+L
Sbjct: 111 VAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVL 170

[Close]
BLAST of Lag0015399 vs. ExPASy Swiss-Prot
Match: Q9LJE4 (Chaperonin 60 subunit beta 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN60B2 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 5.1e-05
Identity = 30/60 (50.00%), Postives = 37/60 (61.67%), Query Frame = 0 

Query: 56  VSCNVELEDLVENIGAKLVRQNATKTNDLA--NSTLELIGLLSEFNEAVDQLESKVNPIL 114
           V+  VELED VENIGAKLVRQ A KTNDLA   +T  ++       E V  + +  NP+L
Sbjct: 107 VAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVL 166

[Close]
BLAST of Lag0015399 vs. ExPASy Swiss-Prot
Match: P21241 (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Brassica napus OX=3708 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 5.1e-05
Identity = 30/60 (50.00%), Postives = 37/60 (61.67%), Query Frame = 0 

Query: 56  VSCNVELEDLVENIGAKLVRQNATKTNDLA--NSTLELIGLLSEFNEAVDQLESKVNPIL 114
           V+  VELED VENIGAKLVRQ A KTNDLA   +T  ++       E V  + +  NP+L
Sbjct: 111 VAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVL 170

[Close]
BLAST of Lag0015399 vs. ExPASy Swiss-Prot
Match: P08927 (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum OX=3888 PE=1 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 5.1e-05
Identity = 30/60 (50.00%), Postives = 37/60 (61.67%), Query Frame = 0 

Query: 56  VSCNVELEDLVENIGAKLVRQNATKTNDLA--NSTLELIGLLSEFNEAVDQLESKVNPIL 114
           V+  VELED VENIGAKLVRQ A KTNDLA   +T  ++       E V  + +  NP+L
Sbjct: 105 VAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVL 164

The following BLAST results are available for this feature:
BLAST of Lag0015399 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038875489.19.3e-0481.82something about silencing protein 10 isoform X2 [Benincasa hispida][more]
XP_038875490.19.3e-0481.82something about silencing protein 10 isoform X3 [Benincasa hispida][more]
XP_038875486.19.3e-0481.82something about silencing protein 10 isoform X1 [Benincasa hispida] >XP_03887548... [more]
XP_038875491.19.3e-0481.82something about silencing protein 10 isoform X4 [Benincasa hispida][more]
BLAST of Lag0015399 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
C0Z3613.9e-0550.00Chaperonin 60 subunit beta 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=C... [more]
P212405.1e-0550.00Chaperonin 60 subunit beta 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=C... [more]
Q9LJE45.1e-0550.00Chaperonin 60 subunit beta 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=C... [more]
P212415.1e-0550.00RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Brassica na... [more]
P089275.1e-0550.00RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativ... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015399.1Lag0015399.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006457 protein folding