Lag0015345 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015345
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCysteine-rich RLK (Receptor-like protein kinase) 8
Locationchr12: 11051724 .. 11053539 (-)
RNA-Seq ExpressionLag0015345
SyntenyLag0015345
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGTAGCGCCTCGTTGCTGCCTCAATTGTGTGCCTTCTGCTGGATGGGTAGCGTTGAGACGCCCAAGGGTAGCGTCTCAACGCTACCCTCTCGGATTGAGAGGTTGAATCATTGCATTTCTCTCTCATTTCTTCACTCGACTTTATTCTTTTGCTCCCAAATCACTGGTATTCATCAAAAACATCAATTTCCATCCAAAAACTTGACTCCTACAAAATTAAATCAAATGTACATAAAATTGGCCAAATAATCTTCAAGACTAACACTAAAAATACTATAAAATATAGCTCATTAATTAAGTTATCACCCTCTAAGAAAAATTCTATTACATTTTGAGACTTGAGTCTAGTACAACTTTATTCATTATTTAAAATTTTATTTTAATTTTGAAGATTCAAACTTTTTTTTTTCTGCATTTTATACATTCAAATGTTTTATTTCAATTCATAATATTTTAAAGAAAATATATTTTTATACTGACATTTAGTAAATTTTTTTTTTTTTTTAGTTCAATAATCAAATCTTACTTGAAATGACATGGCCTTACTCTTATGCCACATGTATTGAGTTGATATTGTGCTTAGAAACAAGTCATTGAAATTTTAAATTTTGTTATACCGAATATAGAAATTATTAATGTCCTAACTGAATTATTACTTGTAATCGGTTGATTAGTTTGTTATTAGTTTATCAGTTAGTTTGTCAAGTTGTGCAAAAGATTTATGGGATGAACTAAAAGAACGATATCGGCAGACAAATGGACCTTGAATCTTTCAATTACGCAAGCAACTAATCACAACGACTCAAGGAACGACGACCATTGAAGACTATTACACCAAAAGCACTACGATTTGACAAGAACTCATCGTGCTCAGATTCTTCTCATCAGCCCTCTACCAACTATGAATAAGGTCTTTTCTCTCATTATTCAAGAAGAATCACAGCGAACTGCAGGAAATTTATCCGGAGTTTTGCCCACCCCTATTGAATCGGTGACCTTAGCAGCAGCGAAAGATAAGAAGAATTCACAAGATCGTTCTCGTAGAAAAGAGAGGGACATCGACCTATTTGTTCACATTGTGGAGTTAAAGGTCATGTAGTAGATCATTGTTACAAGCTACATGGTTATCCATTGGGTTATAGACGACCAATTAGTATGCTACTTTTGAAAAGAACATAGAAGCTGGCAGTTCCAATAATCAAAATCAATCCGCTTTCTGTGCAAGTTTAAGCAGTGACCAATACTCTCAGCTGATGGGATTGCTTCAGAATCAACTTTTCCTAAGGCAAATTCTAAAGATACACATACAACTCACGTAGCAGGTACTACTTTAACTGCTTTCTCCAATATACATGATGAAGTTATTGGTTCTTGGGTGGTAGACTCGGGTGCATCTAGCCACATATGCCTGTAAATCTTTGTTCATAGATTTACGGCCTGCAAACAATATTTCTGTCATTTTGCCTACTCAAACTCGGTTTATTGTTTAACAAATTGGGGATGTTAAAATAAATCAGTAGATGATTCTACGAGATGTTCTATTTCTGCCACAGTTTACATATAACCTCTTGTCAGTCAGCGCTTTATTACAGGATAGCAGATATATTGTTAACTCTTCGGGTGACTCTTGTTATATCCAGGACAAGTTACTATTGAAGAAGATTGGTAAGGTTGACTGTGTTAGAGGCCTTTATCTTTTTTACATACCTAAAGAGTCTGCTGAAATGGTTCACTCTGTTTTCTCTGCTAAGATAGTCAATCTGCTGATATTTGGCACCAACGCTTGGGGCGTTTGTCTTCTGCTCGTCTAA

mRNA sequence

ATGGAGGTAGCGCCTCGTTGCTGCCTCAATTGTGTGCCTTCTGCTGGATGGATTCTTCTCATCAGCCCTCTACCAACTATGAATAAGGTCTTTTCTCTCATTATTCAAGAAGAATCACAGCGAACTGCAGGAAATTTATCCGGAGTTTTGCCCACCCCTATTGAATCGGTGACCTTAGCAGCAGCGAAAGATAAGAAGAATTCACAAGATCGTTCTCGTAGAAAAGAGAGGGACATCGACCTATTTGTTCACATTGTGGAGTTAAAGGACAAGTTACTATTGAAGAAGATTGGTAAGGTTGACTGTGTTAGAGGCCTTTATCTTTTTTACATACCTAAAGAGTCTGCTGAAATGGTTCACTCTGTTTTCTCTGCTAAGATAGTCAATCTGCTGATATTTGGCACCAACGCTTGGGGCGTTTGTCTTCTGCTCGTCTAA

Coding sequence (CDS)

ATGGAGGTAGCGCCTCGTTGCTGCCTCAATTGTGTGCCTTCTGCTGGATGGATTCTTCTCATCAGCCCTCTACCAACTATGAATAAGGTCTTTTCTCTCATTATTCAAGAAGAATCACAGCGAACTGCAGGAAATTTATCCGGAGTTTTGCCCACCCCTATTGAATCGGTGACCTTAGCAGCAGCGAAAGATAAGAAGAATTCACAAGATCGTTCTCGTAGAAAAGAGAGGGACATCGACCTATTTGTTCACATTGTGGAGTTAAAGGACAAGTTACTATTGAAGAAGATTGGTAAGGTTGACTGTGTTAGAGGCCTTTATCTTTTTTACATACCTAAAGAGTCTGCTGAAATGGTTCACTCTGTTTTCTCTGCTAAGATAGTCAATCTGCTGATATTTGGCACCAACGCTTGGGGCGTTTGTCTTCTGCTCGTCTAA

Protein sequence

MEVAPRCCLNCVPSAGWILLISPLPTMNKVFSLIIQEESQRTAGNLSGVLPTPIESVTLAAAKDKKNSQDRSRRKERDIDLFVHIVELKDKLLLKKIGKVDCVRGLYLFYIPKESAEMVHSVFSAKIVNLLIFGTNAWGVCLLLV
Homology
[Close]
BLAST of Lag0015345 vs. NCBI nr
Match: KAA0031937.1 (retroelement pol polyprotein-like [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 9.2e-05
Identity = 37/102 (36.27%), Postives = 60/102 (58.82%), Query Frame = 0 

Query: 18  ILLISPLPTMNKVFSLIIQEESQRTAGNLSGVLPTPIESVTLAAAKDK-KNSQDRSRRKE 77
           +LL+ P+P++++ FSL++QEE QR   + S  + TP  ++ LAA+ +  KN+    +RK+
Sbjct: 60  LLLMEPIPSISRAFSLLLQEEQQRAISSFSPAINTP--TIALAASSNNPKNNSAHKQRKD 119

Query: 78  RDI----DLFVHIVE--LKDKLLLKKIGKVDCVRGLYLFYIP 113
           R I    ++  H V+   KDK   KKIG     +GLY+   P
Sbjct: 120 RPICTHCNIPGHTVDRCYKDKYTSKKIGSAKLFQGLYILDQP 159

[Close]
BLAST of Lag0015345 vs. NCBI nr
Match: TYK16758.1 (Copia protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 9.2e-05
Identity = 37/102 (36.27%), Postives = 60/102 (58.82%), Query Frame = 0 

Query: 18  ILLISPLPTMNKVFSLIIQEESQRTAGNLSGVLPTPIESVTLAAAKDK-KNSQDRSRRKE 77
           +LL+ P+P++++ FSL++QEE QR   + S  + TP  ++ LAA+ +  KN+    +RK+
Sbjct: 60  LLLMEPIPSISRAFSLLLQEEQQRAISSFSPAINTP--TIALAASSNNPKNNSAHKQRKD 119

Query: 78  RDI----DLFVHIVE--LKDKLLLKKIGKVDCVRGLYLFYIP 113
           R I    ++  H V+   KDK   KKIG     +GLY+   P
Sbjct: 120 RPICTHCNIPGHTVDRCYKDKYTSKKIGSAKLFQGLYILDQP 159

[Close]
BLAST of Lag0015345 vs. NCBI nr
Match: KAA0065480.1 (Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa] >TYK08721.1 Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 1.6e-04
Identity = 32/60 (53.33%), Postives = 41/60 (68.33%), Query Frame = 0 

Query: 18  ILLISPLPTMNKVFSLIIQEESQRTAGNLSGVLPTPIESVTLAAAKDKKNSQDRSRRKER 77
           ILL+ PLP++N VFSL+IQEE QR+A    G+L  PI+ V L  A     S DR+R+KER
Sbjct: 211 ILLMQPLPSINTVFSLLIQEEQQRSA----GILTPPIDPVALNIASSMAISTDRNRKKER 266

The following BLAST results are available for this feature:
BLAST of Lag0015345 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0031937.19.2e-0536.27retroelement pol polyprotein-like [Cucumis melo var. makuwa][more]
TYK16758.19.2e-0536.27Copia protein [Cucumis melo var. makuwa][more]
KAA0065480.11.6e-0453.33Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa] >T... [more]
BLAST of Lag0015345 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015345.1Lag0015345.1mRNA