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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCCTCCCCAACGCTCATGACTCCCTGTACTTCCAAATCTCAGCCTCTCGTCGTCCCCCTCAAGCCCAAATCCACCACCTCCGCCGCCGCATCCACCGCCGCCGCCGCCGCCCACAATCCCCGCCGCCGCCAGTTCCTGTCCTTGACGGCCTCTGTTCTGGCGGCGCCGTGGGTTCTGTTTCGTCCGGCGCCGGCGCAGGCCTCGGCGGACGACGAGGAGTACGTGAAGGACACGAACGAGGTGATAAGCAAGGTGAGGACGACGATCAACATGGACAAGAACGACCCGAACGTGGCGGCGGCGGTGGCGGAGCTTCGAGAAAGTTCGAATTCGTGGGTGGCGAAGTACAGGAAGGAGAAGGCTCTGTTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCTCTGAATGCGGTGTCGGGGCATTACATTAGCTTTGGGCCGACGGCGCCGATTCCGGCGAAGAGGAAGGCCAGGATTTTGGAAGAGATGGACACTGCTGAGAAGGCTCTGCTAAGAGGGAGATGA mRNA sequence ATGGCCTCCCCAACGCTCATGACTCCCTGTACTTCCAAATCTCAGCCTCTCGTCGTCCCCCTCAAGCCCAAATCCACCACCTCCGCCGCCGCATCCACCGCCGCCGCCGCCGCCCACAATCCCCGCCGCCGCCAGTTCCTGTCCTTGACGGCCTCTGTTCTGGCGGCGCCGTGGGTTCTGTTTCGTCCGGCGCCGGCGCAGGCCTCGGCGGACGACGAGGAGTACGTGAAGGACACGAACGAGGTGATAAGCAAGGTGAGGACGACGATCAACATGGACAAGAACGACCCGAACGTGGCGGCGGCGGTGGCGGAGCTTCGAGAAAGTTCGAATTCGTGGGTGGCGAAGTACAGGAAGGAGAAGGCTCTGTTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCTCTGAATGCGGTGTCGGGGCATTACATTAGCTTTGGGCCGACGGCGCCGATTCCGGCGAAGAGGAAGGCCAGGATTTTGGAAGAGATGGACACTGCTGAGAAGGCTCTGCTAAGAGGGAGATGA Coding sequence (CDS) ATGGCCTCCCCAACGCTCATGACTCCCTGTACTTCCAAATCTCAGCCTCTCGTCGTCCCCCTCAAGCCCAAATCCACCACCTCCGCCGCCGCATCCACCGCCGCCGCCGCCGCCCACAATCCCCGCCGCCGCCAGTTCCTGTCCTTGACGGCCTCTGTTCTGGCGGCGCCGTGGGTTCTGTTTCGTCCGGCGCCGGCGCAGGCCTCGGCGGACGACGAGGAGTACGTGAAGGACACGAACGAGGTGATAAGCAAGGTGAGGACGACGATCAACATGGACAAGAACGACCCGAACGTGGCGGCGGCGGTGGCGGAGCTTCGAGAAAGTTCGAATTCGTGGGTGGCGAAGTACAGGAAGGAGAAGGCTCTGTTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCTCTGAATGCGGTGTCGGGGCATTACATTAGCTTTGGGCCGACGGCGCCGATTCCGGCGAAGAGGAAGGCCAGGATTTTGGAAGAGATGGACACTGCTGAGAAGGCTCTGCTAAGAGGGAGATGA Protein sequence MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAAAAHNPRRRQFLSLTASVLAAPWVLFRPAPAQASADDEEYVKDTNEVISKVRTTINMDKNDPNVAAAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Homology
BLAST of Lag0015065 vs. NCBI nr
Match: XP_023529218.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 275.4 bits (703), Expect = 3.4e-70 Identity = 149/175 (85.14%), Postives = 158/175 (90.29%), Query Frame = 0 Query: 1 MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAAAAHNPRRRQFLSLTASVLAAPWVL 60 MAS TL+TPCTSKSQPL++P KPKST S AAA H+PRRR+ LSLTASVLAAPWVL Sbjct: 1 MASRTLLTPCTSKSQPLIIPPKPKSTIS------AAAVHHPRRRELLSLTASVLAAPWVL 60
Query: 61 FRPAPAQASADDEEYVKDTNEVISKVRTTINMDKNDPNVAAAVAELRESSNSWVAKYRKE 120 PAPAQAS +DEEYVKDTNEVI+KVRTTI MDKNDPNVA AVAELRESSNSWVAKYRKE Sbjct: 61 LPPAPAQAS-NDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKE 120
Query: 121 KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 176 K+LLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEMDTAEKAL RGR Sbjct: 121 KSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMDTAEKALSRGR 168
BLAST of Lag0015065 vs. NCBI nr
Match: XP_022930794.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata]) HSP 1 Score: 274.6 bits (701), Expect = 5.8e-70 Identity = 149/175 (85.14%), Postives = 158/175 (90.29%), Query Frame = 0 Query: 1 MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAAAAHNPRRRQFLSLTASVLAAPWVL 60 MAS TL+TPCTSKSQPL++P KPKST S AAA H+PRRR+ LSLTASVLAAPWVL Sbjct: 1 MASRTLLTPCTSKSQPLIIPPKPKSTIS------AAAIHHPRRRELLSLTASVLAAPWVL 60
Query: 61 FRPAPAQASADDEEYVKDTNEVISKVRTTINMDKNDPNVAAAVAELRESSNSWVAKYRKE 120 PAPAQAS +DEEYVKDTNEVISKVRTTI MDKNDPNVA AVAELRESSNSWVAKYRKE Sbjct: 61 LPPAPAQAS-NDEEYVKDTNEVISKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKE 120
Query: 121 KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 176 K+LLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR Sbjct: 121 KSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 168
BLAST of Lag0015065 vs. NCBI nr
Match: XP_022988975.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 274.6 bits (701), Expect = 5.8e-70 Identity = 149/175 (85.14%), Postives = 157/175 (89.71%), Query Frame = 0 Query: 1 MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAAAAHNPRRRQFLSLTASVLAAPWVL 60 MAS L+TPCTSKSQPL++P KPKST S AAA H+PRRR+ LSLTASVLAAPWVL Sbjct: 1 MASRALLTPCTSKSQPLIIPPKPKSTIS------AAAVHHPRRRELLSLTASVLAAPWVL 60
Query: 61 FRPAPAQASADDEEYVKDTNEVISKVRTTINMDKNDPNVAAAVAELRESSNSWVAKYRKE 120 PAPAQAS +DEEYVKDTNEVISKVRTTI MDKNDPNVA AVAELRESSNSWVAKYRKE Sbjct: 61 LPPAPAQAS-NDEEYVKDTNEVISKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKE 120
Query: 121 KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 176 K+LLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEMDTAEKAL RGR Sbjct: 121 KSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMDTAEKALSRGR 168
BLAST of Lag0015065 vs. NCBI nr
Match: KAG6589210.1 (Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022910.1 Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 270.4 bits (690), Expect = 1.1e-68 Identity = 147/175 (84.00%), Postives = 157/175 (89.71%), Query Frame = 0 Query: 1 MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAAAAHNPRRRQFLSLTASVLAAPWVL 60 MAS TL+TPCTSKSQPL++P KPKST S AAA H+ RRR+ LSLTASVLAAPWVL Sbjct: 1 MASRTLLTPCTSKSQPLIIPPKPKSTIS------AAAVHHRRRRELLSLTASVLAAPWVL 60
Query: 61 FRPAPAQASADDEEYVKDTNEVISKVRTTINMDKNDPNVAAAVAELRESSNSWVAKYRKE 120 PAPAQAS +DEEYVKDTNEVI+KVRTTI MDKNDPNVA AVAELRESSNSWVAKYRKE Sbjct: 61 LPPAPAQAS-NDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKE 120
Query: 121 KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 176 K+LLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR Sbjct: 121 KSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 168
BLAST of Lag0015065 vs. NCBI nr
Match: XP_022952622.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata] >XP_022969270.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 269.2 bits (687), Expect = 2.4e-68 Identity = 149/175 (85.14%), Postives = 157/175 (89.71%), Query Frame = 0 Query: 1 MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAAAAHNPRRRQFLSLTASVLAAPWVL 60 MASPTL+TP TSKSQPL++PLKPKS+ SAAA+T H RRR+FLSLTASVLA WVL Sbjct: 1 MASPTLITPSTSKSQPLIIPLKPKSSISAAATT--TTHHYSRRREFLSLTASVLAPSWVL 60
Query: 61 FRPAPAQASADDEEYVKDTNEVISKVRTTINMDKNDPNVAAAVAELRESSNSWVAKYRKE 120 F PAPA AS+ DEEYVKDT EVI KVRTTI MDKNDPNVAAAVAELRESSNSWVAKYRKE Sbjct: 61 FPPAPALASS-DEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKE 120
Query: 121 KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 176 K+LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR Sbjct: 121 KSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 172
BLAST of Lag0015065 vs. ExPASy Swiss-Prot
Match: Q9LR64 (Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-1 PE=1 SV=1) HSP 1 Score: 188.3 bits (477), Expect = 7.1e-47 Identity = 110/171 (64.33%), Postives = 129/171 (75.44%), Query Frame = 0 Query: 12 SKSQPLVVPLKPKSTTSAAASTAAAAAHNPR-----RRQFLSL--TASVLAAPWVLFRPA 71 S + L+ P P + AS+ + PR RR FLSL T+++L PA Sbjct: 5 SATATLLKPNLPPHKPTIIASSVSPPLPPPRRNHLLRRDFLSLAATSTLLTQSIQFLAPA 64
Query: 72 PAQASADDEEYVKDTNEVISKVRTTINMDKNDPNVAAAVAELRESSNSWVAKYRKEKALL 131 P A A+DEEY+KDT+ VISKVR+T++M K DPNVA AVAELRE+SNSWVAKYRKEKALL Sbjct: 65 PVSA-AEDEEYIKDTSAVISKVRSTLSMQKTDPNVADAVAELREASNSWVAKYRKEKALL 124
Query: 132 GRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 176 G+ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR Sbjct: 125 GKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALTRGR 174
BLAST of Lag0015065 vs. ExPASy Swiss-Prot
Match: Q9ZVZ9 (Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-2 PE=1 SV=1) HSP 1 Score: 50.4 bits (119), Expect = 2.3e-05 Identity = 31/122 (25.41%), Postives = 65/122 (53.28%), Query Frame = 0 Query: 53 VLAAPWVLFRPAPAQASADD--EEYVKDTNEVISKVRTTINMD-KNDPNVAAAVAELRES 112 V+ A LF P S + + Y+K EV+ +R ++ + K++ + +ES Sbjct: 78 VVGAFKTLFDPNERTKSGKELPKAYLKSAREVVKTMRESLKENPKDNAKFRRSADAAKES 137
Query: 113 SNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEK 172 +++ +R +K + G S+ ++ + + A++ Y GP+AP+P + K IL++++ AE+ Sbjct: 138 IRDYLSNWRGQKTVAGEESYVELENVIRALAKFYSKAGPSAPLPDEVKTEILDDLNKAEE 197
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_023529218.1 | 3.4e-70 | 85.14 | photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita pepo subsp... | [more] |
XP_022930794.1 | 5.8e-70 | 85.14 | photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata] | [more] |
XP_022988975.1 | 5.8e-70 | 85.14 | photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita maxima] | [more] |
KAG6589210.1 | 1.1e-68 | 84.00 | Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyro... | [more] |
XP_022952622.1 | 2.4e-68 | 85.14 | photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata] ... | [more] |
Match Name | E-value | Identity | Description | |
Q9LR64 | 7.1e-47 | 64.33 | Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana OX... | [more] |
Q9ZVZ9 | 2.3e-05 | 25.41 | Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabid... | [more] |
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR038450 | Photosystem II Pbs27 superfamily | GENE3D | 1.20.58.810 | Photosystem II Pbs27 | coord: 70..175 e-value: 1.1E-40 score: 140.4 |
IPR025585 | Photosystem II Pbs27 | PFAM | PF13326 | PSII_Pbs27 | coord: 43..171 e-value: 9.9E-34 score: 116.6 |
IPR025585 | Photosystem II Pbs27 | PANTHER | PTHR34041 | PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTIC | coord: 1..175 |
IPR025585 | Photosystem II Pbs27 | HAMAP | MF_01481 | PSII_Psb27 | coord: 41..171 score: 23.827961 |
None | No IPR available | PANTHER | PTHR34041:SF1 | PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTIC | coord: 1..175 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0071484 |
cellular response to light intensity |
biological_process |
GO:0010207 |
photosystem II assembly |
biological_process |
GO:0010206 |
photosystem II repair |
cellular_component |
GO:0009543 |
chloroplast thylakoid lumen |
cellular_component |
GO:0009523 |
photosystem II |
|