Lag0015065 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015065
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionphotosystem II repair protein PSB27-H1, chloroplastic-like
Locationchr12: 7213881 .. 7214408 (+)
RNA-Seq ExpressionLag0015065
SyntenyLag0015065
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCCCCAACGCTCATGACTCCCTGTACTTCCAAATCTCAGCCTCTCGTCGTCCCCCTCAAGCCCAAATCCACCACCTCCGCCGCCGCATCCACCGCCGCCGCCGCCGCCCACAATCCCCGCCGCCGCCAGTTCCTGTCCTTGACGGCCTCTGTTCTGGCGGCGCCGTGGGTTCTGTTTCGTCCGGCGCCGGCGCAGGCCTCGGCGGACGACGAGGAGTACGTGAAGGACACGAACGAGGTGATAAGCAAGGTGAGGACGACGATCAACATGGACAAGAACGACCCGAACGTGGCGGCGGCGGTGGCGGAGCTTCGAGAAAGTTCGAATTCGTGGGTGGCGAAGTACAGGAAGGAGAAGGCTCTGTTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCTCTGAATGCGGTGTCGGGGCATTACATTAGCTTTGGGCCGACGGCGCCGATTCCGGCGAAGAGGAAGGCCAGGATTTTGGAAGAGATGGACACTGCTGAGAAGGCTCTGCTAAGAGGGAGATGA

mRNA sequence

ATGGCCTCCCCAACGCTCATGACTCCCTGTACTTCCAAATCTCAGCCTCTCGTCGTCCCCCTCAAGCCCAAATCCACCACCTCCGCCGCCGCATCCACCGCCGCCGCCGCCGCCCACAATCCCCGCCGCCGCCAGTTCCTGTCCTTGACGGCCTCTGTTCTGGCGGCGCCGTGGGTTCTGTTTCGTCCGGCGCCGGCGCAGGCCTCGGCGGACGACGAGGAGTACGTGAAGGACACGAACGAGGTGATAAGCAAGGTGAGGACGACGATCAACATGGACAAGAACGACCCGAACGTGGCGGCGGCGGTGGCGGAGCTTCGAGAAAGTTCGAATTCGTGGGTGGCGAAGTACAGGAAGGAGAAGGCTCTGTTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCTCTGAATGCGGTGTCGGGGCATTACATTAGCTTTGGGCCGACGGCGCCGATTCCGGCGAAGAGGAAGGCCAGGATTTTGGAAGAGATGGACACTGCTGAGAAGGCTCTGCTAAGAGGGAGATGA

Coding sequence (CDS)

ATGGCCTCCCCAACGCTCATGACTCCCTGTACTTCCAAATCTCAGCCTCTCGTCGTCCCCCTCAAGCCCAAATCCACCACCTCCGCCGCCGCATCCACCGCCGCCGCCGCCGCCCACAATCCCCGCCGCCGCCAGTTCCTGTCCTTGACGGCCTCTGTTCTGGCGGCGCCGTGGGTTCTGTTTCGTCCGGCGCCGGCGCAGGCCTCGGCGGACGACGAGGAGTACGTGAAGGACACGAACGAGGTGATAAGCAAGGTGAGGACGACGATCAACATGGACAAGAACGACCCGAACGTGGCGGCGGCGGTGGCGGAGCTTCGAGAAAGTTCGAATTCGTGGGTGGCGAAGTACAGGAAGGAGAAGGCTCTGTTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCTCTGAATGCGGTGTCGGGGCATTACATTAGCTTTGGGCCGACGGCGCCGATTCCGGCGAAGAGGAAGGCCAGGATTTTGGAAGAGATGGACACTGCTGAGAAGGCTCTGCTAAGAGGGAGATGA

Protein sequence

MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAAAAHNPRRRQFLSLTASVLAAPWVLFRPAPAQASADDEEYVKDTNEVISKVRTTINMDKNDPNVAAAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Homology
[Close]
BLAST of Lag0015065 vs. NCBI nr
Match: XP_023529218.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 275.4 bits (703), Expect = 3.4e-70
Identity = 149/175 (85.14%), Postives = 158/175 (90.29%), Query Frame = 0 

Query: 1   MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAAAAHNPRRRQFLSLTASVLAAPWVL 60
           MAS TL+TPCTSKSQPL++P KPKST S      AAA H+PRRR+ LSLTASVLAAPWVL
Sbjct: 1   MASRTLLTPCTSKSQPLIIPPKPKSTIS------AAAVHHPRRRELLSLTASVLAAPWVL 60

Query: 61  FRPAPAQASADDEEYVKDTNEVISKVRTTINMDKNDPNVAAAVAELRESSNSWVAKYRKE 120
             PAPAQAS +DEEYVKDTNEVI+KVRTTI MDKNDPNVA AVAELRESSNSWVAKYRKE
Sbjct: 61  LPPAPAQAS-NDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKE 120

Query: 121 KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 176
           K+LLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEMDTAEKAL RGR
Sbjct: 121 KSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMDTAEKALSRGR 168

[Close]
BLAST of Lag0015065 vs. NCBI nr
Match: XP_022930794.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 274.6 bits (701), Expect = 5.8e-70
Identity = 149/175 (85.14%), Postives = 158/175 (90.29%), Query Frame = 0 

Query: 1   MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAAAAHNPRRRQFLSLTASVLAAPWVL 60
           MAS TL+TPCTSKSQPL++P KPKST S      AAA H+PRRR+ LSLTASVLAAPWVL
Sbjct: 1   MASRTLLTPCTSKSQPLIIPPKPKSTIS------AAAIHHPRRRELLSLTASVLAAPWVL 60

Query: 61  FRPAPAQASADDEEYVKDTNEVISKVRTTINMDKNDPNVAAAVAELRESSNSWVAKYRKE 120
             PAPAQAS +DEEYVKDTNEVISKVRTTI MDKNDPNVA AVAELRESSNSWVAKYRKE
Sbjct: 61  LPPAPAQAS-NDEEYVKDTNEVISKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKE 120

Query: 121 KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 176
           K+LLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Sbjct: 121 KSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 168

[Close]
BLAST of Lag0015065 vs. NCBI nr
Match: XP_022988975.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 274.6 bits (701), Expect = 5.8e-70
Identity = 149/175 (85.14%), Postives = 157/175 (89.71%), Query Frame = 0 

Query: 1   MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAAAAHNPRRRQFLSLTASVLAAPWVL 60
           MAS  L+TPCTSKSQPL++P KPKST S      AAA H+PRRR+ LSLTASVLAAPWVL
Sbjct: 1   MASRALLTPCTSKSQPLIIPPKPKSTIS------AAAVHHPRRRELLSLTASVLAAPWVL 60

Query: 61  FRPAPAQASADDEEYVKDTNEVISKVRTTINMDKNDPNVAAAVAELRESSNSWVAKYRKE 120
             PAPAQAS +DEEYVKDTNEVISKVRTTI MDKNDPNVA AVAELRESSNSWVAKYRKE
Sbjct: 61  LPPAPAQAS-NDEEYVKDTNEVISKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKE 120

Query: 121 KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 176
           K+LLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEMDTAEKAL RGR
Sbjct: 121 KSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMDTAEKALSRGR 168

[Close]
BLAST of Lag0015065 vs. NCBI nr
Match: KAG6589210.1 (Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022910.1 Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 270.4 bits (690), Expect = 1.1e-68
Identity = 147/175 (84.00%), Postives = 157/175 (89.71%), Query Frame = 0 

Query: 1   MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAAAAHNPRRRQFLSLTASVLAAPWVL 60
           MAS TL+TPCTSKSQPL++P KPKST S      AAA H+ RRR+ LSLTASVLAAPWVL
Sbjct: 1   MASRTLLTPCTSKSQPLIIPPKPKSTIS------AAAVHHRRRRELLSLTASVLAAPWVL 60

Query: 61  FRPAPAQASADDEEYVKDTNEVISKVRTTINMDKNDPNVAAAVAELRESSNSWVAKYRKE 120
             PAPAQAS +DEEYVKDTNEVI+KVRTTI MDKNDPNVA AVAELRESSNSWVAKYRKE
Sbjct: 61  LPPAPAQAS-NDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKE 120

Query: 121 KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 176
           K+LLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Sbjct: 121 KSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 168

[Close]
BLAST of Lag0015065 vs. NCBI nr
Match: XP_022952622.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata] >XP_022969270.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 269.2 bits (687), Expect = 2.4e-68
Identity = 149/175 (85.14%), Postives = 157/175 (89.71%), Query Frame = 0 

Query: 1   MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAAAAHNPRRRQFLSLTASVLAAPWVL 60
           MASPTL+TP TSKSQPL++PLKPKS+ SAAA+T     H  RRR+FLSLTASVLA  WVL
Sbjct: 1   MASPTLITPSTSKSQPLIIPLKPKSSISAAATT--TTHHYSRRREFLSLTASVLAPSWVL 60

Query: 61  FRPAPAQASADDEEYVKDTNEVISKVRTTINMDKNDPNVAAAVAELRESSNSWVAKYRKE 120
           F PAPA AS+ DEEYVKDT EVI KVRTTI MDKNDPNVAAAVAELRESSNSWVAKYRKE
Sbjct: 61  FPPAPALASS-DEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKE 120

Query: 121 KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 176
           K+LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 KSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 172

[Close]
BLAST of Lag0015065 vs. ExPASy Swiss-Prot
Match: Q9LR64 (Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-1 PE=1 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 7.1e-47
Identity = 110/171 (64.33%), Postives = 129/171 (75.44%), Query Frame = 0 

Query: 12  SKSQPLVVPLKPKSTTSAAASTAAAAAHNPR-----RRQFLSL--TASVLAAPWVLFRPA 71
           S +  L+ P  P    +  AS+ +     PR     RR FLSL  T+++L        PA
Sbjct: 5   SATATLLKPNLPPHKPTIIASSVSPPLPPPRRNHLLRRDFLSLAATSTLLTQSIQFLAPA 64

Query: 72  PAQASADDEEYVKDTNEVISKVRTTINMDKNDPNVAAAVAELRESSNSWVAKYRKEKALL 131
           P  A A+DEEY+KDT+ VISKVR+T++M K DPNVA AVAELRE+SNSWVAKYRKEKALL
Sbjct: 65  PVSA-AEDEEYIKDTSAVISKVRSTLSMQKTDPNVADAVAELREASNSWVAKYRKEKALL 124

Query: 132 GRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 176
           G+ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Sbjct: 125 GKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALTRGR 174

[Close]
BLAST of Lag0015065 vs. ExPASy Swiss-Prot
Match: Q9ZVZ9 (Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-2 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.3e-05
Identity = 31/122 (25.41%), Postives = 65/122 (53.28%), Query Frame = 0 

Query: 53  VLAAPWVLFRPAPAQASADD--EEYVKDTNEVISKVRTTINMD-KNDPNVAAAVAELRES 112
           V+ A   LF P     S  +  + Y+K   EV+  +R ++  + K++     +    +ES
Sbjct: 78  VVGAFKTLFDPNERTKSGKELPKAYLKSAREVVKTMRESLKENPKDNAKFRRSADAAKES 137

Query: 113 SNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEK 172
              +++ +R +K + G  S+ ++ + + A++  Y   GP+AP+P + K  IL++++ AE+
Sbjct: 138 IRDYLSNWRGQKTVAGEESYVELENVIRALAKFYSKAGPSAPLPDEVKTEILDDLNKAEE 197

The following BLAST results are available for this feature:
BLAST of Lag0015065 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023529218.13.4e-7085.14photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita pepo subsp... [more]
XP_022930794.15.8e-7085.14photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata][more]
XP_022988975.15.8e-7085.14photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita maxima][more]
KAG6589210.11.1e-6884.00Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyro... [more]
XP_022952622.12.4e-6885.14photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata] ... [more]
BLAST of Lag0015065 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LR647.1e-4764.33Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana OX... [more]
Q9ZVZ92.3e-0525.41Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabid... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038450Photosystem II Pbs27 superfamilyGENE3D1.20.58.810Photosystem II Pbs27coord: 70..175
e-value: 1.1E-40
score: 140.4
IPR025585Photosystem II Pbs27PFAMPF13326PSII_Pbs27coord: 43..171
e-value: 9.9E-34
score: 116.6
IPR025585Photosystem II Pbs27PANTHERPTHR34041PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTICcoord: 1..175
IPR025585Photosystem II Pbs27HAMAPMF_01481PSII_Psb27coord: 41..171
score: 23.827961
NoneNo IPR availablePANTHERPTHR34041:SF1PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTICcoord: 1..175

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015065.1Lag0015065.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071484 cellular response to light intensity
biological_process GO:0010207 photosystem II assembly
biological_process GO:0010206 photosystem II repair
cellular_component GO:0009543 chloroplast thylakoid lumen
cellular_component GO:0009523 photosystem II