Lag0013494 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0013494
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr1: 50742873 .. 50743262 (+)
RNA-Seq ExpressionLag0013494
SyntenyLag0013494
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCGAAGGGATTAATTGCATCAGAAATACCTGTATTCAATACAACATTGGCTTGGAAATGGAAGTCGACTCGTTGGAGCTTATCAACACCATTAATGCCGTCTCCGAGAACCTCATCGAGCTGTCGAATGTGGTGGAGGCAATCTCTTCGACGGTTTCGTCGCTTACGGTGGCTGAATTTCGTCACTGTGGAAAGGGAGTCAACGCAAAAGCCCACTGCGATACCCGTCTTGTAGCTTCCGCATCTTCTGTTCCTAATTCAGTTTCTTCTTCTTTTGATTCCCAGAGGCGTTCCTCTTCGTGGGAACATGGCTGTATTTTTTGGGCCCGTGGTTTTCCTACGTGGATTCTTTCCCTCCTTAATGAAGGTGGTTGTTTTGTTGGTTAG

mRNA sequence

ATGCTCGAAGGGATTAATTGCATCAGAAATACCTGTATTCAATACAACATTGGCTTGGAAATGGAAGTCGACTCGTTGGAGCTTATCAACACCATTAATGCCGTCTCCGAGAACCTCATCGAGCTGTCGAATGTGGTGGAGGCAATCTCTTCGACGGTTTCGTCGCTTACGGTGGCTGAATTTCGTCACTGTGGAAAGGGAGTCAACGCAAAAGCCCACTGCGATACCCGTCTTGTAGCTTCCGCATCTTCTGTTCCTAATTCAGTTTCTTCTTCTTTTGATTCCCAGAGGCGTTCCTCTTCGTGGGAACATGGCTGTATTTTTTGGGCCCGTGGTTTTCCTACGTGGATTCTTTCCCTCCTTAATGAAGGTGGTTGTTTTGTTGGTTAG

Coding sequence (CDS)

ATGCTCGAAGGGATTAATTGCATCAGAAATACCTGTATTCAATACAACATTGGCTTGGAAATGGAAGTCGACTCGTTGGAGCTTATCAACACCATTAATGCCGTCTCCGAGAACCTCATCGAGCTGTCGAATGTGGTGGAGGCAATCTCTTCGACGGTTTCGTCGCTTACGGTGGCTGAATTTCGTCACTGTGGAAAGGGAGTCAACGCAAAAGCCCACTGCGATACCCGTCTTGTAGCTTCCGCATCTTCTGTTCCTAATTCAGTTTCTTCTTCTTTTGATTCCCAGAGGCGTTCCTCTTCGTGGGAACATGGCTGTATTTTTTGGGCCCGTGGTTTTCCTACGTGGATTCTTTCCCTCCTTAATGAAGGTGGTTGTTTTGTTGGTTAG

Protein sequence

MLEGINCIRNTCIQYNIGLEMEVDSLELINTINAVSENLIELSNVVEAISSTVSSLTVAEFRHCGKGVNAKAHCDTRLVASASSVPNSVSSSFDSQRRSSSWEHGCIFWARGFPTWILSLLNEGGCFVG
Homology
The following BLAST results are available for this feature:
BLAST of Lag0013494 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0013494 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 3..74
e-value: 1.3E-4
score: 21.8

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0013494.1Lag0013494.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity