Lag0012042 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0012042
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr1: 36793748 .. 36795055 (-)
RNA-Seq Expression	Lag0012042
Synteny	Lag0012042

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGATTACAACAAAGGAACGGAATAGCCTTAACCTACCCCTTATTCCCAGCCCCCACTCGACACGGGCATTTATTACCTCAAGCGTTGCATTTTTCGAGCGAGAAGGACTAGTTCCATACCTGGCCTTTTCGAAGGGGGATGGTCGGCCTCGGCCTTGGCATGAGGCTGACCAGCAGCTCTGTACTACTTGCTCGCAGACGTCCAGGCTTATGTGCAGATTTGCCCGATTCTACCTTAAGCATCTCCCTGCGGCCTTGAGCGCCTCGACTGCGCCAAAAAGTAAAGTGACTGTGCTAAAGGCACGCTGCCTTGAATGTGTGCTTGATGGTTGGCCTTGGAGTTGGGATGTTTGGCCTTGGCATGACGATGCGTACACTCTTCTGGGGAAAAGGCTTGGGGAGGCCCAAGAAATTTCCGAGCATCTCTTCAAGCTGTCACGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGGGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGGGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTTGTAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGCTGTATTCATCCCGAGGGTGCATACACTCAGTCGGGGGAAGTGCGGAAGTCTGGCCACACGCGTTACCTCCTATGGAAAAAGCATTTTATGCGAAACACAATGCAAAAAACTTCATTAA

mRNA sequence

ATGATGATTACAACAAAGGAACGGAATAGCCTTAACCTACCCCTTATTCCCAGCCCCCACTCGACACGGGCATTTATTACCTCAAGCGTTGCATTTTTCGAGCGAGAAGGACTAGTTCCATACCTGGCCTTTTCGAAGGGGGATGGTCGGCCTCGGCCTTGGCATGAGGCTGACCAGCAGCTCTGTACTACTTGCTCGCAGACGTCCAGGCTTATGTGCAGATTTGCCCGATTCTACCTTAAGCATCTCCCTGCGGCCTTGAGCGCCTCGACTGCGCCAAAAAGTAAAGTGACTGTGCTAAAGGCACGCTGCCTTGAATGTGTGCTTGATGGTTGGCCTTGGAGTTGGGATGTTTGGCCTTGGCATGACGATGCGTACACTCTTCTGGGGAAAAGGCTTGGGGAGGCCCAAGAAATTTCCGAGCATCTCTTCAAGCTGTCACGGTCATCCCAGGGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGGGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGGGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTTGTAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGCTGTATTCATCCCGAGGGTGCATACACTCAGTCGGGGGAAGTGCGGAAGTCTGGCCACACGCGTTACCTCCTATGGAAAAAGCATTTTATGCGAAACACAATGCAAAAAACTTCATTAA

Coding sequence (CDS)

ATGATGATTACAACAAAGGAACGGAATAGCCTTAACCTACCCCTTATTCCCAGCCCCCACTCGACACGGGCATTTATTACCTCAAGCGTTGCATTTTTCGAGCGAGAAGGACTAGTTCCATACCTGGCCTTTTCGAAGGGGGATGGTCGGCCTCGGCCTTGGCATGAGGCTGACCAGCAGCTCTGTACTACTTGCTCGCAGACGTCCAGGCTTATGTGCAGATTTGCCCGATTCTACCTTAAGCATCTCCCTGCGGCCTTGAGCGCCTCGACTGCGCCAAAAAGTAAAGTGACTGTGCTAAAGGCACGCTGCCTTGAATGTGTGCTTGATGGTTGGCCTTGGAGTTGGGATGTTTGGCCTTGGCATGACGATGCGTACACTCTTCTGGGGAAAAGGCTTGGGGAGGCCCAAGAAATTTCCGAGCATCTCTTCAAGCTGTCACGGTCATCCCAGGGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGGGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGGGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTTGTAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGCTGTATTCATCCCGAGGGTGCATACACTCAGTCGGGGGAAGTGCGGAAGTCTGGCCACACGCGTTACCTCCTATGGAAAAAGCATTTTATGCGAAACACAATGCAAAAAACTTCATTAA

Protein sequence

MMITTKERNSLNLPLIPSPHSTRAFITSSVAFFEREGLVPYLAFSKGDGRPRPWHEADQQLCTTCSQTSRLMCRFARFYLKHLPAALSASTAPKSKVTVLKARCLECVLDGWPWSWDVWPWHDDAYTLLGKRLGEAQEISEHLFKLSRSSQGLGEAKEIPEPLFKRHGHPRGAYTLLGKSLGRPRKFPSLSSSCHGHPRGAYTLLGKGLGRPRKFPSLSSSVMVIPGVRTLFWGKAWGGLGNSRASLQASWSSQGCVHSSGERLGEAKEIPEPLFKRHGHPRGAYTLLGKSLGRPRKFPGLSSSVMVIPGVRTLFWGKAWGGLGNSRASLQAVVVIPGVRTLFWGKAWGGLGNSRASLQAAVFIPRVHTLSRGKCGSLATRVTSYGKSILCETQCKKLH

Homology

The following BLAST results are available for this feature:

BLAST of Lag0012042 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0012042 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0012042 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0012042 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017956	AT hook, DNA-binding motif	SMART	SM00384	AT_hook_2	coord: 206..218 e-value: 3.1 score: 12.5 coord: 178..190 e-value: 11.0 score: 9.4 coord: 289..301 e-value: 14.0 score: 8.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0012042.1	Lag0012042.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding