Lag0012016 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0012016
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr1: 36353259 .. 36353594 (+)
RNA-Seq ExpressionLag0012016
SyntenyLag0012016
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAATCAACCAGAATTGGTCGATCCTTTCTTTAGAAGCCATGACTTTGAGGGAAGGGCTATCGAATTACCTCAATCACGCGGATTGCATATCTCTTCCTCTCTTCGTGGAGTCTGATTCAACGGGGTTGATCAAGCTTCTCCAGGGGAAGGACTATGATCTCTCTGAGGCGAGGAATATCTTGGACGATATCGAGAATTTGGCGAGAGACGTGGTGTTCATCTCCTTTTCTTGGTGCTCGAGATCAAGCAATCGGGCGACCAACTTTTTAGCTCATGAAGCGAGAAATTCCAGTTCGATAGAACCTCATTCGAGAGGAATTTCGTTAGTCTAG

mRNA sequence

ATGAAAATCAACCAGAATTGGTCGATCCTTTCTTTAGAAGCCATGACTTTGAGGGAAGGGCTATCGAATTACCTCAATCACGCGGATTGCATATCTCTTCCTCTCTTCGTGGAGTCTGATTCAACGGGGTTGATCAAGCTTCTCCAGGGGAAGGACTATGATCTCTCTGAGGCGAGGAATATCTTGGACGATATCGAGAATTTGGCGAGAGACGTGGTGTTCATCTCCTTTTCTTGGTGCTCGAGATCAAGCAATCGGGCGACCAACTTTTTAGCTCATGAAGCGAGAAATTCCAGTTCGATAGAACCTCATTCGAGAGGAATTTCGTTAGTCTAG

Coding sequence (CDS)

ATGAAAATCAACCAGAATTGGTCGATCCTTTCTTTAGAAGCCATGACTTTGAGGGAAGGGCTATCGAATTACCTCAATCACGCGGATTGCATATCTCTTCCTCTCTTCGTGGAGTCTGATTCAACGGGGTTGATCAAGCTTCTCCAGGGGAAGGACTATGATCTCTCTGAGGCGAGGAATATCTTGGACGATATCGAGAATTTGGCGAGAGACGTGGTGTTCATCTCCTTTTCTTGGTGCTCGAGATCAAGCAATCGGGCGACCAACTTTTTAGCTCATGAAGCGAGAAATTCCAGTTCGATAGAACCTCATTCGAGAGGAATTTCGTTAGTCTAG

Protein sequence

MKINQNWSILSLEAMTLREGLSNYLNHADCISLPLFVESDSTGLIKLLQGKDYDLSEARNILDDIENLARDVVFISFSWCSRSSNRATNFLAHEARNSSSIEPHSRGISLV
Homology
The following BLAST results are available for this feature:
BLAST of Lag0012016 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0012016 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 2..95
e-value: 4.8E-10
score: 39.3
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 3..101
e-value: 2.5E-5
score: 26.2
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 8..93
e-value: 6.86134E-11
score: 53.0868

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0012016.1Lag0012016.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity