Lag0011850 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0011850
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr1: 33825510 .. 33825935 (-)
RNA-Seq ExpressionLag0011850
SyntenyLag0011850
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTGCGTTTGGGTTTTCGTAATTGCTTTGGTGTTGATAGTGTTGGTAGTAAAGGCGACCTTGCTATATTGTGGTTTGAAGAAGTTACCTTTGCCTTGAATTCATACTCTTGTTATCATATCGATGGTTGGGTCAATTGGCAGGATAAACAATGGCGCGTGACCGGGTTCTATGGTTCCCCTTACGCAGAACTTCAGTCTAATTCGTGGAATATCCTCCGACATCTCCAGGGTAGTGCTTCTGTTCCCTGGGTTGTTGGGGGTGACTTTAATGCCCTTATGTATCACTCTGATAAGGAGGGGGGTCGCCCATGTGTTGATAGTGATCTTCAGATTTTCCATTTTGTCTTAGACGACTTGGCGTTAGTGGATTTGGGTTTCCGGGGGCCCCGTTTCGCTTGGTGTAACCGTCAGCCGGGTTGA

mRNA sequence

ATGAAGTTGCGTTTGGGTTTTCGTAATTGCTTTGGTGTTGATAGTGTTGGTAGTAAAGGCGACCTTGCTATATTGTGGTTTGAAGAAGTTACCTTTGCCTTGAATTCATACTCTTGTTATCATATCGATGGTTGGGTCAATTGGCAGGATAAACAATGGCGCGTGACCGGGTTCTATGGTTCCCCTTACGCAGAACTTCAGTCTAATTCGTGGAATATCCTCCGACATCTCCAGGGTAGTGCTTCTGTTCCCTGGGTTGTTGGGGGTGACTTTAATGCCCTTATGTATCACTCTGATAAGGAGGGGGGTCGCCCATGTGTTGATAGTGATCTTCAGATTTTCCATTTTGTCTTAGACGACTTGGCGTTAGTGGATTTGGGTTTCCGGGGGCCCCGTTTCGCTTGGTGTAACCGTCAGCCGGGTTGA

Coding sequence (CDS)

ATGAAGTTGCGTTTGGGTTTTCGTAATTGCTTTGGTGTTGATAGTGTTGGTAGTAAAGGCGACCTTGCTATATTGTGGTTTGAAGAAGTTACCTTTGCCTTGAATTCATACTCTTGTTATCATATCGATGGTTGGGTCAATTGGCAGGATAAACAATGGCGCGTGACCGGGTTCTATGGTTCCCCTTACGCAGAACTTCAGTCTAATTCGTGGAATATCCTCCGACATCTCCAGGGTAGTGCTTCTGTTCCCTGGGTTGTTGGGGGTGACTTTAATGCCCTTATGTATCACTCTGATAAGGAGGGGGGTCGCCCATGTGTTGATAGTGATCTTCAGATTTTCCATTTTGTCTTAGACGACTTGGCGTTAGTGGATTTGGGTTTCCGGGGGCCCCGTTTCGCTTGGTGTAACCGTCAGCCGGGTTGA

Protein sequence

MKLRLGFRNCFGVDSVGSKGDLAILWFEEVTFALNSYSCYHIDGWVNWQDKQWRVTGFYGSPYAELQSNSWNILRHLQGSASVPWVVGGDFNALMYHSDKEGGRPCVDSDLQIFHFVLDDLALVDLGFRGPRFAWCNRQPG
Homology
BLAST of Lag0011850 vs. NCBI nr
Match: KAF5449841.1 (hypothetical protein F2P56_030246 [Juglans regia])

HSP 1 Score: 153.7 bits (387), Expect = 1.2e-33
Identity = 68/141 (48.23%), Postives = 93/141 (65.96%), Query Frame = 0

Query: 2   KLRLGFRNCFGVDSVGSKGDLAILWFEEVTFALNSYSCYHIDGWVNWQD-KQWRVTGFYG 61
           K + GF NCF VD VG  G L++LW  E++ +++S+S YHID  +   D  +WR TG YG
Sbjct: 48  KYKFGFVNCFFVDCVGRSGGLSLLWKREISVSISSFSRYHIDACIQESDLAEWRFTGVYG 107

Query: 62  SPYAELQSNSWNILRHLQGSASVPWVVGGDFNALMYHSDKEGGRPCVDSDLQIFHFVLDD 121
            P A  +  +WN++R L  S S PW+VGGDFN ++Y  +K GGRP   + L+ F  V++D
Sbjct: 108 HPDASNRYLTWNLMRTLCPSTSGPWLVGGDFNEVLYLHEKRGGRPWPYAQLENFRAVMED 167

Query: 122 LALVDLGFRGPRFAWCNRQPG 142
            AL DLGF+GPRF WCN + G
Sbjct: 168 CALQDLGFQGPRFTWCNGRTG 188

BLAST of Lag0011850 vs. NCBI nr
Match: XP_041001573.1 (uncharacterized protein LOC121247264 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 145.2 bits (365), Expect = 4.3e-31
Identity = 61/141 (43.26%), Postives = 90/141 (63.83%), Query Frame = 0

Query: 2   KLRLGFRNCFGVDSVGSKGDLAILWFEEVTFALNSYSCYHIDGWVNWQDK-QWRVTGFYG 61
           K +LGF NCF +DSVG  G L+++W  ++   L S+S YHID  +  +D  +WR TG YG
Sbjct: 48  KFKLGFTNCFSIDSVGRSGGLSLIWNSDLGVELKSFSRYHIDVHIKTEDLWEWRFTGLYG 107

Query: 62  SPYAELQSNSWNILRHLQGSASVPWVVGGDFNALMYHSDKEGGRPCVDSDLQIFHFVLDD 121
           +P    + ++WN++R L     +PW++GG+FN +++  +K GGRP   + + +F  VL D
Sbjct: 108 NPEVSSRCSTWNLIRTLNSIEQIPWLLGGNFNEVLHLHEKRGGRPRSITQIGVFREVLTD 167

Query: 122 LALVDLGFRGPRFAWCNRQPG 142
             L DLGFRGPRF W N + G
Sbjct: 168 CNLRDLGFRGPRFTWWNGREG 188

BLAST of Lag0011850 vs. NCBI nr
Match: XP_042988712.1 (uncharacterized protein LOC122316247 [Carya illinoinensis])

HSP 1 Score: 142.9 bits (359), Expect = 2.1e-30
Identity = 63/141 (44.68%), Postives = 87/141 (61.70%), Query Frame = 0

Query: 1   MKLRLGFRNCFGVDSVGSKGDLAILWFEEVTFALNSYSCYHIDGWVN--WQDKQWRVTGF 60
           +K  LG+  CF V S G  G LA++W EE    + SYS  HID  ++    D QW+ TG 
Sbjct: 47  VKRLLGYECCFAVSSEGRSGGLALMWQEETNLNVQSYSKNHIDALIHNAEHDGQWQFTGV 106

Query: 61  YGSPYAELQSNSWNILRHLQGSASVPWVVGGDFNALMYHSDKEGGRPCVDSDLQIFHFVL 120
           YG P  EL+  +WN +R L+G+ SVPW+V GDFN ++   +K GGR   +  ++ F  +L
Sbjct: 107 YGHPDTELRQETWNTIRSLRGTVSVPWLVCGDFNEVLCWQEKRGGRNRPERQMRTFRQLL 166

Query: 121 DDLALVDLGFRGPRFAWCNRQ 140
           DD + VDLGF GP F WCN++
Sbjct: 167 DDCSFVDLGFMGPPFTWCNKR 187

BLAST of Lag0011850 vs. NCBI nr
Match: KAF5443558.1 (hypothetical protein F2P56_036105, partial [Juglans regia])

HSP 1 Score: 140.2 bits (352), Expect = 1.4e-29
Identity = 60/141 (42.55%), Postives = 88/141 (62.41%), Query Frame = 0

Query: 2   KLRLGFRNCFGVDSVGSKGDLAILWFEEVTFALNSYSCYHIDGWVNWQD-KQWRVTGFYG 61
           K RL   +CF VD VG  G L++LW  ++   + S+S +HID  +   D  +WR TG YG
Sbjct: 48  KFRLHLTHCFTVDCVGRSGGLSLLWKGDLRVRVQSFSLHHIDALIQDGDGPEWRFTGVYG 107

Query: 62  SPYAELQSNSWNILRHLQGSASVPWVVGGDFNALMYHSDKEGGRPCVDSDLQIFHFVLDD 121
           +P    +  +WN+LR L      PW+VGGDFN L++ ++K GGRP  ++ ++ F  V+ D
Sbjct: 108 NPEVVNRYLTWNLLRRLNSGVDGPWLVGGDFNELLHFNEKRGGRPRSENQMEAFRNVIFD 167

Query: 122 LALVDLGFRGPRFAWCNRQPG 142
            +L DLGFRGP++ WCN + G
Sbjct: 168 CSLRDLGFRGPKYTWCNGRAG 188

BLAST of Lag0011850 vs. NCBI nr
Match: XP_042972796.1 (uncharacterized protein LOC122304603 [Carya illinoinensis])

HSP 1 Score: 140.2 bits (352), Expect = 1.4e-29
Identity = 58/141 (41.13%), Postives = 92/141 (65.25%), Query Frame = 0

Query: 1   MKLRLGFRNCFGVDSVGSKGDLAILWFEEVTFALNSYSCYHIDGWVNWQD--KQWRVTGF 60
           +++R+GF  CF V+S G KG +A+LW  E+  ++ S+S +HID  ++  D   +W+ TG 
Sbjct: 47  IRVRVGFECCFVVNSDGRKGGVALLWRNEIKLSIKSFSLFHIDAKISGTDGGMEWKFTGL 106

Query: 61  YGSPYAELQSNSWNILRHLQGSASVPWVVGGDFNALMYHSDKEGGRPCVDSDLQIFHFVL 120
           YG    E +  +W++LR L+   ++PW+V GDFN ++   +K GGRP  +  +Q F  VL
Sbjct: 107 YGHLEIEKREETWSLLRALREEGNIPWLVCGDFNEVLSQQEKMGGRPRPEMLMQAFRSVL 166

Query: 121 DDLALVDLGFRGPRFAWCNRQ 140
           DD  L+DLGF+G ++ WCNR+
Sbjct: 167 DDCNLIDLGFKGQKYTWCNRR 187

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAF5449841.11.2e-3348.23hypothetical protein F2P56_030246 [Juglans regia][more]
XP_041001573.14.3e-3143.26uncharacterized protein LOC121247264 [Juglans microcarpa x Juglans regia][more]
XP_042988712.12.1e-3044.68uncharacterized protein LOC122316247 [Carya illinoinensis][more]
KAF5443558.11.4e-2942.55hypothetical protein F2P56_036105, partial [Juglans regia][more]
XP_042972796.11.4e-2941.13uncharacterized protein LOC122304603 [Carya illinoinensis][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036691Endonuclease/exonuclease/phosphatase superfamilyGENE3D3.60.10.10Endonuclease/exonuclease/phosphatasecoord: 2..141
e-value: 2.1E-10
score: 42.8
IPR036691Endonuclease/exonuclease/phosphatase superfamilySUPERFAMILY56219DNase I-likecoord: 5..139

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0011850.1Lag0011850.1mRNA