Lag0011725 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0011725
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr1: 31716857 .. 31717210 (-)
RNA-Seq Expression	Lag0011725
Synteny	Lag0011725

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTTTATGCGGTTCTTCAAGCTATGAGGCTTCTAGTTCGTATGAATATTAAGGCTGCGAATATCTATTCAGATTCTTTAAATGCTATTATGATGCTTAATAACGAGAAGGAGACTGAAGTGGAAGTTCACCATTGGATTCAACAAATACTTGAAATGCGCCCAGATTTTCTTTCGGTGTTTTTCAATCACATTGGAAGACTTCGAAACATTAGGGCGGATGCTTTGGCCAAAAAAGCGCTTCAGAATACACAATCTATGTTATGGCTTTCTGATTTTCCTTTCTGGCTTCAATCAATGGGACAAATGGCCCATTGTAAATGTATCATGGCTTGCTCATGCAGTTTATAA

mRNA sequence

ATGGAAGTTTATGCGGTTCTTCAAGCTATGAGGCTTCTAGTTCGTATGAATATTAAGGCTGCGAATATCTATTCAGATTCTTTAAATGCTATTATGATGCTTAATAACGAGAAGGAGACTGAAGTGGAAGTTCACCATTGGATTCAACAAATACTTGAAATGCGCCCAGATTTTCTTTCGGTGTTTTTCAATCACATTGGAAGACTTCGAAACATTAGGGCGGATGCTTTGGCCAAAAAAGCGCTTCAGAATACACAATCTATGTTATGGCTTTCTGATTTTCCTTTCTGGCTTCAATCAATGGGACAAATGGCCCATTGTAAATGTATCATGGCTTGCTCATGCAGTTTATAA

Coding sequence (CDS)

ATGGAAGTTTATGCGGTTCTTCAAGCTATGAGGCTTCTAGTTCGTATGAATATTAAGGCTGCGAATATCTATTCAGATTCTTTAAATGCTATTATGATGCTTAATAACGAGAAGGAGACTGAAGTGGAAGTTCACCATTGGATTCAACAAATACTTGAAATGCGCCCAGATTTTCTTTCGGTGTTTTTCAATCACATTGGAAGACTTCGAAACATTAGGGCGGATGCTTTGGCCAAAAAAGCGCTTCAGAATACACAATCTATGTTATGGCTTTCTGATTTTCCTTTCTGGCTTCAATCAATGGGACAAATGGCCCATTGTAAATGTATCATGGCTTGCTCATGCAGTTTATAA

Protein sequence

MEVYAVLQAMRLLVRMNIKAANIYSDSLNAIMMLNNEKETEVEVHHWIQQILEMRPDFLSVFFNHIGRLRNIRADALAKKALQNTQSMLWLSDFPFWLQSMGQMAHCKCIMACSCSL

Homology

The following BLAST results are available for this feature:

BLAST of Lag0011725 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0011725 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..84 e-value: 3.7E-14 score: 54.9
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 2..81 e-value: 7.7E-9 score: 35.4
IPR002156	Ribonuclease H domain	PROSITE	PS50879	RNASE_H	coord: 1..83 score: 13.292081
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 1..79 e-value: 1.20296E-14 score: 63.102
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0011725.1	Lag0011725.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity