Lag0011444 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0011444
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCCHC-type domain-containing protein
Locationchr1: 24862023 .. 24862792 (-)
RNA-Seq ExpressionLag0011444
SyntenyLag0011444
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTGCTAGAGTTCTTAAATTCAATCTGTAGTGCTCGTATCCTTTCAATCCATAGTTCTGGTTTCTCATGTAAATTCTTCCTATTGTCGCCATCTTGTCTGCAAATCTGTGTTGCCTTCCTTCCAACAGCTTTCGAGGACTTGATAGAAAATTGGGAGAAATTTAACCTTACGGCTGAAGAAGAGGAAACGGAAGTGGATGTTGATCGTCAAGCTGCAGTCGTTACGGGTAGATCCTTGGGCTTTAGTCTCATTGGTAAGCTCCTTGCGCCTAGGGTCATATCTGGTGAGGTAATGAGAAAGAATTTCAAGGCTGCCTGGAACATCCCAAATGGATTGACTGTCGAAAAGCTTGGACTCAATTTGTTCCTATTTACGCTGCGAACGGAGGAGGAGCAAACCAGAGTTTTACAGCAAAAACCGTGGTTGTTTGACAAGTATATTTTGATGCTATCCAAACCAATCCCCATGGTGAAGTCCCAAGCAATGGAGTTCAAAATGGTGATTTTCTGAATACATTTTTATGAACTCCCTATGGACCTTTACAACTCCTCTATGGCAGAAAGGCTCGAAAACGCGGTGGGTACGTTTGTAGACTATGACAATGGTGGTAGGAGAATGGCTGGAAGGAGAGTCTCCGTGTACGTGTTCAATTGGATATTTCAAAGCCACTTCGACAAGGCATCAAAGTAAAGCTTGACGAACCTCTGGGTAGTTGCTGGTCCCCGATTCGGTATGAAAAGCTCCCGGAATTATGCTCCTTCTGA

mRNA sequence

ATGGATTTGCTAGAGTTCTTAAATTCAATCTGTAGTGCTCGTATCCTTTCAATCCATAGTTCTGGTTTCTCATGTAAATTCTTCCTATTGTCGCCATCTTGTCTGCAAATCTGTGTTGCCTTCCTTCCAACAGCTTTCGAGGACTTGATAGAAAATTGGGAGAAATTTAACCTTACGGCTGAAGAAGAGGAAACGGAAGTGGATGTTGATCGTCAAGCTGCAGTCGTTACGGGTAGATCCTTGGGCTTTAGTCTCATTGGTAAGCTCCTTGCGCCTAGGGTCATATCTGGTGAGGTAATGAGAAAGAATTTCAAGGCTGCCTGGAACATCCCAAATGGATTGACTGTCGAAAAGCTTGGACTCAATTTGTTCCTATTTACGCTGCGAACGGAGGAGGAGCAAACCAGAGTTTTACAGCAAAAACCGTGGTTGTTTGACAAGTATATTTTGATGCTATCCAAACCAATCCCCATGGTGAAGTCCCAAGCAATGGAGTTCAAAATGGAGAATGGCTGGAAGGAGAGTCTCCGTGTACGTGTTCAATTGGATATTTCAAAGCCACTTCGACAAGGCATCAAAGTAAAGCTTGACGAACCTCTGGGTAGTTGCTGGTCCCCGATTCGGTATGAAAAGCTCCCGGAATTATGCTCCTTCTGA

Coding sequence (CDS)

ATGGATTTGCTAGAGTTCTTAAATTCAATCTGTAGTGCTCGTATCCTTTCAATCCATAGTTCTGGTTTCTCATGTAAATTCTTCCTATTGTCGCCATCTTGTCTGCAAATCTGTGTTGCCTTCCTTCCAACAGCTTTCGAGGACTTGATAGAAAATTGGGAGAAATTTAACCTTACGGCTGAAGAAGAGGAAACGGAAGTGGATGTTGATCGTCAAGCTGCAGTCGTTACGGGTAGATCCTTGGGCTTTAGTCTCATTGGTAAGCTCCTTGCGCCTAGGGTCATATCTGGTGAGGTAATGAGAAAGAATTTCAAGGCTGCCTGGAACATCCCAAATGGATTGACTGTCGAAAAGCTTGGACTCAATTTGTTCCTATTTACGCTGCGAACGGAGGAGGAGCAAACCAGAGTTTTACAGCAAAAACCGTGGTTGTTTGACAAGTATATTTTGATGCTATCCAAACCAATCCCCATGGTGAAGTCCCAAGCAATGGAGTTCAAAATGGAGAATGGCTGGAAGGAGAGTCTCCGTGTACGTGTTCAATTGGATATTTCAAAGCCACTTCGACAAGGCATCAAAGTAAAGCTTGACGAACCTCTGGGTAGTTGCTGGTCCCCGATTCGGTATGAAAAGCTCCCGGAATTATGCTCCTTCTGA

Protein sequence

MDLLEFLNSICSARILSIHSSGFSCKFFLLSPSCLQICVAFLPTAFEDLIENWEKFNLTAEEEETEVDVDRQAAVVTGRSLGFSLIGKLLAPRVISGEVMRKNFKAAWNIPNGLTVEKLGLNLFLFTLRTEEEQTRVLQQKPWLFDKYILMLSKPIPMVKSQAMEFKMENGWKESLRVRVQLDISKPLRQGIKVKLDEPLGSCWSPIRYEKLPELCSF
Homology
BLAST of Lag0011444 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 156.0 bits (393), Expect = 3.7e-34
Identity = 81/210 (38.57%), Postives = 116/210 (55.24%), Query Frame = 0

Query: 47  EDLIENWEKFNLTAEEEETEVDVDRQAAVVTGRSLGFSLIGKLLAPRVISGEVMRKNFKA 106
           E+L+ +W+KF LT+EE+E  +DVD  A  +  + L +SL+GKLLA R+IS +V+ +    
Sbjct: 4   ENLLADWQKFKLTSEEDEIAMDVDVDAVKMAEQGLAYSLVGKLLAKRIISADVLSRVLLL 63

Query: 107 AWNIPNGLTVEKLGLNLFLFTLRTEEEQTRVLQQKPWLFDKYILMLSKPIPMVKSQAMEF 166
           AW + + LTVE +G NLFLF    E +  RV++  PW FDK +++L KP        +EF
Sbjct: 64  AWKVEHQLTVESIGKNLFLFHFCRECDMNRVMKTGPWFFDKALIVLQKPCSSKNISELEF 123

Query: 167 KM------------------------------------ENG--WKESLRVRVQLDISKPL 219
                                                 E G  W  SLR+RV +DI+KPL
Sbjct: 124 NRVAFWIHLFDLPMSWLNKTMAIRLGNAIGNFVDVDCNEKGFSWGASLRIRVLIDITKPL 183

BLAST of Lag0011444 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 144.8 bits (364), Expect = 8.6e-31
Identity = 74/208 (35.58%), Postives = 109/208 (52.40%), Query Frame = 0

Query: 48  DLIENWEKFNLTAEEEETEVDVDRQAAVVTGRSLGFSLIGKLLAPRVISGEVMRKNFKAA 107
           DL+E W+ F LT+EEEET +DVD  A   TG  L   L+GKL   R I+  VM+   + A
Sbjct: 5   DLLEEWKNFKLTSEEEETAIDVDASAPATTGSRLEQILVGKLFIKRPITCPVMKNTMRTA 64

Query: 108 WNIP-NGLTVEKLGLNLFLFTLRTEEEQTRVLQQKPWLFDKYILMLSKPIPMVKSQAMEF 167
           W +  N   V+ LG NLFLF+     ++ ++ +  PW FD+ +++++KP+ ++    ++F
Sbjct: 65  WKLENNAFEVQSLGYNLFLFSFARALDRNKIYKSGPWTFDRTLVLINKPVALIPPSELDF 124

Query: 168 --------------------------------------KMENGWKESLRVRVQLDISKPL 217
                                                  +   W  +LRVRV LDISKPL
Sbjct: 125 TKLPIWVRFFDLPLGCITRDMAIRLGNALGGFEEADCDDLNPDWGSNLRVRVMLDISKPL 184

BLAST of Lag0011444 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia])

HSP 1 Score: 134.8 bits (338), Expect = 8.9e-28
Identity = 71/209 (33.97%), Postives = 110/209 (52.63%), Query Frame = 0

Query: 45  AFEDLIENWEKFNLTAEEEETEVDVDRQAAVVTGRSLGFSLIGKLLAPRVISGEVMRKNF 104
           A  +L+E W+ F LT+EE++  VD+D  A   TG+ L  SLI KLL+ R IS  V++   
Sbjct: 2   AASNLLEEWKNFKLTSEEDKIAVDIDSSALEGTGKCLELSLICKLLSKRSISCTVLKNTL 61

Query: 105 KAAWNIP-NGLTVEKLGLNLFLFTLRTEEEQTRVLQQKPWLFDKYILMLSKPIPMVKSQA 164
           K AW +     +V+ +G N+FLF      ++ R+L+  PW FD+ ++++  P+ + K   
Sbjct: 62  KIAWKLDCKAFSVDIIGFNIFLFNFNRSSDRNRILRMGPWTFDRALIIIDNPVSLTKPLD 121

Query: 165 MEFK---------------------------------MENG-----WKESLRVRVQLDIS 215
           M+F+                                 +E+      W   LRVRV+ D+ 
Sbjct: 122 MDFRNVSLWVHFFDLSLACMNKTMATRLGNAIGLFEDVESNANNFCWGSCLRVRVRFDVM 181

BLAST of Lag0011444 vs. NCBI nr
Match: XP_022149484.1 (uncharacterized protein LOC111017902 [Momordica charantia])

HSP 1 Score: 106.7 bits (265), Expect = 2.6e-19
Identity = 62/208 (29.81%), Postives = 101/208 (48.56%), Query Frame = 0

Query: 47  EDLIENWEKFNLTAEEEETEVDVDRQAAVVTGRSLGFSLIGKLLAPRVISGEVMRKNFKA 106
           +++ + WE F  T +E ET V +DR   ++T  ++   ++ KL   + IS E +R   K+
Sbjct: 2   DEITDLWEHFKSTNDENET-VTIDRGKPILTADNVKLCVVAKLHTSKRISAEAIRSVMKS 61

Query: 107 AWNIPNGLTVEKLGLNLFLFTLRTEEEQTRVLQQKPWLFDKYILMLSKPIPMVKSQAMEF 166
            W + N    E LG+N+++   ++  E++RVL   PW F+K +L+L+ P    +   M F
Sbjct: 62  VWRVHNSTRFEPLGMNIYVILFKSLSEKSRVLSSGPWTFNKSLLVLTSPTATNQPLDMNF 121

Query: 167 KM-------------------------------------ENGWK-ESLRVRVQLDISKPL 217
                                                   +GW    +RVRV++D+SKPL
Sbjct: 122 NFCAFWIQIHNIPFECISTEMANILGAKLGDVEEIEGDGADGWAGPFIRVRVKIDVSKPL 181

BLAST of Lag0011444 vs. NCBI nr
Match: TXG51459.1 (hypothetical protein EZV62_023983 [Acer yangbiense])

HSP 1 Score: 95.9 bits (237), Expect = 4.6e-16
Identity = 44/132 (33.33%), Postives = 81/132 (61.36%), Query Frame = 0

Query: 85  LIGKLLAPRVISGEVMRKNFKAAWNIPNGLTVEKLGLNLFLFTLRTEEEQTRVLQQKPWL 144
           L+GK+L+ + ++ E  +   +  W+    + +E +GLN+F+F    + E+ R+ Q+ PW 
Sbjct: 41  LVGKILSSKRVNREAFKNLIEQLWSPFGSVEIESMGLNIFMFHFNNQVERNRIWQRGPWY 100

Query: 145 FDKYILMLSKPIPMVKSQAMEFKMENGWKESLRVRVQLDISKPLRQGIKVKLDEPLGSCW 204
           FDK +++L KP   V     E K  + W + ++V+VQ+DISKPL++ +++KLD+      
Sbjct: 101 FDKSLIVLEKPEGCVIDIPTESK--DCWGKFMKVKVQIDISKPLKRWLRLKLDKSNNIVM 160

Query: 205 SPIRYEKLPELC 217
             ++YE+LP+ C
Sbjct: 161 VSLKYERLPKFC 170

BLAST of Lag0011444 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.8e-34
Identity = 81/210 (38.57%), Postives = 116/210 (55.24%), Query Frame = 0

Query: 47  EDLIENWEKFNLTAEEEETEVDVDRQAAVVTGRSLGFSLIGKLLAPRVISGEVMRKNFKA 106
           E+L+ +W+KF LT+EE+E  +DVD  A  +  + L +SL+GKLLA R+IS +V+ +    
Sbjct: 4   ENLLADWQKFKLTSEEDEIAMDVDVDAVKMAEQGLAYSLVGKLLAKRIISADVLSRVLLL 63

Query: 107 AWNIPNGLTVEKLGLNLFLFTLRTEEEQTRVLQQKPWLFDKYILMLSKPIPMVKSQAMEF 166
           AW + + LTVE +G NLFLF    E +  RV++  PW FDK +++L KP        +EF
Sbjct: 64  AWKVEHQLTVESIGKNLFLFHFCRECDMNRVMKTGPWFFDKALIVLQKPCSSKNISELEF 123

Query: 167 KM------------------------------------ENG--WKESLRVRVQLDISKPL 219
                                                 E G  W  SLR+RV +DI+KPL
Sbjct: 124 NRVAFWIHLFDLPMSWLNKTMAIRLGNAIGNFVDVDCNEKGFSWGASLRIRVLIDITKPL 183

BLAST of Lag0011444 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 4.2e-31
Identity = 74/208 (35.58%), Postives = 109/208 (52.40%), Query Frame = 0

Query: 48  DLIENWEKFNLTAEEEETEVDVDRQAAVVTGRSLGFSLIGKLLAPRVISGEVMRKNFKAA 107
           DL+E W+ F LT+EEEET +DVD  A   TG  L   L+GKL   R I+  VM+   + A
Sbjct: 5   DLLEEWKNFKLTSEEEETAIDVDASAPATTGSRLEQILVGKLFIKRPITCPVMKNTMRTA 64

Query: 108 WNIP-NGLTVEKLGLNLFLFTLRTEEEQTRVLQQKPWLFDKYILMLSKPIPMVKSQAMEF 167
           W +  N   V+ LG NLFLF+     ++ ++ +  PW FD+ +++++KP+ ++    ++F
Sbjct: 65  WKLENNAFEVQSLGYNLFLFSFARALDRNKIYKSGPWTFDRTLVLINKPVALIPPSELDF 124

Query: 168 --------------------------------------KMENGWKESLRVRVQLDISKPL 217
                                                  +   W  +LRVRV LDISKPL
Sbjct: 125 TKLPIWVRFFDLPLGCITRDMAIRLGNALGGFEEADCDDLNPDWGSNLRVRVMLDISKPL 184

BLAST of Lag0011444 vs. ExPASy TrEMBL
Match: A0A6J1BSZ1 (uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005481 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 4.3e-28
Identity = 71/209 (33.97%), Postives = 110/209 (52.63%), Query Frame = 0

Query: 45  AFEDLIENWEKFNLTAEEEETEVDVDRQAAVVTGRSLGFSLIGKLLAPRVISGEVMRKNF 104
           A  +L+E W+ F LT+EE++  VD+D  A   TG+ L  SLI KLL+ R IS  V++   
Sbjct: 2   AASNLLEEWKNFKLTSEEDKIAVDIDSSALEGTGKCLELSLICKLLSKRSISCTVLKNTL 61

Query: 105 KAAWNIP-NGLTVEKLGLNLFLFTLRTEEEQTRVLQQKPWLFDKYILMLSKPIPMVKSQA 164
           K AW +     +V+ +G N+FLF      ++ R+L+  PW FD+ ++++  P+ + K   
Sbjct: 62  KIAWKLDCKAFSVDIIGFNIFLFNFNRSSDRNRILRMGPWTFDRALIIIDNPVSLTKPLD 121

Query: 165 MEFK---------------------------------MENG-----WKESLRVRVQLDIS 215
           M+F+                                 +E+      W   LRVRV+ D+ 
Sbjct: 122 MDFRNVSLWVHFFDLSLACMNKTMATRLGNAIGLFEDVESNANNFCWGSCLRVRVRFDVM 181

BLAST of Lag0011444 vs. ExPASy TrEMBL
Match: A0A2N9IG44 (CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50952 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 5.6e-20
Identity = 62/179 (34.64%), Postives = 95/179 (53.07%), Query Frame = 0

Query: 45  AFEDLIENWEKFNLTAEEE---ETEVDVDRQAAVVTGRSLGFSLIGKLLAPRVISGEVMR 104
           A + L+E+W KF+LT  E    + E DV  ++  +  +     L+GKL+  ++ S EV++
Sbjct: 136 ASDALLEDWRKFSLTETEAPSFKVEEDVMGESRTIGSK----CLLGKLITDKLFSKEVLK 195

Query: 105 KNFKAAWNIPNGLTVEKLGLNLFLFTLRTEEEQTRVLQQKPWLFDKYILMLSK---PIPM 164
                 W    G+T   +  NLF F    E E+ RVL   PWLFD Y+L L +    IP 
Sbjct: 196 TTMLRLWGASRGITTTNISDNLFAFQFPNEYERMRVLNGAPWLFDNYLLALQEFDGSIPA 255

Query: 165 VKSQAMEFKMEN-GWKESLRVRVQLDISKPLRQGIKVKLDEPLGSCWSPIRYEKLPELC 217
           +K + ++      GW  +LRVR+QLD ++P+ +G  +     LG  W   RYE+LP +C
Sbjct: 256 IKVKEVDAPENGIGWGSALRVRLQLDFTRPIPRGRLISFSS-LGQMWVSFRYERLPWIC 309

BLAST of Lag0011444 vs. ExPASy TrEMBL
Match: A0A6J1D765 (uncharacterized protein LOC111017902 OS=Momordica charantia OX=3673 GN=LOC111017902 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.3e-19
Identity = 62/208 (29.81%), Postives = 101/208 (48.56%), Query Frame = 0

Query: 47  EDLIENWEKFNLTAEEEETEVDVDRQAAVVTGRSLGFSLIGKLLAPRVISGEVMRKNFKA 106
           +++ + WE F  T +E ET V +DR   ++T  ++   ++ KL   + IS E +R   K+
Sbjct: 2   DEITDLWEHFKSTNDENET-VTIDRGKPILTADNVKLCVVAKLHTSKRISAEAIRSVMKS 61

Query: 107 AWNIPNGLTVEKLGLNLFLFTLRTEEEQTRVLQQKPWLFDKYILMLSKPIPMVKSQAMEF 166
            W + N    E LG+N+++   ++  E++RVL   PW F+K +L+L+ P    +   M F
Sbjct: 62  VWRVHNSTRFEPLGMNIYVILFKSLSEKSRVLSSGPWTFNKSLLVLTSPTATNQPLDMNF 121

Query: 167 KM-------------------------------------ENGWK-ESLRVRVQLDISKPL 217
                                                   +GW    +RVRV++D+SKPL
Sbjct: 122 NFCAFWIQIHNIPFECISTEMANILGAKLGDVEEIEGDGADGWAGPFIRVRVKIDVSKPL 181

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022156185.13.7e-3438.57uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha... [more]
XP_022158377.18.6e-3135.58uncharacterized protein LOC111024874 [Momordica charantia][more]
XP_022132681.18.9e-2833.97uncharacterized protein LOC111005481 [Momordica charantia][more]
XP_022149484.12.6e-1929.81uncharacterized protein LOC111017902 [Momordica charantia][more]
TXG51459.14.6e-1633.33hypothetical protein EZV62_023983 [Acer yangbiense][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DU551.8e-3438.57uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1DX304.2e-3135.58uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1BSZ14.3e-2833.97uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A2N9IG445.6e-2034.64CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS5095... [more]
A0A6J1D7651.3e-1929.81uncharacterized protein LOC111017902 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025558Domain of unknown function DUF4283PFAMPF14111DUF4283coord: 81..169
e-value: 3.8E-11
score: 42.7

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0011444.1Lag0011444.1mRNA