Lag0010169 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0010169
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	cytochrome-c oxidases;electron carriers
Location	chr9: 45143338 .. 45144165 (-)
RNA-Seq Expression	Lag0010169
Synteny	Lag0010169

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAGTGGGTCTGGGTCCATTGATTCCATGTTTGTTGTACAGAACAAATATTCTAGCCGTGAGCAATATATCATGCTTGTTGTCCATTTTATCTATGGATCTTTGGCATTGATTCCATGTTTGTTGTACAGAACAAATATTCTAGTGGGTCTTGGGTAAAATTTGGAAATCAGTGTCATCTGCAGGCGATCGAGTATTTATATTATTTTGCTTTCTAGAGCAGTATTAATTTTCTAGCCGTGAGCAATATATCATGCTTTTGGAATTTTATTGTCGGATACTAATTTTACTTACTGTTAGCGTCTGTGCTTCTGAATGGATAGGTTAGACACTTTGCAGAGTCCATTGATTCCATGTTTGTTGTACAGAACAAATGAGACATGTATCACGCAGTTGCAAAAATTACAAATTCACGTATTTTCTATATGAGAATGGATTTGGAGTTGGAAGATGTTGGAAGTAGCTTTTATGAAATTTCATCAAATTTCTACTTGAATTATTATGCAGGATGACTGAACAACCATTTAGGCCTCGTGAGCAACTTGTTGAAAGGCAAAAATATTTCCAGAGCATCCACAAACACACATATCTTAAAGGGCCAATGGATAAGGTCACCTCTGTTGCCATTCCAATTGCTCTGGCAGCTTCATCGTTGTATCTTATAGTAAGTTTATTTCTCTCTAGTGCAGTGGAAGATTTTTATCCCCCATTTCGAAGAACATGAATTTAGTTGTCTAGGATTACGTATAATGTTGATCTTACTCCCATTTCTTGCAGGGACGGGGAATTTATAACATGTCACATGGGATCGGGAAGAAAGAATGA

mRNA sequence

ATGAGTAGTGGGTCTGGGTCCATTGATTCCATGTTTGTTGTACAGAACAAATATTCTAGCCGTGAGCAATATATCATGCTTGTTGTCCATTTTATCTATGGATCTTTGGCATTGATTCCATGTTTGTTGTACAGAACAAATATTCTAGTGGGTCTTGGGATGACTGAACAACCATTTAGGCCTCGTGAGCAACTTGTTGAAAGGCAAAAATATTTCCAGAGCATCCACAAACACACATATCTTAAAGGGCCAATGGATAAGGTCACCTCTGTTGCCATTCCAATTGCTCTGGCAGCTTCATCGTTGTATCTTATAGGACGGGGAATTTATAACATGTCACATGGGATCGGGAAGAAAGAATGA

Coding sequence (CDS)

ATGAGTAGTGGGTCTGGGTCCATTGATTCCATGTTTGTTGTACAGAACAAATATTCTAGCCGTGAGCAATATATCATGCTTGTTGTCCATTTTATCTATGGATCTTTGGCATTGATTCCATGTTTGTTGTACAGAACAAATATTCTAGTGGGTCTTGGGATGACTGAACAACCATTTAGGCCTCGTGAGCAACTTGTTGAAAGGCAAAAATATTTCCAGAGCATCCACAAACACACATATCTTAAAGGGCCAATGGATAAGGTCACCTCTGTTGCCATTCCAATTGCTCTGGCAGCTTCATCGTTGTATCTTATAGGACGGGGAATTTATAACATGTCACATGGGATCGGGAAGAAAGAATGA

Protein sequence

MSSGSGSIDSMFVVQNKYSSREQYIMLVVHFIYGSLALIPCLLYRTNILVGLGMTEQPFRPREQLVERQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYNMSHGIGKKE

Homology

[Close]

BLAST of Lag0010169 vs. NCBI nr
Match: KAG6606001.1 (hypothetical protein SDJN03_03318, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137.5 bits (345), Expect = 7.6e-29
Identity = 65/69 (94.20%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 52  LGMTEQPFRPREQLVERQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYN 111
           L MTEQPFRPRE+L+ERQKYFQSIHKHTYLKGPMDK+TSVAIPIALAASSLYLIGRGIYN
Sbjct: 53  LNMTEQPFRPREKLIERQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYN 112

Query: 112 MSHGIGKKE 121
           MSHGIGKKE
Sbjct: 113 MSHGIGKKE 121

[Close]

BLAST of Lag0010169 vs. NCBI nr
Match: XP_022957674.1 (uncharacterized protein LOC111459140 isoform X1 [Cucurbita moschata] >XP_022996284.1 uncharacterized protein LOC111491558 isoform X1 [Cucurbita maxima])

HSP 1 Score: 136.3 bits (342), Expect = 1.7e-28
Identity = 64/69 (92.75%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 52  LGMTEQPFRPREQLVERQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYN 111
           + MTEQPFRPRE+L+ERQKYFQSIHKHTYLKGPMDK+TSVAIPIALAASSLYLIGRGIYN
Sbjct: 1   MDMTEQPFRPREKLIERQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYN 60

Query: 112 MSHGIGKKE 121
           MSHGIGKKE
Sbjct: 61  MSHGIGKKE 69

[Close]

BLAST of Lag0010169 vs. NCBI nr
Match: XP_022957675.1 (uncharacterized protein LOC111459140 isoform X2 [Cucurbita moschata] >XP_022996285.1 uncharacterized protein LOC111491558 isoform X2 [Cucurbita maxima] >KAG7035951.1 hypothetical protein SDJN02_02751, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 136.0 bits (341), Expect = 2.2e-28
Identity = 64/67 (95.52%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 54  MTEQPFRPREQLVERQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYNMS 113
           MTEQPFRPRE+L+ERQKYFQSIHKHTYLKGPMDK+TSVAIPIALAASSLYLIGRGIYNMS
Sbjct: 1   MTEQPFRPREKLIERQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMS 60

Query: 114 HGIGKKE 121
           HGIGKKE
Sbjct: 61  HGIGKKE 67

[Close]

BLAST of Lag0010169 vs. NCBI nr
Match: XP_023532621.1 (uncharacterized protein LOC111794729 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 135.2 bits (339), Expect = 3.8e-28
Identity = 63/69 (91.30%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 52  LGMTEQPFRPREQLVERQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYN 111
           + MTEQPFRPRE+L+E+QKYFQSIHKHTYLKGPMDK+TSVAIPIALAASSLYLIGRGIYN
Sbjct: 1   MDMTEQPFRPREKLIEKQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYN 60

Query: 112 MSHGIGKKE 121
           MSHGIGKKE
Sbjct: 61  MSHGIGKKE 69

[Close]

BLAST of Lag0010169 vs. NCBI nr
Match: XP_023532622.1 (uncharacterized protein LOC111794729 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 134.8 bits (338), Expect = 4.9e-28
Identity = 63/67 (94.03%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 54  MTEQPFRPREQLVERQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYNMS 113
           MTEQPFRPRE+L+E+QKYFQSIHKHTYLKGPMDK+TSVAIPIALAASSLYLIGRGIYNMS
Sbjct: 1   MTEQPFRPREKLIEKQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMS 60

Query: 114 HGIGKKE 121
           HGIGKKE
Sbjct: 61  HGIGKKE 67

The following BLAST results are available for this feature:

BLAST of Lag0010169 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6606001.1	7.6e-29	94.20	hypothetical protein SDJN03_03318, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022957674.1	1.7e-28	92.75	uncharacterized protein LOC111459140 isoform X1 [Cucurbita moschata] >XP_0229962...	[more]
XP_022957675.1	2.2e-28	95.52	uncharacterized protein LOC111459140 isoform X2 [Cucurbita moschata] >XP_0229962...	[more]
XP_023532621.1	3.8e-28	91.30	uncharacterized protein LOC111794729 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023532622.1	4.9e-28	94.03	uncharacterized protein LOC111794729 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0010169 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039297	Cytochrome c oxidase subunit VII	PFAM	PF02238	COX7a	coord: 65..115 e-value: 6.4E-15 score: 55.3
IPR039296	Predicted cytochrome c oxidase subunit VII	PANTHER	PTHR35308	CYTOCHROME C OXIDASE SUBUNIT 7	coord: 38..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0010169.1	Lag0010169.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane