Lag0009849 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0009849
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionLOB domain-containing protein
Locationchr9: 42835271 .. 42836228 (+)
RNA-Seq ExpressionLag0009849
SyntenyLag0009849
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGCTGGTTCATCGCCATGTGCGTCCTGCAAGTTGCTGCGGCGGCGGTGCGCCGAGAGCTGCATTTTTGCTCCTTATTTCCCTCCTAATGATCCTCAGAGGTTCGCCATTGTTCATAAGATCTTCGGCGCTAGCAATGTCAGCAAAATGTTGCAGGTCAGCTTTCTTCTTTTCTATGCCTTTTTATCCTTCTTTTTAAATTAGTTTCGGGGCCACGTGTGAGGCGGAGAATTTAAGATTTTGAGCGGGTGACGTTTAGTTTAGACGTGTAAGGACTCGATCGTGCTTAGGTTGGCTTCTGTCTCCCTGGCTTGTGAGGTGTAGTCTTCTTGATTTAAGAGAATTGTTTAAAACGGTGTCGAACAGTAGTACGTTAGGGTTTTAGTCACGTTGTGACAACTAGTTCAATCCAAAAGCTATGGTAGATTTAATTATATCAACTATTAGACTCTCTTTTATCGGTAGTGAAGTAATTTCTTCCGACTTTGATTTAGGTTAAAAAATCATACGATTTTATGATTTTCTTTCTGAATTTTAAACATTTACAAACAACAACATAGAATAAGGTCTTATACGAAAGTTTCTGGCTCCTTCTCTTCTCTGATGATAGAATGTGATTAATCTTGTGCAGGAGCTACCGGTTGATAAGAGAGCAGATGCAGTGAACAGTATAGTATACGAAGCGAGTGCGAGAATGCGAGATCCAGTCTACGGCTGTGTTGGGACGATCTCATTCCTACAAAACGAAGTGTCCCGATTGGAAATGCAGCTAGCGAAAGCGCAGGCAGAGATACTAAGCTTTCAGATGCAACAACAGGTAGCTCCGACCACATTTCCGACGATGGAGATGGACCTATATGATCAAGATCCATTTTTTTTCGCACATCCTGCCGATTCTTCTCATTCCATCAATAGTTTTCAAGAAGTTGAAGATTATTGCTCTCTATGGACCTAA

mRNA sequence

ATGGGAGCTGGTTCATCGCCATGTGCGTCCTGCAAGTTGCTGCGGCGGCGGTGCGCCGAGAGCTGCATTTTTGCTCCTTATTTCCCTCCTAATGATCCTCAGAGGTTCGCCATTGTTCATAAGATCTTCGGCGCTAGCAATGTCAGCAAAATGTTGCAGGAGCTACCGGTTGATAAGAGAGCAGATGCAGTGAACAGTATAGTATACGAAGCGAGTGCGAGAATGCGAGATCCAGTCTACGGCTGTGTTGGGACGATCTCATTCCTACAAAACGAAGTGTCCCGATTGGAAATGCAGCTAGCGAAAGCGCAGGCAGAGATACTAAGCTTTCAGATGCAACAACAGGTAGCTCCGACCACATTTCCGACGATGGAGATGGACCTATATGATCAAGATCCATTTTTTTTCGCACATCCTGCCGATTCTTCTCATTCCATCAATAGTTTTCAAGAAGTTGAAGATTATTGCTCTCTATGGACCTAA

Coding sequence (CDS)

ATGGGAGCTGGTTCATCGCCATGTGCGTCCTGCAAGTTGCTGCGGCGGCGGTGCGCCGAGAGCTGCATTTTTGCTCCTTATTTCCCTCCTAATGATCCTCAGAGGTTCGCCATTGTTCATAAGATCTTCGGCGCTAGCAATGTCAGCAAAATGTTGCAGGAGCTACCGGTTGATAAGAGAGCAGATGCAGTGAACAGTATAGTATACGAAGCGAGTGCGAGAATGCGAGATCCAGTCTACGGCTGTGTTGGGACGATCTCATTCCTACAAAACGAAGTGTCCCGATTGGAAATGCAGCTAGCGAAAGCGCAGGCAGAGATACTAAGCTTTCAGATGCAACAACAGGTAGCTCCGACCACATTTCCGACGATGGAGATGGACCTATATGATCAAGATCCATTTTTTTTCGCACATCCTGCCGATTCTTCTCATTCCATCAATAGTTTTCAAGAAGTTGAAGATTATTGCTCTCTATGGACCTAA

Protein sequence

MGAGSSPCASCKLLRRRCAESCIFAPYFPPNDPQRFAIVHKIFGASNVSKMLQELPVDKRADAVNSIVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLAKAQAEILSFQMQQQVAPTTFPTMEMDLYDQDPFFFAHPADSSHSINSFQEVEDYCSLWT
Homology
BLAST of Lag0009849 vs. NCBI nr
Match: KAG6605396.1 (LOB domain-containing protein 12, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035343.1 LOB domain-containing protein 12, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 255.4 bits (651), Expect = 3.3e-64
Identity = 125/160 (78.12%), Postives = 142/160 (88.75%), Query Frame = 0

Query: 1   MGAGSSPCASCKLLRRRCAESCIFAPYFPPNDPQRFAIVHKIFGASNVSKMLQELPVDKR 60
           MGAGSSPCASCKLLRRRCA+ CIFAPYFPPNDP +FAIVHKIFGASNVSKMLQELP+D+R
Sbjct: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPNDPYKFAIVHKIFGASNVSKMLQELPLDQR 60

Query: 61  ADAVNSIVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLAKAQAEILSFQMQQQVAPTT 120
            DAVNS+VYEASARMRDPVYGCVG I+FLQN+VSRLEMQLA AQAEILSFQMQQQ AP +
Sbjct: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPAS 120

Query: 121 FPTMEMDLYDQDPFFFAHPADSSHSINSFQEVEDYCSLWT 161
           FP  +M+ YDQ+  F ++ ADS +S++   EVEDYCSLW+
Sbjct: 121 FPMTQMNQYDQNLVFLSN-ADSFNSVDGSPEVEDYCSLWS 159

BLAST of Lag0009849 vs. NCBI nr
Match: XP_022947802.1 (LOB domain-containing protein 12-like [Cucurbita moschata])

HSP 1 Score: 253.8 bits (647), Expect = 9.7e-64
Identity = 124/160 (77.50%), Postives = 142/160 (88.75%), Query Frame = 0

Query: 1   MGAGSSPCASCKLLRRRCAESCIFAPYFPPNDPQRFAIVHKIFGASNVSKMLQELPVDKR 60
           MGAGSSPCASCKLLRRRCA+ CIFAPYFPP+DP +FAIVHKIFGASNVSKMLQELP+D+R
Sbjct: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKIFGASNVSKMLQELPLDQR 60

Query: 61  ADAVNSIVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLAKAQAEILSFQMQQQVAPTT 120
            DAVNS+VYEASARMRDPVYGCVG I+FLQN+VSRLEMQLA AQAEILSFQMQQQ AP +
Sbjct: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPAS 120

Query: 121 FPTMEMDLYDQDPFFFAHPADSSHSINSFQEVEDYCSLWT 161
           FP  +M+ YDQ+  F ++ ADS +S++   EVEDYCSLW+
Sbjct: 121 FPMTQMNQYDQNLVFLSN-ADSFNSVDGSPEVEDYCSLWS 159

BLAST of Lag0009849 vs. NCBI nr
Match: XP_023533075.1 (LOB domain-containing protein 12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 253.4 bits (646), Expect = 1.3e-63
Identity = 124/160 (77.50%), Postives = 142/160 (88.75%), Query Frame = 0

Query: 1   MGAGSSPCASCKLLRRRCAESCIFAPYFPPNDPQRFAIVHKIFGASNVSKMLQELPVDKR 60
           MGAGSSPCASCKLLRRRCA+ CIFAPYFPP+DP +FAIVHKIFGASNVSKMLQELP+D+R
Sbjct: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPYKFAIVHKIFGASNVSKMLQELPLDQR 60

Query: 61  ADAVNSIVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLAKAQAEILSFQMQQQVAPTT 120
            DAVNS+VYEASARMRDPVYGCVG I+FLQN+VSRLEMQLA AQAEILSFQMQQQ AP +
Sbjct: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPAS 120

Query: 121 FPTMEMDLYDQDPFFFAHPADSSHSINSFQEVEDYCSLWT 161
           FP  +M+ YDQ+  F ++ ADS +S++   EVEDYCSLW+
Sbjct: 121 FPMTQMNQYDQNLVFLSN-ADSFNSVDGSPEVEDYCSLWS 159

BLAST of Lag0009849 vs. NCBI nr
Match: XP_023006803.1 (LOB domain-containing protein 12-like [Cucurbita maxima])

HSP 1 Score: 250.4 bits (638), Expect = 1.1e-62
Identity = 123/160 (76.88%), Postives = 141/160 (88.12%), Query Frame = 0

Query: 1   MGAGSSPCASCKLLRRRCAESCIFAPYFPPNDPQRFAIVHKIFGASNVSKMLQELPVDKR 60
           MGAGSSPCASCKLLRRRCA+ CIFAPYFPP+DP +FAIVHKIFGASNVSKMLQELP+D+R
Sbjct: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPYKFAIVHKIFGASNVSKMLQELPLDQR 60

Query: 61  ADAVNSIVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLAKAQAEILSFQMQQQVAPTT 120
            DAVNS+VYEASARMRDPVYGCVG I+FLQN+VSRLEMQLA AQAEILSFQMQQQ A  +
Sbjct: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAASAS 120

Query: 121 FPTMEMDLYDQDPFFFAHPADSSHSINSFQEVEDYCSLWT 161
           FP  +M+ YDQ+  F ++ ADS +S++   EVEDYCSLW+
Sbjct: 121 FPMTQMNQYDQNLVFLSN-ADSFNSVDGSPEVEDYCSLWS 159

BLAST of Lag0009849 vs. NCBI nr
Match: XP_008463841.1 (PREDICTED: LOB domain-containing protein 12-like [Cucumis melo])

HSP 1 Score: 232.3 bits (591), Expect = 3.0e-57
Identity = 116/162 (71.60%), Postives = 137/162 (84.57%), Query Frame = 0

Query: 1   MGAGSSPCASCKLLRRRCAESCIFAPYFPPNDPQRFAIVHKIFGASNVSKMLQELPVDKR 60
           MG GSSPCASCKLLRRRCA+ CIFAPYFPP DP +FAIVHKIFGASNVSKMLQE+P+D+R
Sbjct: 1   MGVGSSPCASCKLLRRRCAKDCIFAPYFPPEDPLKFAIVHKIFGASNVSKMLQEVPIDQR 60

Query: 61  ADAVNSIVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLAKAQAEILSFQMQQQVAPTT 120
           ADAV+S+VYEASARM+DPVYGCVGTI+FLQNEVSRLE+QL  AQAEIL+ QM+QQ   TT
Sbjct: 61  ADAVSSMVYEASARMQDPVYGCVGTIAFLQNEVSRLEIQLGAAQAEILTLQMRQQETSTT 120

Query: 121 FP--TMEMDLYDQDPFFFAHPADSSHSINSFQEVEDYCSLWT 161
           FP  T +MD  +Q+   F++  DSS+S++ FQ  EDY  +WT
Sbjct: 121 FPTTTTQMDQDEQNLMIFSN-TDSSNSLHIFQATEDYYHMWT 161

BLAST of Lag0009849 vs. ExPASy Swiss-Prot
Match: Q8LBW3 (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 192.6 bits (488), Expect = 3.5e-48
Identity = 96/131 (73.28%), Postives = 112/131 (85.50%), Query Frame = 0

Query: 2   GAGSSPCASCKLLRRRCAESCIFAPYFPPNDPQRFAIVHKIFGASNVSKMLQELPVDKRA 61
           G GSSPCASCKLLRRRCA+ CIFAPYFPP+DP +FAIVHK+FGASNVSKMLQELPV +RA
Sbjct: 3   GPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 62

Query: 62  DAVNSIVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLAKAQAEILSFQMQQQVAPTTF 121
           DAVNS+V+EA+AR+RDPVYGCVG IS+LQN+VS+L+MQLA AQAEIL  QMQ +  PT  
Sbjct: 63  DAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNE--PTLQ 122

Query: 122 PTMEMDLYDQD 133
              ++   DQD
Sbjct: 123 SHHQVLELDQD 131

BLAST of Lag0009849 vs. ExPASy Swiss-Prot
Match: Q9SHE9 (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.1e-38
Identity = 74/118 (62.71%), Postives = 99/118 (83.90%), Query Frame = 0

Query: 5   SSPCASCKLLRRRCAESCIFAPYFPPNDPQRFAIVHKIFGASNVSKMLQELPVDKRADAV 64
           +SPCA+CKLLRRRCA+ C+F+PYFP ++PQ+FA VH++FGASNV+KMLQELP+ +R DAV
Sbjct: 11  ASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAV 70

Query: 65  NSIVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLAKAQAEILSFQMQQQVAPTTFP 123
           +S+VYEA+AR+RDPVYGCVG IS LQ ++  L+ QLA AQAE++  +++Q    T FP
Sbjct: 71  SSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQS---TNFP 125

BLAST of Lag0009849 vs. ExPASy Swiss-Prot
Match: Q9SK08 (LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 SV=2)

HSP 1 Score: 158.3 bits (399), Expect = 7.2e-38
Identity = 70/109 (64.22%), Postives = 86/109 (78.90%), Query Frame = 0

Query: 6   SPCASCKLLRRRCAESCIFAPYFPPNDPQRFAIVHKIFGASNVSKMLQELPVDKRADAVN 65
           SPCA+CK+LRRRCA+ C+ APYFPP DP +F I H++FGASN+ K LQELP  +R DAVN
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query: 66  SIVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLAKAQAEILSFQMQQ 115
           S+VYEA ARMRDPVYGC G I  LQ +VS L+ QLAK Q E++  Q+Q+
Sbjct: 114 SMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQR 162

BLAST of Lag0009849 vs. ExPASy Swiss-Prot
Match: Q9LQR0 (LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 7.2e-38
Identity = 71/109 (65.14%), Postives = 87/109 (79.82%), Query Frame = 0

Query: 6   SPCASCKLLRRRCAESCIFAPYFPPNDPQRFAIVHKIFGASNVSKMLQELPVDKRADAVN 65
           SPCA+CK+LRRRCAE C+ APYFPP DP +F I H++FGASN+ K LQELP  +R DAVN
Sbjct: 32  SPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 91

Query: 66  SIVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLAKAQAEILSFQMQQ 115
           S+VYEA AR+RDPVYGC G I  LQ +VS L+ QLAKAQ E+++ Q Q+
Sbjct: 92  SMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQR 140

BLAST of Lag0009849 vs. ExPASy Swiss-Prot
Match: Q8L5T5 (LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 SV=2)

HSP 1 Score: 152.5 bits (384), Expect = 4.0e-36
Identity = 68/118 (57.63%), Postives = 92/118 (77.97%), Query Frame = 0

Query: 6   SPCASCKLLRRRCAESCIFAPYFPPNDPQRFAIVHKIFGASNVSKMLQELPVDKRADAVN 65
           +PCA+CKLLRRRCA+ C F+PYF P++P +FA VHK+FGASNVSKML E+P  +RADA N
Sbjct: 44  TPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAAN 103

Query: 66  SIVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLAKAQAEILSFQMQQQVAPTTFPT 124
           S+VYEA+ R+RDPVYGC+G IS LQ +V  L+ +L   ++EIL ++ ++ VA    P+
Sbjct: 104 SLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREAVATLIVPS 161

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6605396.13.3e-6478.13LOB domain-containing protein 12, partial [Cucurbita argyrosperma subsp. sororia... [more]
XP_022947802.19.7e-6477.50LOB domain-containing protein 12-like [Cucurbita moschata][more]
XP_023533075.11.3e-6377.50LOB domain-containing protein 12-like [Cucurbita pepo subsp. pepo][more]
XP_023006803.11.1e-6276.88LOB domain-containing protein 12-like [Cucurbita maxima][more]
XP_008463841.13.0e-5771.60PREDICTED: LOB domain-containing protein 12-like [Cucumis melo][more]
Match NameE-valueIdentityDescription
Q8LBW33.5e-4873.28LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S... [more]
Q9SHE91.1e-3862.71LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=... [more]
Q9SK087.2e-3864.22LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 S... [more]
Q9LQR07.2e-3865.14LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=... [more]
Q8L5T54.0e-3657.63LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 S... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 86..113
NoneNo IPR availablePANTHERPTHR31301LOB DOMAIN-CONTAINING PROTEIN 4-RELATEDcoord: 1..124
NoneNo IPR availablePANTHERPTHR31301:SF97LOB DOMAIN-CONTAINING PROTEIN 12-LIKEcoord: 1..124
IPR004883Lateral organ boundaries, LOBPFAMPF03195LOBcoord: 7..104
e-value: 9.1E-41
score: 138.5
IPR004883Lateral organ boundaries, LOBPROSITEPS50891LOBcoord: 6..107
score: 26.114819

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0009849.1Lag0009849.1mRNA