Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAACACTAGCTTTCCCGATAGCAGCTGTTCGTCTGGGTAAGATATTCTATCTGCTTCACTTTCTCTCAAAGTCTCGATGGCTGAATAGTCCTTTTTGTTCCCTCTATATTTAGGGTTAGGGTTTACTTGGGATGCCATTAGTCTGATTCATTCGAATAGTCTGAGATTTCACTCGTTTTTCACTGGTAATTAGTTGATAGTTTTCTACACTCTTTGATATACATGTCCGTCTTTTATGTCCTCAACAGGTCGGATCAGTATCGATTAGTCTTTTCATAGTTTTCGTATGACTGCCGTTCGATAATTTGCCATACCCATCGAAGCGCCACGATTTGGTTCTTTAGACAGTTATTTTCATAGCTTCGTTTTTCTTGGGTCTCCGTTGTTTGGTATGTTAAGCCCATTATTGCCAAACAGCTTGTGTAGGCTCAAAAGTCGAAAAATGGTGATTGGAAGTTTATTGTTAGTTCGAGTATCATTTGCTTGAATCTCTCCTTTGTCAAATCATTTTAAGGCTGATGGAATTCGTCGAAGATAGGCGTTCTACTAGGTATCTTTTTTTTTTTTTTTTTTGAAACAATACTAGGTATCTAAGATATTGATTTTTACGGACTAAGATAATTAATAATGTTATGCTGGTTATGAAATGAATGGACGTCTGTGAGGTGCTGGAGTGACGAGTGAGTTTGATTTAATTAACAATGTTTGGTATGTCTGTTATGCTGGCTTGATGATTTTTGGTAACTTTAATATTTAATGTTCTGTTCATCATTTGATGCACCTTTGCCCGCCTTTCTTAAGATGTTTAAGGTTTGGCTCTAATATTTTTTCAATTCTAAAATAGTTTTGTTTTTTATCGCTGTAACTCATAAATAAAATATTAGCATGAATGGCAGAATTTGGACTAATCTATTTTAGTGGAGTTTCCTCTATCATAAGAGTAGATTATGGTTGCATGATAATGATAATGATAATCTTTACTATGTGGTTCCATTGGGTAAGAATTTTCTCTATCACCCGCTTCTAAGACTGAATTCAAGAATACCCATCCACACACACAAATAACTTGGATAATTGATTAGTTTTACCTGATTTAAATCAGCTTTGATATTTTTCTTTTTCCTCAGCTGACAGCACCAAAAAGGCTGACCCTAAGGCTGAAGCCTTGAAAACTGCAAAGGCAGTAAAATCGGTCCAACATTTAAGAAGAAAGCGAAGAGAATCAGGACATCAGTCATTGGTTTTCATTGTGGACATTCGTGCTGATAAGAAAAAAATCAAGGACGCCATGAAAAAGATGCACGACATCGAGACCAAGAAAGTGACCACGTTGATCAGGTAA
mRNA sequence
ATGGTAACACTAGCTTTCCCGATAGCAGCTGTTCGTCTGGGGTTAGGGTTTACTTGGGATGCCATTAGTCTGATTCATTCGAATAGTCTGAGATTTCACTCGTTTTTCACTGCTGACAGCACCAAAAAGGCTGACCCTAAGGCTGAAGCCTTGAAAACTGCAAAGGCAGTAAAATCGGTCCAACATTTAAGAAGAAAGCGAAGAGAATCAGGACATCAGTCATTGGTTTTCATTGTGGACATTCGTGCTGATAAGAAAAAAATCAAGGACGCCATGAAAAAGATGCACGACATCGAGACCAAGAAAGTGACCACGTTGATCAGGTAA
Coding sequence (CDS)
ATGGTAACACTAGCTTTCCCGATAGCAGCTGTTCGTCTGGGGTTAGGGTTTACTTGGGATGCCATTAGTCTGATTCATTCGAATAGTCTGAGATTTCACTCGTTTTTCACTGCTGACAGCACCAAAAAGGCTGACCCTAAGGCTGAAGCCTTGAAAACTGCAAAGGCAGTAAAATCGGTCCAACATTTAAGAAGAAAGCGAAGAGAATCAGGACATCAGTCATTGGTTTTCATTGTGGACATTCGTGCTGATAAGAAAAAAATCAAGGACGCCATGAAAAAGATGCACGACATCGAGACCAAGAAAGTGACCACGTTGATCAGGTAA
Protein sequence
MVTLAFPIAAVRLGLGFTWDAISLIHSNSLRFHSFFTADSTKKADPKAEALKTAKAVKSVQHLRRKRRESGHQSLVFIVDIRADKKKIKDAMKKMHDIETKKVTTLIR
Homology
BLAST of Lag0007690 vs. NCBI nr
Match:
KZV20942.1 (hypothetical protein F511_40125 [Dorcoceras hygrometricum])
HSP 1 Score: 80.9 bits (198), Expect = 7.6e-12
Identity = 49/92 (53.26%), Postives = 61/92 (66.30%), Query Frame = 0
Query: 38 ADSTKKADPKAEALKTAKAVKSVQHLRRKRRE---------------------SGHQSLV 97
ADSTKK+DPKA+ALKT+KAVK ++K ++ + +LV
Sbjct: 6 ADSTKKSDPKAQALKTSKAVKGSTTFKKKSKKIRTKYQILKYPLTTESAMKKIEDNNTLV 65
Query: 98 FIVDIRADKKKIKDAMKKMHDIETKKVTTLIR 109
FIVDIRADKKKIKDA+KKM+DI+TKKV TLIR
Sbjct: 66 FIVDIRADKKKIKDAVKKMYDIQTKKVNTLIR 97
BLAST of Lag0007690 vs. NCBI nr
Match:
CAG7905614.1 (unnamed protein product, partial [Brassica rapa])
HSP 1 Score: 79.7 bits (195), Expect = 1.7e-11
Identity = 50/94 (53.19%), Postives = 61/94 (64.89%), Query Frame = 0
Query: 39 DSTKKADPKAEALKTAKAVKSVQHLRRKRRE------------------------SGHQS 98
D TKKADPKA+ALK AKAVKS Q +++K ++ + +
Sbjct: 2 DVTKKADPKAKALKAAKAVKSGQVIKKKAKKIRTKLDHYGILKYPLTTESAMKKIEDNNT 61
Query: 99 LVFIVDIRADKKKIKDAMKKMHDIETKKVTTLIR 109
LVFIVDIRADKKKIKDA+KKM+DI+TKKV TLIR
Sbjct: 62 LVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIR 95
BLAST of Lag0007690 vs. NCBI nr
Match:
KAG7030529.1 (60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 77.8 bits (190), Expect = 6.4e-11
Identity = 50/92 (54.35%), Postives = 61/92 (66.30%), Query Frame = 0
Query: 38 ADSTKKADPKAEALKTAKAVKSV---QHLRRKRRE------------------SGHQSLV 97
A++TKKADPKA+ALKTAKAVK + L R + + + +LV
Sbjct: 5 AENTKKADPKAQALKTAKAVKRIGIPMRLPRHKLDQYQILKYPLTTESAMKKIEDNNTLV 64
Query: 98 FIVDIRADKKKIKDAMKKMHDIETKKVTTLIR 109
FIVDIRADKKKIKDA+KKM+DI+TKKV TLIR
Sbjct: 65 FIVDIRADKKKIKDAVKKMYDIQTKKVNTLIR 96
BLAST of Lag0007690 vs. NCBI nr
Match:
CAG7865606.1 (unnamed protein product, partial [Brassica rapa])
HSP 1 Score: 74.7 bits (182), Expect = 5.4e-10
Identity = 55/132 (41.67%), Postives = 66/132 (50.00%), Query Frame = 0
Query: 28 NSLRFHSFFTADSTKKADPKAEALKTAKAVKSVQHLRRKRRE------------------ 87
NSL H FF D TKK DPKA+ALK AKAVKS Q +++K ++
Sbjct: 3 NSLFLH-FFAVDVTKKPDPKAKALKAAKAVKSGQIIKKKAKKIRTKVTFHRPKTLTKARD 62
Query: 88 ---------------------------------SGHQSLVFIVDIRADKKKIKDAMKKMH 109
+ +LVFIVDIRADKKKIKDA+KKM+
Sbjct: 63 PKYPRISATPRNKLDHYGILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMY 122
BLAST of Lag0007690 vs. NCBI nr
Match:
VDD57439.1 (unnamed protein product, partial [Brassica oleracea])
HSP 1 Score: 73.6 bits (179), Expect = 1.2e-09
Identity = 52/125 (41.60%), Postives = 63/125 (50.40%), Query Frame = 0
Query: 35 FFTADSTKKADPKAEALKTAKAVKSVQHLRRKRRE------------------------- 94
FF D TKKADPKA+ALK AKAVKS Q +++K ++
Sbjct: 2 FFAVDVTKKADPKAKALKAAKAVKSGQIIKKKAKKIRTKVTFHRPKTLTKARDPKYPRIS 61
Query: 95 --------------------------SGHQSLVFIVDIRADKKKIKDAMKKMHDIETKKV 109
+ +LVFIVDIRADKKKIKDA+KKM+DI+TKKV
Sbjct: 62 ATPRNKLDHYGILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 121
BLAST of Lag0007690 vs. ExPASy Swiss-Prot
Match:
Q8LD46 (60S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=2)
HSP 1 Score: 69.7 bits (169), Expect = 2.3e-11
Identity = 50/121 (41.32%), Postives = 61/121 (50.41%), Query Frame = 0
Query: 39 DSTKKADPKAEALKTAKAVKSVQHLRRK-------------------------------- 98
D+TKKADPKA+ALK AKAVKS Q ++K
Sbjct: 7 DTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPKISATPR 66
Query: 99 -------------------RRESGHQSLVFIVDIRADKKKIKDAMKKMHDIETKKVTTLI 109
++ + +LVFIVDIRADKKKIKDA+KKM+DI+TKKV TLI
Sbjct: 67 NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLI 126
BLAST of Lag0007690 vs. ExPASy Swiss-Prot
Match:
Q9M3C3 (60S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=1)
HSP 1 Score: 66.6 bits (161), Expect = 1.9e-10
Identity = 49/121 (40.50%), Postives = 60/121 (49.59%), Query Frame = 0
Query: 39 DSTKKADPKAEALKTAKAVKSVQHLRRKRRE----------------------------- 98
D TKKADPKA+ALK AKAVKS Q +++ ++
Sbjct: 7 DVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPKISATPR 66
Query: 99 ----------------------SGHQSLVFIVDIRADKKKIKDAMKKMHDIETKKVTTLI 109
+ +LVFIVDIRADKKKIKDA+KKM+DI+TKKV TLI
Sbjct: 67 NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLI 126
BLAST of Lag0007690 vs. ExPASy Swiss-Prot
Match:
Q07761 (60S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1)
HSP 1 Score: 64.7 bits (156), Expect = 7.3e-10
Identity = 47/122 (38.52%), Postives = 60/122 (49.18%), Query Frame = 0
Query: 38 ADSTKKADPKAEALKTAKAVKSVQHLRRK------------------------------- 97
AD +KK+DPKA+A K AKAVKS L++K
Sbjct: 6 ADPSKKSDPKAQAAKVAKAVKSGSTLKKKSQKIRTKVTFHRPKTLKKDRNPKYPRISAPG 65
Query: 98 --------------------RRESGHQSLVFIVDIRADKKKIKDAMKKMHDIETKKVTTL 109
++ + +LVFIVDI+ADKKKIKDA+KKM+DI+TKKV TL
Sbjct: 66 RNKLDQYGILKYPLTTESAMKKIEDNNTLVFIVDIKADKKKIKDAVKKMYDIQTKKVNTL 125
BLAST of Lag0007690 vs. ExPASy Swiss-Prot
Match:
Q9AT35 (60S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1)
HSP 1 Score: 60.8 bits (146), Expect = 1.1e-08
Identity = 48/121 (39.67%), Postives = 60/121 (49.59%), Query Frame = 0
Query: 39 DSTKKADPKAEALKTAKAVKS-------VQHLRRK------------------------- 98
D TKK+D KA+ALKTAKAVKS V+ +R
Sbjct: 7 DVTKKSDAKAQALKTAKAVKSGTTKFKKVKKIRTSVTFHRPRTLTKDRNPKYPRISATPR 66
Query: 99 -------------------RRESGHQSLVFIVDIRADKKKIKDAMKKMHDIETKKVTTLI 109
++ + +LVFIVDIRA+KKKIKDA+KKM+DI+TKKV TLI
Sbjct: 67 NKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTKKVNTLI 126
BLAST of Lag0007690 vs. ExPASy Swiss-Prot
Match:
O22644 (60S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1)
HSP 1 Score: 55.1 bits (131), Expect = 5.8e-07
Identity = 47/123 (38.21%), Postives = 57/123 (46.34%), Query Frame = 0
Query: 38 ADSTKKADPKAEALKTAKAVKS-VQHLRRKRRE--------------------------- 97
A KK D KA+ALK AKAVKS V L++K ++
Sbjct: 5 AKVAKKPDGKAQALKVAKAVKSGVSTLQKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAP 64
Query: 98 ------------------------SGHQSLVFIVDIRADKKKIKDAMKKMHDIETKKVTT 109
+ +LVFIVDIRADKKKIK A+KKM+DI+TKKV T
Sbjct: 65 PRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNT 124
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KZV20942.1 | 7.6e-12 | 53.26 | hypothetical protein F511_40125 [Dorcoceras hygrometricum] | [more] |
CAG7905614.1 | 1.7e-11 | 53.19 | unnamed protein product, partial [Brassica rapa] | [more] |
KAG7030529.1 | 6.4e-11 | 54.35 | 60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
CAG7865606.1 | 5.4e-10 | 41.67 | unnamed protein product, partial [Brassica rapa] | [more] |
VDD57439.1 | 1.2e-09 | 41.60 | unnamed protein product, partial [Brassica oleracea] | [more] |
Match Name | E-value | Identity | Description | |
Q8LD46 | 2.3e-11 | 41.32 | 60S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=... | [more] |
Q9M3C3 | 1.9e-10 | 40.50 | 60S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=... | [more] |
Q07761 | 7.3e-10 | 38.52 | 60S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1 | [more] |
Q9AT35 | 1.1e-08 | 39.67 | 60S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1 | [more] |
O22644 | 5.8e-07 | 38.21 | 60S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1 | [more] |