Lag0007690 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0007690
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	50S ribosomal protein L23, chloroplastic
Location	chr9: 3149683 .. 3151028 (+)
RNA-Seq Expression	Lag0007690
Synteny	Lag0007690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAACACTAGCTTTCCCGATAGCAGCTGTTCGTCTGGGTAAGATATTCTATCTGCTTCACTTTCTCTCAAAGTCTCGATGGCTGAATAGTCCTTTTTGTTCCCTCTATATTTAGGGTTAGGGTTTACTTGGGATGCCATTAGTCTGATTCATTCGAATAGTCTGAGATTTCACTCGTTTTTCACTGGTAATTAGTTGATAGTTTTCTACACTCTTTGATATACATGTCCGTCTTTTATGTCCTCAACAGGTCGGATCAGTATCGATTAGTCTTTTCATAGTTTTCGTATGACTGCCGTTCGATAATTTGCCATACCCATCGAAGCGCCACGATTTGGTTCTTTAGACAGTTATTTTCATAGCTTCGTTTTTCTTGGGTCTCCGTTGTTTGGTATGTTAAGCCCATTATTGCCAAACAGCTTGTGTAGGCTCAAAAGTCGAAAAATGGTGATTGGAAGTTTATTGTTAGTTCGAGTATCATTTGCTTGAATCTCTCCTTTGTCAAATCATTTTAAGGCTGATGGAATTCGTCGAAGATAGGCGTTCTACTAGGTATCTTTTTTTTTTTTTTTTTTGAAACAATACTAGGTATCTAAGATATTGATTTTTACGGACTAAGATAATTAATAATGTTATGCTGGTTATGAAATGAATGGACGTCTGTGAGGTGCTGGAGTGACGAGTGAGTTTGATTTAATTAACAATGTTTGGTATGTCTGTTATGCTGGCTTGATGATTTTTGGTAACTTTAATATTTAATGTTCTGTTCATCATTTGATGCACCTTTGCCCGCCTTTCTTAAGATGTTTAAGGTTTGGCTCTAATATTTTTTCAATTCTAAAATAGTTTTGTTTTTTATCGCTGTAACTCATAAATAAAATATTAGCATGAATGGCAGAATTTGGACTAATCTATTTTAGTGGAGTTTCCTCTATCATAAGAGTAGATTATGGTTGCATGATAATGATAATGATAATCTTTACTATGTGGTTCCATTGGGTAAGAATTTTCTCTATCACCCGCTTCTAAGACTGAATTCAAGAATACCCATCCACACACACAAATAACTTGGATAATTGATTAGTTTTACCTGATTTAAATCAGCTTTGATATTTTTCTTTTTCCTCAGCTGACAGCACCAAAAAGGCTGACCCTAAGGCTGAAGCCTTGAAAACTGCAAAGGCAGTAAAATCGGTCCAACATTTAAGAAGAAAGCGAAGAGAATCAGGACATCAGTCATTGGTTTTCATTGTGGACATTCGTGCTGATAAGAAAAAAATCAAGGACGCCATGAAAAAGATGCACGACATCGAGACCAAGAAAGTGACCACGTTGATCAGGTAA

mRNA sequence

ATGGTAACACTAGCTTTCCCGATAGCAGCTGTTCGTCTGGGGTTAGGGTTTACTTGGGATGCCATTAGTCTGATTCATTCGAATAGTCTGAGATTTCACTCGTTTTTCACTGCTGACAGCACCAAAAAGGCTGACCCTAAGGCTGAAGCCTTGAAAACTGCAAAGGCAGTAAAATCGGTCCAACATTTAAGAAGAAAGCGAAGAGAATCAGGACATCAGTCATTGGTTTTCATTGTGGACATTCGTGCTGATAAGAAAAAAATCAAGGACGCCATGAAAAAGATGCACGACATCGAGACCAAGAAAGTGACCACGTTGATCAGGTAA

Coding sequence (CDS)

ATGGTAACACTAGCTTTCCCGATAGCAGCTGTTCGTCTGGGGTTAGGGTTTACTTGGGATGCCATTAGTCTGATTCATTCGAATAGTCTGAGATTTCACTCGTTTTTCACTGCTGACAGCACCAAAAAGGCTGACCCTAAGGCTGAAGCCTTGAAAACTGCAAAGGCAGTAAAATCGGTCCAACATTTAAGAAGAAAGCGAAGAGAATCAGGACATCAGTCATTGGTTTTCATTGTGGACATTCGTGCTGATAAGAAAAAAATCAAGGACGCCATGAAAAAGATGCACGACATCGAGACCAAGAAAGTGACCACGTTGATCAGGTAA

Protein sequence

MVTLAFPIAAVRLGLGFTWDAISLIHSNSLRFHSFFTADSTKKADPKAEALKTAKAVKSVQHLRRKRRESGHQSLVFIVDIRADKKKIKDAMKKMHDIETKKVTTLIR

Homology

[Close]

BLAST of Lag0007690 vs. NCBI nr
Match: KZV20942.1 (hypothetical protein F511_40125 [Dorcoceras hygrometricum])

HSP 1 Score: 80.9 bits (198), Expect = 7.6e-12
Identity = 49/92 (53.26%), Postives = 61/92 (66.30%), Query Frame = 0


Query: 38  ADSTKKADPKAEALKTAKAVKSVQHLRRKRRE---------------------SGHQSLV 97
           ADSTKK+DPKA+ALKT+KAVK     ++K ++                       + +LV
Sbjct: 6   ADSTKKSDPKAQALKTSKAVKGSTTFKKKSKKIRTKYQILKYPLTTESAMKKIEDNNTLV 65

Query: 98  FIVDIRADKKKIKDAMKKMHDIETKKVTTLIR 109
           FIVDIRADKKKIKDA+KKM+DI+TKKV TLIR
Sbjct: 66  FIVDIRADKKKIKDAVKKMYDIQTKKVNTLIR 97

[Close]

BLAST of Lag0007690 vs. NCBI nr
Match: CAG7905614.1 (unnamed protein product, partial [Brassica rapa])

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-11
Identity = 50/94 (53.19%), Postives = 61/94 (64.89%), Query Frame = 0


Query: 39  DSTKKADPKAEALKTAKAVKSVQHLRRKRRE------------------------SGHQS 98
           D TKKADPKA+ALK AKAVKS Q +++K ++                          + +
Sbjct: 2   DVTKKADPKAKALKAAKAVKSGQVIKKKAKKIRTKLDHYGILKYPLTTESAMKKIEDNNT 61

Query: 99  LVFIVDIRADKKKIKDAMKKMHDIETKKVTTLIR 109
           LVFIVDIRADKKKIKDA+KKM+DI+TKKV TLIR
Sbjct: 62  LVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIR 95

[Close]

BLAST of Lag0007690 vs. NCBI nr
Match: KAG7030529.1 (60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 77.8 bits (190), Expect = 6.4e-11
Identity = 50/92 (54.35%), Postives = 61/92 (66.30%), Query Frame = 0


Query: 38  ADSTKKADPKAEALKTAKAVKSV---QHLRRKRRE------------------SGHQSLV 97
           A++TKKADPKA+ALKTAKAVK +     L R + +                    + +LV
Sbjct: 5   AENTKKADPKAQALKTAKAVKRIGIPMRLPRHKLDQYQILKYPLTTESAMKKIEDNNTLV 64

Query: 98  FIVDIRADKKKIKDAMKKMHDIETKKVTTLIR 109
           FIVDIRADKKKIKDA+KKM+DI+TKKV TLIR
Sbjct: 65  FIVDIRADKKKIKDAVKKMYDIQTKKVNTLIR 96

[Close]

BLAST of Lag0007690 vs. NCBI nr
Match: CAG7865606.1 (unnamed protein product, partial [Brassica rapa])

HSP 1 Score: 74.7 bits (182), Expect = 5.4e-10
Identity = 55/132 (41.67%), Postives = 66/132 (50.00%), Query Frame = 0


Query: 28  NSLRFHSFFTADSTKKADPKAEALKTAKAVKSVQHLRRKRRE------------------ 87
           NSL  H FF  D TKK DPKA+ALK AKAVKS Q +++K ++                  
Sbjct: 3   NSLFLH-FFAVDVTKKPDPKAKALKAAKAVKSGQIIKKKAKKIRTKVTFHRPKTLTKARD 62

Query: 88  ---------------------------------SGHQSLVFIVDIRADKKKIKDAMKKMH 109
                                              + +LVFIVDIRADKKKIKDA+KKM+
Sbjct: 63  PKYPRISATPRNKLDHYGILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMY 122

[Close]

BLAST of Lag0007690 vs. NCBI nr
Match: VDD57439.1 (unnamed protein product, partial [Brassica oleracea])

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-09
Identity = 52/125 (41.60%), Postives = 63/125 (50.40%), Query Frame = 0


Query: 35  FFTADSTKKADPKAEALKTAKAVKSVQHLRRKRRE------------------------- 94
           FF  D TKKADPKA+ALK AKAVKS Q +++K ++                         
Sbjct: 2   FFAVDVTKKADPKAKALKAAKAVKSGQIIKKKAKKIRTKVTFHRPKTLTKARDPKYPRIS 61

Query: 95  --------------------------SGHQSLVFIVDIRADKKKIKDAMKKMHDIETKKV 109
                                       + +LVFIVDIRADKKKIKDA+KKM+DI+TKKV
Sbjct: 62  ATPRNKLDHYGILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 121

[Close]

BLAST of Lag0007690 vs. ExPASy Swiss-Prot
Match: Q8LD46 (60S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=2)

HSP 1 Score: 69.7 bits (169), Expect = 2.3e-11
Identity = 50/121 (41.32%), Postives = 61/121 (50.41%), Query Frame = 0


Query: 39  DSTKKADPKAEALKTAKAVKSVQHLRRK-------------------------------- 98
           D+TKKADPKA+ALK AKAVKS Q  ++K                                
Sbjct: 7   DTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPKISATPR 66

Query: 99  -------------------RRESGHQSLVFIVDIRADKKKIKDAMKKMHDIETKKVTTLI 109
                              ++   + +LVFIVDIRADKKKIKDA+KKM+DI+TKKV TLI
Sbjct: 67  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLI 126

[Close]

BLAST of Lag0007690 vs. ExPASy Swiss-Prot
Match: Q9M3C3 (60S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.9e-10
Identity = 49/121 (40.50%), Postives = 60/121 (49.59%), Query Frame = 0


Query: 39  DSTKKADPKAEALKTAKAVKSVQHLRRKRRE----------------------------- 98
           D TKKADPKA+ALK AKAVKS Q +++  ++                             
Sbjct: 7   DVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPKISATPR 66

Query: 99  ----------------------SGHQSLVFIVDIRADKKKIKDAMKKMHDIETKKVTTLI 109
                                   + +LVFIVDIRADKKKIKDA+KKM+DI+TKKV TLI
Sbjct: 67  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLI 126

[Close]

BLAST of Lag0007690 vs. ExPASy Swiss-Prot
Match: Q07761 (60S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.3e-10
Identity = 47/122 (38.52%), Postives = 60/122 (49.18%), Query Frame = 0


Query: 38  ADSTKKADPKAEALKTAKAVKSVQHLRRK------------------------------- 97
           AD +KK+DPKA+A K AKAVKS   L++K                               
Sbjct: 6   ADPSKKSDPKAQAAKVAKAVKSGSTLKKKSQKIRTKVTFHRPKTLKKDRNPKYPRISAPG 65

Query: 98  --------------------RRESGHQSLVFIVDIRADKKKIKDAMKKMHDIETKKVTTL 109
                               ++   + +LVFIVDI+ADKKKIKDA+KKM+DI+TKKV TL
Sbjct: 66  RNKLDQYGILKYPLTTESAMKKIEDNNTLVFIVDIKADKKKIKDAVKKMYDIQTKKVNTL 125

[Close]

BLAST of Lag0007690 vs. ExPASy Swiss-Prot
Match: Q9AT35 (60S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-08
Identity = 48/121 (39.67%), Postives = 60/121 (49.59%), Query Frame = 0


Query: 39  DSTKKADPKAEALKTAKAVKS-------VQHLRRK------------------------- 98
           D TKK+D KA+ALKTAKAVKS       V+ +R                           
Sbjct: 7   DVTKKSDAKAQALKTAKAVKSGTTKFKKVKKIRTSVTFHRPRTLTKDRNPKYPRISATPR 66

Query: 99  -------------------RRESGHQSLVFIVDIRADKKKIKDAMKKMHDIETKKVTTLI 109
                              ++   + +LVFIVDIRA+KKKIKDA+KKM+DI+TKKV TLI
Sbjct: 67  NKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTKKVNTLI 126

[Close]

BLAST of Lag0007690 vs. ExPASy Swiss-Prot
Match: O22644 (60S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.8e-07
Identity = 47/123 (38.21%), Postives = 57/123 (46.34%), Query Frame = 0


Query: 38  ADSTKKADPKAEALKTAKAVKS-VQHLRRKRRE--------------------------- 97
           A   KK D KA+ALK AKAVKS V  L++K ++                           
Sbjct: 5   AKVAKKPDGKAQALKVAKAVKSGVSTLQKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAP 64

Query: 98  ------------------------SGHQSLVFIVDIRADKKKIKDAMKKMHDIETKKVTT 109
                                     + +LVFIVDIRADKKKIK A+KKM+DI+TKKV T
Sbjct: 65  PRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNT 124

The following BLAST results are available for this feature:

BLAST of Lag0007690 vs. NCBI nr


Match Name	E-value	Identity	Description
KZV20942.1	7.6e-12	53.26	hypothetical protein F511_40125 [Dorcoceras hygrometricum]	[more]
CAG7905614.1	1.7e-11	53.19	unnamed protein product, partial [Brassica rapa]	[more]
KAG7030529.1	6.4e-11	54.35	60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
CAG7865606.1	5.4e-10	41.67	unnamed protein product, partial [Brassica rapa]	[more]
VDD57439.1	1.2e-09	41.60	unnamed protein product, partial [Brassica oleracea]	[more]

BLAST of Lag0007690 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LD46	2.3e-11	41.32	60S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=...	[more]
Q9M3C3	1.9e-10	40.50	60S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=...	[more]
Q07761	7.3e-10	38.52	60S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1	[more]
Q9AT35	1.1e-08	39.67	60S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1	[more]
O22644	5.8e-07	38.21	60S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 28..108 e-value: 3.3E-8 score: 35.6
IPR013025	Ribosomal protein L25/L23	PANTHER	PTHR11620	60S RIBOSOMAL PROTEIN L23A	coord: 71..108
IPR013025	Ribosomal protein L25/L23	PANTHER	PTHR11620	60S RIBOSOMAL PROTEIN L23A	coord: 39..68
None	No IPR available	PANTHER	PTHR11620:SF76	BNAC04G06030D PROTEIN	coord: 71..108
None	No IPR available	PANTHER	PTHR11620:SF76	BNAC04G06030D PROTEIN	coord: 39..68
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 72..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0007690.1	Lag0007690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome