Lag0007683 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0007683
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ty3-gypsy retrotransposon protein
Location	chr9: 3036030 .. 3036377 (+)
RNA-Seq Expression	Lag0007683
Synteny	Lag0007683

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATATGGACTCAAATGGCAGAGAAAAACCAAGGCGAAATGGTCATGCAAGAAAATCCTTTATTTGACTATTCTACTTCATCTTCTGAGCAGGCAAAGGAGACATCAAATCCTGACGTGATGTCTGTAATGATGGCTGACATAGGTACAGGCGAAGAAAGAATGGCTGAATTGGAAAGAAAAGTCAGCATGTTGATGAAGGCGATTGAGGAGAGAGATTATGAAATTGCATCTCTGAAGAATTACATAGAAACACCCGCTGTAAAGAATAATGACAAAAGGAAGGATTTCATGCAAGAAAACCAACCTCAACATTCCACTTCAATTGCTTCGTTGTCCGTTCAGTAG

mRNA sequence

ATGATATGGACTCAAATGGCAGAGAAAAACCAAGGCGAAATGGTCATGCAAGAAAATCCTTTATTTGACTATTCTACTTCATCTTCTGAGCAGGCAAAGGAGACATCAAATCCTGACGTGATGTCTGTAATGATGGCTGACATAGGTACAGGCGAAGAAAGAATGGCTGAATTGGAAAGAAAAGTCAGCATGTTGATGAAGGCGATTGAGGAGAGAGATTATGAAATTGCATCTCTGAAGAATTACATAGAAACACCCGCTGTAAAGAATAATGACAAAAGGAAGGATTTCATGCAAGAAAACCAACCTCAACATTCCACTTCAATTGCTTCGTTGTCCGTTCAGTAG

Coding sequence (CDS)

ATGATATGGACTCAAATGGCAGAGAAAAACCAAGGCGAAATGGTCATGCAAGAAAATCCTTTATTTGACTATTCTACTTCATCTTCTGAGCAGGCAAAGGAGACATCAAATCCTGACGTGATGTCTGTAATGATGGCTGACATAGGTACAGGCGAAGAAAGAATGGCTGAATTGGAAAGAAAAGTCAGCATGTTGATGAAGGCGATTGAGGAGAGAGATTATGAAATTGCATCTCTGAAGAATTACATAGAAACACCCGCTGTAAAGAATAATGACAAAAGGAAGGATTTCATGCAAGAAAACCAACCTCAACATTCCACTTCAATTGCTTCGTTGTCCGTTCAGTAG

Protein sequence

MIWTQMAEKNQGEMVMQENPLFDYSTSSSEQAKETSNPDVMSVMMADIGTGEERMAELERKVSMLMKAIEERDYEIASLKNYIETPAVKNNDKRKDFMQENQPQHSTSIASLSVQ

Homology

[Close]

BLAST of Lag0007683 vs. NCBI nr
Match: KAA0051994.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK04565.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 119.8 bits (299), Expect = 1.6e-23
Identity = 68/124 (54.84%), Postives = 92/124 (74.19%), Query Frame = 0


Query: 2   IWTQMAEKNQGEMVMQENPLFDYSTSSSEQA-KETSNPDVMSVMMADIGTGEERMAELER 61
           IW Q+++  +G +V++ENP  D   S SE++ +E   P++MSVM+ D+ T E+RMAELE+
Sbjct: 42  IWEQISKPPKGGIVIKENPAIDEHNSLSERSNEEAPQPNIMSVMVTDVDTSEDRMAELEK 101

Query: 62  KVSMLMKAIEERDYEIASLKNYIE---------TPAVKNNDKRKDFMQENQPQHSTSIAS 116
           KV+MLMKA+EERD+EIASLKN+IE         T  +KN +K K  MQE+QPQ+STSIAS
Sbjct: 102 KVNMLMKAVEERDFEIASLKNHIESRDAIESSHTHIIKNVNKGKAIMQESQPQNSTSIAS 161

[Close]

BLAST of Lag0007683 vs. NCBI nr
Match: KAA0041883.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK05406.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 2.7e-23
Identity = 68/124 (54.84%), Postives = 90/124 (72.58%), Query Frame = 0


Query: 2   IWTQMAEKNQGEMVMQENPLFDYSTSSSE-QAKETSNPDVMSVMMADIGTGEERMAELER 61
           IW Q+++  +G +V++ENP  D   S SE  ++E ++P++MSVM+ D+ T E RM ELE+
Sbjct: 42  IWEQISKPPKGGIVIKENPAIDEHYSFSEHSSEEMAHPNIMSVMVTDVDTSENRMVELEK 101

Query: 62  KVSMLMKAIEERDYEIASLKNYIET---------PAVKNNDKRKDFMQENQPQHSTSIAS 116
           KV+MLMK +EERDYEIASLKN+IE+           VKN DK K  MQE+QPQ+STSIAS
Sbjct: 102 KVNMLMKVVEERDYEIASLKNHIESRDAAESSHKHTVKNTDKGKAVMQESQPQNSTSIAS 161

[Close]

BLAST of Lag0007683 vs. NCBI nr
Match: KAA0047477.1 (uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 118.2 bits (295), Expect = 4.5e-23
Identity = 67/124 (54.03%), Postives = 91/124 (73.39%), Query Frame = 0


Query: 2   IWTQMAEKNQGEMVMQENPLFDYSTSSSEQA-KETSNPDVMSVMMADIGTGEERMAELER 61
           IW Q+++  +G +V++ENP  D   S SE++ +E   P++MSVM+ D+ T E+RMAELE+
Sbjct: 42  IWEQISKPPKGGIVIKENPAMDEHNSLSERSNEEVPQPNIMSVMVTDVDTSEDRMAELEK 101

Query: 62  KVSMLMKAIEERDYEIASLKNYIE---------TPAVKNNDKRKDFMQENQPQHSTSIAS 116
           KV+MLMKA+EERD+EIA LKN+IE         T  +KN +K K  MQE+QPQ+STSIAS
Sbjct: 102 KVNMLMKAVEERDFEIALLKNHIESRDAAESSHTHTIKNANKGKAIMQESQPQNSTSIAS 161

[Close]

BLAST of Lag0007683 vs. NCBI nr
Match: TYK19797.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 118.2 bits (295), Expect = 4.5e-23
Identity = 67/124 (54.03%), Postives = 91/124 (73.39%), Query Frame = 0


Query: 2   IWTQMAEKNQGEMVMQENPLFDYSTSSSEQ-AKETSNPDVMSVMMADIGTGEERMAELER 61
           IW Q+++  +G +V++ENP+ D   SSS+  ++E  +P++MS+M+ D+ T E RMAELE+
Sbjct: 42  IWEQISKPPKGGIVIKENPVIDEHYSSSKPLSEEMCHPNIMSIMVTDVDTSENRMAELEK 101

Query: 62  KVSMLMKAIEERDYEIASLKNYIET---------PAVKNNDKRKDFMQENQPQHSTSIAS 116
           KV+MLMK +EERDYEIA LKN+IE+           VKN DK K  MQE+QPQ+STSIAS
Sbjct: 102 KVNMLMKVVEERDYEIAFLKNHIESRDAAGSSHKHTVKNTDKGKAVMQESQPQNSTSIAS 161

[Close]

BLAST of Lag0007683 vs. NCBI nr
Match: KAA0050518.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 1.0e-22
Identity = 66/124 (53.23%), Postives = 91/124 (73.39%), Query Frame = 0


Query: 2   IWTQMAEKNQGEMVMQENPLFDYSTSSSEQA-KETSNPDVMSVMMADIGTGEERMAELER 61
           IW Q+++  +G +V++ENP  D   S SE++ +E   P++MSVM+ D+ T E+RMAELE+
Sbjct: 42  IWEQISKPPKGGIVIKENPAIDEHNSLSERSNEEVPQPNIMSVMVTDVDTSEDRMAELEK 101

Query: 62  KVSMLMKAIEERDYEIASLKNYIE---------TPAVKNNDKRKDFMQENQPQHSTSIAS 116
           KV+MLMKA+EE+D+EIA LKN+IE         T  +KN +K K  MQE+QPQ+STSIAS
Sbjct: 102 KVNMLMKAVEEKDFEIALLKNHIESRDAAESSHTHTIKNANKGKAIMQESQPQNSTSIAS 161

The following BLAST results are available for this feature:

BLAST of Lag0007683 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051994.1	1.6e-23	54.84	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK04565.1 ty3-gyp...	[more]
KAA0041883.1	2.7e-23	54.84	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK05406.1 ty3-gyp...	[more]
KAA0047477.1	4.5e-23	54.03	uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]	[more]
TYK19797.1	4.5e-23	54.03	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0050518.1	1.0e-22	53.23	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0007683 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0007683.1	Lag0007683.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid
molecular_function	GO:0003676	nucleic acid binding