Lag0007291 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0007291
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRibulose bisphosphate carboxylase large chain
LocationScvUqRz_1244_HRSCAF_2115: 171462 .. 172834 (-)
RNA-Seq ExpressionLag0007291
SyntenyLag0007291
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATTTCTCATTCGACATTCTCTCTTACCAAGCTCTCGTACTCGCCAGGGTTGAGGAGGCAGTCCGTGCCGTGAGCTAATTGGGCTTCGAGATTGCGTATACGCGAAAAGAGCTCGCTTTCGACTTTCTACCTCGGCGTTTTGTGCCCGGTTCAGGTTCAGGAAAGGGTCTTATCTCTTTCATTGGAGCACATTGATGCCGAAGGAGTCTTCGGAACCGGTGGAGAGGCTATGATGATTGAAGGCTATTCAAATAGCATGACTGATACCACAAAGAATGGGTATCTAAGTCACACCAGTGGAATAGCTTTTATAGAATAATTCTCTCGATATATGATACCAAAAACCTGCCTTATGACTGATAAGGTCAGGGGTTTCAAAAGACAAAAAAATGACAATTCTACGTGTGATAGAAAAAAATGGAGATCTTCTTTTTTTTTCAGTGTGCGCGGTTCGCCTGCCTTCCTGACCACGGATAGGCTACGGGGCTTTGCACTTCGGCCCCTGAGAATACCACATCAAGGTGACAGGATTCGAACCTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACACCTCGTCTCACCCCCCCGGAGCATATAGATCCACCCAATCGATGAACACTCAAACCAAACTCGCCCATCCTTTTGGGCACAGGGACGCGAGAACCAATCCGAGTAATCCACCGCTTTTTTTTTGAATCTACCTCCTGCAATCTCGGGCGACGCCAAAAAGCCGTCTCGTGCAGGAGCGAAGCCGATAGGGAGAGGGGAAGGAGCAAAGCCACTTTACCGAGTTTACGAGGTGAAGGAGCGCTCACATTTTGTTTTGCTTCCTCTTTCATTTGCATTTCCAAATCCGGCTCGCTCCCGGCTACGTGTCCTTTGGACCCTTTGCTTAGAAGTGGATTCGAACCACTGACACAAGGATTTTCAGTCCTTTGCTCTAACCAGCTGAGCTACCTGAACCACTTTCCTAAAGTCTGTTTTCTTCAAAGAATACGCCCTACCTTACCACTTGACTAGTAAGGGAAAAGCCCTTTACTCAAATAATTAGGGCTTTATTTTTTCGCTTGTTCGTCAAGCTTTCGAGCTGCTCTTTCAATTCAACTGCCGCCTAATCTCCCAACATGCTCAAAAACCGAGAGCCGCCCAGGGACTGGACAACCGGAGGGAGCTTGCTTCTCGAAAGAGGATAGGCCGGTCAAACAAAAACAAGGCGCAACGGGCTCTCCCTCCGCTCCTAGTCACTAAGTTGTGCTATTCTGTCCTCGGGGGGACTCCACCAAGAGGTTCTTTCTCTCACGTAATTTCGCCCGTTCCACTTCCGTGCCGGAGGAAATGGGATGAGAACCCATGA

mRNA sequence

ATGTATTTCTCATTCGACATTCTCTCTTACCAAGCTCTCGTACTCGCCAGGGTTGAGGAGGCAGTCCGTGCCGTTCAGGAAAGGGTCTTATCTCTTTCATTGGAGCACATTGATGCCGAAGGAGTCTTCGGAACCGGTGGAGAGGCTATGATGATTGAAGGCTATTCAAATAGCATGACTGATACCACAAAGAATGGTGTGCGCGGTTCGCCTGCCTTCCTGACCACGGATAGGCTACGGGGCTTTGCACTTCGGCCCCTGAGAATACCACATCAAGGGACGCGAGAACCAATCCGAGTAATCCACCGCTTTTTTTTTGAATCTACCTCCTGCAATCTCGGGCGACGCCAAAAAGCCGTCTCGTGCAGGAGCGAAGCCGATAGGGAGAGGGGAAGGAGCAAAGCCACTTTACCGAGTTTACGAGGTGAAGGAGCGCTCACATTTTGTTTTGCTTCCTCTTTCATTTGCATTTCCAAATCCGGCTCGCTCCCGGCTACGTGTCCTTTGGACCCTTTGCTTAGAAGTGGATTCGAACCACTGACACAAGGATTTTCAGTCCTTTGCTCTAACCAGCTGAGCTACCTGAACCACTTTCCTAAAGGCTTTATTTTTTCGCTTGTTCGTCAAGCTTTCGAGCTGCTCTTTCAATTCAACTGCCGCCTAATCTCCCAACATGCTCAAAAACCGAGAGCCGCCCAGGGACTGGACAACCGGAGGGAGCTTGCTTCTCGAAAGAGGATAGGCCGGTCAAACAAAAACAAGGCGCAACGGGCTCTCCCTCCGCTCCTAGTCACTAAGTTGTGCTATTCTGTCCTCGGGGGGACTCCACCAAGAGGTTCTTTCTCTCACGTAATTTCGCCCGTTCCACTTCCGTGCCGGAGGAAATGGGATGAGAACCCATGA

Coding sequence (CDS)

ATGTATTTCTCATTCGACATTCTCTCTTACCAAGCTCTCGTACTCGCCAGGGTTGAGGAGGCAGTCCGTGCCGTTCAGGAAAGGGTCTTATCTCTTTCATTGGAGCACATTGATGCCGAAGGAGTCTTCGGAACCGGTGGAGAGGCTATGATGATTGAAGGCTATTCAAATAGCATGACTGATACCACAAAGAATGGTGTGCGCGGTTCGCCTGCCTTCCTGACCACGGATAGGCTACGGGGCTTTGCACTTCGGCCCCTGAGAATACCACATCAAGGGACGCGAGAACCAATCCGAGTAATCCACCGCTTTTTTTTTGAATCTACCTCCTGCAATCTCGGGCGACGCCAAAAAGCCGTCTCGTGCAGGAGCGAAGCCGATAGGGAGAGGGGAAGGAGCAAAGCCACTTTACCGAGTTTACGAGGTGAAGGAGCGCTCACATTTTGTTTTGCTTCCTCTTTCATTTGCATTTCCAAATCCGGCTCGCTCCCGGCTACGTGTCCTTTGGACCCTTTGCTTAGAAGTGGATTCGAACCACTGACACAAGGATTTTCAGTCCTTTGCTCTAACCAGCTGAGCTACCTGAACCACTTTCCTAAAGGCTTTATTTTTTCGCTTGTTCGTCAAGCTTTCGAGCTGCTCTTTCAATTCAACTGCCGCCTAATCTCCCAACATGCTCAAAAACCGAGAGCCGCCCAGGGACTGGACAACCGGAGGGAGCTTGCTTCTCGAAAGAGGATAGGCCGGTCAAACAAAAACAAGGCGCAACGGGCTCTCCCTCCGCTCCTAGTCACTAAGTTGTGCTATTCTGTCCTCGGGGGGACTCCACCAAGAGGTTCTTTCTCTCACGTAATTTCGCCCGTTCCACTTCCGTGCCGGAGGAAATGGGATGAGAACCCATGA

Protein sequence

MYFSFDILSYQALVLARVEEAVRAVQERVLSLSLEHIDAEGVFGTGGEAMMIEGYSNSMTDTTKNGVRGSPAFLTTDRLRGFALRPLRIPHQGTREPIRVIHRFFFESTSCNLGRRQKAVSCRSEADRERGRSKATLPSLRGEGALTFCFASSFICISKSGSLPATCPLDPLLRSGFEPLTQGFSVLCSNQLSYLNHFPKGFIFSLVRQAFELLFQFNCRLISQHAQKPRAAQGLDNRRELASRKRIGRSNKNKAQRALPPLLVTKLCYSVLGGTPPRGSFSHVISPVPLPCRRKWDENP
Homology
[Close]
BLAST of Lag0007291 vs. NCBI nr
Match: YP_173477.1 (hypothetical protein NitaMp140 [Nicotiana tabacum] >BAD83543.1 hypothetical protein [Nicotiana tabacum])

HSP 1 Score: 81.6 bits (200), Expect = 1.2e-11
Identity = 42/50 (84.00%), Postives = 42/50 (84.00%), Query Frame = 0 

Query: 151 ASSFICISKSGSLPATCPLDPLLRSGFEPLTQGFSVLCSNQLSYLNHFPK 201
           A SF  ISKSGSLPAT     LLRSGFEPLTQGFSVLCSNQLSYLNHFPK
Sbjct: 54  AYSFTFISKSGSLPATVWTFRLLRSGFEPLTQGFSVLCSNQLSYLNHFPK 103

[Close]
BLAST of Lag0007291 vs. NCBI nr
Match: GER39013.1 (Orf110b protein [Striga asiatica])

HSP 1 Score: 72.8 bits (177), Expect = 5.7e-09
Identity = 41/50 (82.00%), Postives = 41/50 (82.00%), Query Frame = 0 

Query: 153 SFICISKSGSLPATC--PLDPLLRSGFEPLTQGFSVLCSNQLSYLNHFPK 201
           SF  ISKSGSL AT    L P LRSGFEPLTQGFSVLCSNQLSYLNHFPK
Sbjct: 120 SFTFISKSGSLSATFFQNLRP-LRSGFEPLTQGFSVLCSNQLSYLNHFPK 168

[Close]
BLAST of Lag0007291 vs. NCBI nr
Match: NP_064104.1 (orf110b gene product [Beta vulgaris subsp. vulgaris] >YP_004222346.1 hypothetical protein BevumaM_p112 [Beta vulgaris subsp. maritima] >YP_004842151.1 hypothetical protein BemaM_p107 [Beta macrocarpa] >CBJ14076.1 hypothetical protein [Beta vulgaris subsp. maritima] >CBJ17566.1 hypothetical protein [Beta vulgaris subsp. maritima] >CBJ20714.1 hypothetical protein [Beta vulgaris subsp. maritima] >CBL51962.1 hypothetical protein [Beta vulgaris subsp. maritima] >CBX24956.1 hypothetical protein [Beta macrocarpa])

HSP 1 Score: 63.5 bits (153), Expect = 3.5e-06
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 173 LRSGFEPLTQGFSVLCSNQLSYLNHFPK 201
           LRSGFEPLTQGFSVLCSNQLSYLNHFPK
Sbjct: 46  LRSGFEPLTQGFSVLCSNQLSYLNHFPK 73

[Close]
BLAST of Lag0007291 vs. NCBI nr
Match: KJB09734.1 (hypothetical protein B456_001G161000, partial [Gossypium raimondii])

HSP 1 Score: 63.5 bits (153), Expect = 3.5e-06
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 173 LRSGFEPLTQGFSVLCSNQLSYLNHFPK 201
           LRSGFEPLTQGFSVLCSNQLSYLNHFPK
Sbjct: 102 LRSGFEPLTQGFSVLCSNQLSYLNHFPK 129

[Close]
BLAST of Lag0007291 vs. NCBI nr
Match: CAD1835933.1 (unnamed protein product [Ananas comosus var. bracteatus])

HSP 1 Score: 59.3 bits (142), Expect = 6.5e-05
Identity = 27/30 (90.00%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 173 LRSGFEPLTQGFSVLCSNQLSYLNHFPKGF 203
           LRSGFEPLTQGFSVLCSN LSYLNHFP  F
Sbjct: 46  LRSGFEPLTQGFSVLCSNLLSYLNHFPSLF 75

[Close]
BLAST of Lag0007291 vs. ExPASy TrEMBL
Match: Q5M9T5 (Uncharacterized protein OS=Nicotiana tabacum OX=4097 GN=orf116b PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 6.0e-12
Identity = 42/50 (84.00%), Postives = 42/50 (84.00%), Query Frame = 0 

Query: 151 ASSFICISKSGSLPATCPLDPLLRSGFEPLTQGFSVLCSNQLSYLNHFPK 201
           A SF  ISKSGSLPAT     LLRSGFEPLTQGFSVLCSNQLSYLNHFPK
Sbjct: 54  AYSFTFISKSGSLPATVWTFRLLRSGFEPLTQGFSVLCSNQLSYLNHFPK 103

[Close]
BLAST of Lag0007291 vs. ExPASy TrEMBL
Match: A0A4D8YGR2 (Ribulose bisphosphate carboxylase large chain OS=Salvia splendens OX=180675 GN=Saspl_047308 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-09
Identity = 49/118 (41.53%), Postives = 64/118 (54.24%), Query Frame = 0 

Query: 174 RSGFEPLTQGFSVLCSNQLSYLNHFPKGFIFSLVRQAFELLFQFNCRLISQHAQKPRAAQ 233
           + G +   + +S  CS+ L  L   PK         + +L   FNCRLI QHAQ+PRA Q
Sbjct: 571 KEGVQEAIKRYSQHCSDSLQIL---PK--------PSLQLWCSFNCRLIPQHAQEPRAVQ 630

Query: 234 GLDNRRELASRKRIGRSNKNKAQRALPPLLVTKLCYSVLGGTPPRGSFSHVISPVPLP 292
           GLD RRELA RK+IGRS KNKAQ      L+  L  S + GT      ++ +S   +P
Sbjct: 631 GLDGRRELAYRKKIGRSKKNKAQ------LLRILVSSAIQGTGLNQEQTNALSHSAIP 671

[Close]
BLAST of Lag0007291 vs. ExPASy TrEMBL
Match: A0A5A7Q1I4 (Orf110b protein OS=Striga asiatica OX=4170 GN=STAS_15603 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.8e-09
Identity = 41/50 (82.00%), Postives = 41/50 (82.00%), Query Frame = 0 

Query: 153 SFICISKSGSLPATC--PLDPLLRSGFEPLTQGFSVLCSNQLSYLNHFPK 201
           SF  ISKSGSL AT    L P LRSGFEPLTQGFSVLCSNQLSYLNHFPK
Sbjct: 120 SFTFISKSGSLSATFFQNLRP-LRSGFEPLTQGFSVLCSNQLSYLNHFPK 168

[Close]
BLAST of Lag0007291 vs. ExPASy TrEMBL
Match: E6ZE61 (Uncharacterized protein orf110b OS=Beta vulgaris subsp. maritima OX=350892 GN=orf110b PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-06
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 173 LRSGFEPLTQGFSVLCSNQLSYLNHFPK 201
           LRSGFEPLTQGFSVLCSNQLSYLNHFPK
Sbjct: 46  LRSGFEPLTQGFSVLCSNQLSYLNHFPK 73

[Close]
BLAST of Lag0007291 vs. ExPASy TrEMBL
Match: G2XLW7 (Uncharacterized protein OS=Beta macrocarpa OX=343494 GN=orf110b PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-06
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 173 LRSGFEPLTQGFSVLCSNQLSYLNHFPK 201
           LRSGFEPLTQGFSVLCSNQLSYLNHFPK
Sbjct: 46  LRSGFEPLTQGFSVLCSNQLSYLNHFPK 73

The following BLAST results are available for this feature:
BLAST of Lag0007291 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_173477.11.2e-1184.00hypothetical protein NitaMp140 [Nicotiana tabacum] >BAD83543.1 hypothetical prot... [more]
GER39013.15.7e-0982.00Orf110b protein [Striga asiatica][more]
NP_064104.13.5e-06100.00orf110b gene product [Beta vulgaris subsp. vulgaris] >YP_004222346.1 hypothetica... [more]
KJB09734.13.5e-06100.00hypothetical protein B456_001G161000, partial [Gossypium raimondii][more]
CAD1835933.16.5e-0590.00unnamed protein product [Ananas comosus var. bracteatus][more]
BLAST of Lag0007291 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0007291 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Q5M9T56.0e-1284.00Uncharacterized protein OS=Nicotiana tabacum OX=4097 GN=orf116b PE=4 SV=1[more]
A0A4D8YGR21.2e-0941.53Ribulose bisphosphate carboxylase large chain OS=Salvia splendens OX=180675 GN=S... [more]
A0A5A7Q1I42.8e-0982.00Orf110b protein OS=Striga asiatica OX=4170 GN=STAS_15603 PE=4 SV=1[more]
E6ZE611.7e-06100.00Uncharacterized protein orf110b OS=Beta vulgaris subsp. maritima OX=350892 GN=or... [more]
G2XLW71.7e-06100.00Uncharacterized protein OS=Beta macrocarpa OX=343494 GN=orf110b PE=4 SV=1[more]
BLAST of Lag0007291 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 15..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 232..247
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 232..254

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0007291.1Lag0007291.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome