Lag0007271 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0007271
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Mitochondrial protein YMF19
Location	ScvUqRz_1244_HRSCAF_2115: 114636 .. 115115 (-)
RNA-Seq Expression	Lag0007271
Synteny	Lag0007271

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCAACTGGATAAATTGACTTATTTCACACAATTCTTCTGGTCATGCCTTTTCTTCTTTACTTTCTATATTCCCATATGCAATGATGGAGATGGAGTACTTGGGATCAGTAGAATTCTCAAACTACGGAACCAACTGGTTTCACACCGGGGGAACAACATACGGAGCAACGACCCCAACAGTTTGGAAGATATCTTGAGAAAAGGTTTTAGCACCGGCGTATCCTATATGTACTCTAGTTTATTCGAAGTATCCCAATGGTGTAACGCCGTCGACTTATTGGGAAAAAGGAGGAAAATCACTTTGATCTCTTGTTTCGGAGAAATAAGTGGCTCACGAGGTCTCGAAAGAAATATATTCTATTTGATCTCGAAGTCCTCATATAGCACTTCTTCCAATCCTGGATGGGGGATCGCTTGTAGGAATGACATAATGCTAATCCATGTTCTACACGGCCAAGGAAGCATCGTTTTTTAA

mRNA sequence

ATGCCTCAACTGGATAAATTGACTTATTTCACACAATTCTTCTGGTCATGCCTTTTCTTCTTTACTTTCTATATTCCCATATGCAATGATGGAGATGGAGTACTTGGGATCAGTAGAATTCTCAAACTACGGAACCAACTGGTTTCACACCGGGGGAACAACATACGGAGCAACGACCCCAACAGTTTGGAAGATATCTTGAGAAAAGGTTTTAGCACCGGCGTATCCTATATGTACTCTAGTTTATTCGAAGTATCCCAATGGTGTAACGCCGTCGACTTATTGGGAAAAAGGAGGAAAATCACTTTGATCTCTTGTTTCGGAGAAATAAGTGGCTCACGAGGTCTCGAAAGAAATATATTCTATTTGATCTCGAAGTCCTCATATAGCACTTCTTCCAATCCTGGATGGGGGATCGCTTGTAGGAATGACATAATGCTAATCCATGTTCTACACGGCCAAGGAAGCATCGTTTTTTAA

Coding sequence (CDS)

ATGCCTCAACTGGATAAATTGACTTATTTCACACAATTCTTCTGGTCATGCCTTTTCTTCTTTACTTTCTATATTCCCATATGCAATGATGGAGATGGAGTACTTGGGATCAGTAGAATTCTCAAACTACGGAACCAACTGGTTTCACACCGGGGGAACAACATACGGAGCAACGACCCCAACAGTTTGGAAGATATCTTGAGAAAAGGTTTTAGCACCGGCGTATCCTATATGTACTCTAGTTTATTCGAAGTATCCCAATGGTGTAACGCCGTCGACTTATTGGGAAAAAGGAGGAAAATCACTTTGATCTCTTGTTTCGGAGAAATAAGTGGCTCACGAGGTCTCGAAAGAAATATATTCTATTTGATCTCGAAGTCCTCATATAGCACTTCTTCCAATCCTGGATGGGGGATCGCTTGTAGGAATGACATAATGCTAATCCATGTTCTACACGGCCAAGGAAGCATCGTTTTTTAA

Protein sequence

MPQLDKLTYFTQFFWSCLFFFTFYIPICNDGDGVLGISRILKLRNQLVSHRGNNIRSNDPNSLEDILRKGFSTGVSYMYSSLFEVSQWCNAVDLLGKRRKITLISCFGEISGSRGLERNIFYLISKSSYSTSSNPGWGIACRNDIMLIHVLHGQGSIVF

Homology

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BLAST of Lag0007271 vs. NCBI nr
Match: YP_009913617.1 (ATPase subunit 8 [Luffa acutangula] >QLJ93002.1 ATPase subunit 8 [Luffa acutangula])

HSP 1 Score: 330.1 bits (845), Expect = 1.1e-86
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MPQLDKLTYFTQFFWSCLFFFTFYIPICNDGDGVLGISRILKLRNQLVSHRGNNIRSNDP 60
           MPQLDKLTYFTQFFWSCLFFFTFYIPICNDGDGVLGISRILKLRNQLVSHRGNNIRSNDP
Sbjct: 1   MPQLDKLTYFTQFFWSCLFFFTFYIPICNDGDGVLGISRILKLRNQLVSHRGNNIRSNDP 60

Query: 61  NSLEDILRKGFSTGVSYMYSSLFEVSQWCNAVDLLGKRRKITLISCFGEISGSRGLERNI 120
           NSLEDILRKGFSTGVSYMYSSLFEVSQWCNAVDLLGKRRKITLISCFGEISGSRGLERNI
Sbjct: 61  NSLEDILRKGFSTGVSYMYSSLFEVSQWCNAVDLLGKRRKITLISCFGEISGSRGLERNI 120

Query: 121 FYLISKSSYSTSSNPGWGIACRNDIMLIHVLHGQGSIVF 160
           FYLISKSSYSTSSNPGWGIACRNDIMLIHVLHGQGSIVF
Sbjct: 121 FYLISKSSYSTSSNPGWGIACRNDIMLIHVLHGQGSIVF 159

[Close]

BLAST of Lag0007271 vs. NCBI nr
Match: KAF3948147.1 (hypothetical protein CMV_025819 [Castanea mollissima] >QIS40622.1 ATP synthase F1 subunit 8 [Quercus variabilis])

HSP 1 Score: 323.6 bits (828), Expect = 9.9e-85
Identity = 154/159 (96.86%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MPQLDKLTYFTQFFWSCLFFFTFYIPICNDGDGVLGISRILKLRNQLVSHRGNNIRSNDP 60
           MPQLDK TYFTQFFWSCLFFFTFYIPICNDGDG+LGISRILKLRNQLVSHRGNNIRSNDP
Sbjct: 1   MPQLDKFTYFTQFFWSCLFFFTFYIPICNDGDGILGISRILKLRNQLVSHRGNNIRSNDP 60

Query: 61  NSLEDILRKGFSTGVSYMYSSLFEVSQWCNAVDLLGKRRKITLISCFGEISGSRGLERNI 120
           NSLEDILRKGFSTGVSYMYSSLFEVSQWCNAVDLLGKRRKITLISCFGEISGSRG+ERNI
Sbjct: 61  NSLEDILRKGFSTGVSYMYSSLFEVSQWCNAVDLLGKRRKITLISCFGEISGSRGMERNI 120

Query: 121 FYLISKSSYSTSSNPGWGIACRNDIMLIHVLHGQGSIVF 160
           FYLISKSSYSTSSNPGWGIAC+NDIMLIHV HGQGSIVF
Sbjct: 121 FYLISKSSYSTSSNPGWGIACKNDIMLIHVPHGQGSIVF 159

[Close]

BLAST of Lag0007271 vs. NCBI nr
Match: XP_030965149.1 (uncharacterized protein LOC115986366 isoform X1 [Quercus lobata])

HSP 1 Score: 322.8 bits (826), Expect = 1.7e-84
Identity = 153/159 (96.23%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MPQLDKLTYFTQFFWSCLFFFTFYIPICNDGDGVLGISRILKLRNQLVSHRGNNIRSNDP 60
           MPQLDK TYFTQFFWSCLFFFTFYIPICNDGDG+LGISRILKLRNQLVSHRGNNIRSNDP
Sbjct: 1   MPQLDKFTYFTQFFWSCLFFFTFYIPICNDGDGILGISRILKLRNQLVSHRGNNIRSNDP 60

Query: 61  NSLEDILRKGFSTGVSYMYSSLFEVSQWCNAVDLLGKRRKITLISCFGEISGSRGLERNI 120
           NSLEDILRKGFSTGVSYMYSSLFEVSQWCNAVDLLGKRRKITLISCFGEISGSRG+ERNI
Sbjct: 61  NSLEDILRKGFSTGVSYMYSSLFEVSQWCNAVDLLGKRRKITLISCFGEISGSRGMERNI 120

Query: 121 FYLISKSSYSTSSNPGWGIACRNDIMLIHVLHGQGSIVF 160
           FYLISKSSYSTSSNPGWGIAC+NDIMLIHV HGQGS+VF
Sbjct: 121 FYLISKSSYSTSSNPGWGIACKNDIMLIHVPHGQGSLVF 159

[Close]

BLAST of Lag0007271 vs. NCBI nr
Match: YP_009941507.1 (ATP synthase subunit 8 [Fagus sylvatica] >QOC70565.1 ATP synthase subunit 8 [Fagus sylvatica] >QVG61327.1 ATP synthase subunit 8 [Fagus sylvatica])

HSP 1 Score: 321.6 bits (823), Expect = 3.7e-84
Identity = 154/159 (96.86%), Postives = 156/159 (98.11%), Query Frame = 0


Query: 1   MPQLDKLTYFTQFFWSCLFFFTFYIPICNDGDGVLGISRILKLRNQLVSHRGNNIRSNDP 60
           MPQLDK TYFTQFFWSCLF FTFYIPICNDGDGVLGISRILKLRNQLVSHRGNNIRSNDP
Sbjct: 1   MPQLDKFTYFTQFFWSCLFLFTFYIPICNDGDGVLGISRILKLRNQLVSHRGNNIRSNDP 60

Query: 61  NSLEDILRKGFSTGVSYMYSSLFEVSQWCNAVDLLGKRRKITLISCFGEISGSRGLERNI 120
           NSLEDILRKGFSTGVSYMYSSLFEVSQWCNAVDLLGKRRKITLISCFGEISGSRG+ERNI
Sbjct: 61  NSLEDILRKGFSTGVSYMYSSLFEVSQWCNAVDLLGKRRKITLISCFGEISGSRGMERNI 120

Query: 121 FYLISKSSYSTSSNPGWGIACRNDIMLIHVLHGQGSIVF 160
           FYLISKSSYSTSSNPGWGIAC+NDIMLIHV HGQGSIVF
Sbjct: 121 FYLISKSSYSTSSNPGWGIACKNDIMLIHVPHGQGSIVF 159

[Close]

BLAST of Lag0007271 vs. NCBI nr
Match: QWQ55693.1 (ATPase subunit 8 [Erythropalum scandens])

HSP 1 Score: 321.2 bits (822), Expect = 4.9e-84
Identity = 154/159 (96.86%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MPQLDKLTYFTQFFWSCLFFFTFYIPICNDGDGVLGISRILKLRNQLVSHRGNNIRSNDP 60
           MPQLDK TYFTQFFWSCLF FTFYIPICNDGDGVLGISRILKLRNQLVSHRGNNIRSNDP
Sbjct: 1   MPQLDKFTYFTQFFWSCLFLFTFYIPICNDGDGVLGISRILKLRNQLVSHRGNNIRSNDP 60

Query: 61  NSLEDILRKGFSTGVSYMYSSLFEVSQWCNAVDLLGKRRKITLISCFGEISGSRGLERNI 120
           NSLEDILRKGFSTGVSYMYSSLFEVSQWCNAVDLLGKRRKITLISCFGEISGSRG+ERNI
Sbjct: 61  NSLEDILRKGFSTGVSYMYSSLFEVSQWCNAVDLLGKRRKITLISCFGEISGSRGMERNI 120

Query: 121 FYLISKSSYSTSSNPGWGIACRNDIMLIHVLHGQGSIVF 160
           FYLISKSSYSTSSNPGWGI CRNDIMLIHV HGQGSIVF
Sbjct: 121 FYLISKSSYSTSSNPGWGITCRNDIMLIHVPHGQGSIVF 159

[Close]

BLAST of Lag0007271 vs. ExPASy Swiss-Prot
Match: P41248 (Putative ATP synthase protein YMF19 OS=Helianthus annuus OX=4232 GN=YMF19 PE=3 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 5.3e-81
Identity = 145/159 (91.19%), Postives = 149/159 (93.71%), Query Frame = 0


Query: 1   MPQLDKLTYFTQFFWSCLFFFTFYIPICNDGDGVLGISRILKLRNQLVSHRGNNIRSNDP 60
           MPQLDK TYFTQFFWSCLF FTFYI ICNDGDG+LGISRILKLRNQL+SHR NNIRS DP
Sbjct: 1   MPQLDKFTYFTQFFWSCLFLFTFYIAICNDGDGLLGISRILKLRNQLLSHRTNNIRSKDP 60

Query: 61  NSLEDILRKGFSTGVSYMYSSLFEVSQWCNAVDLLGKRRKITLISCFGEISGSRGLERNI 120
           NSLEDILRKGFSTG+SYMYSSLFE SQWC AVDLLGKRRKITLISCFGEISGSRG+ERNI
Sbjct: 61  NSLEDILRKGFSTGLSYMYSSLFEDSQWCKAVDLLGKRRKITLISCFGEISGSRGMERNI 120

Query: 121 FYLISKSSYSTSSNPGWGIACRNDIMLIHVLHGQGSIVF 160
           FYLISKSSYSTSSNPGWGI CRNDIMLIHV HGQGSI F
Sbjct: 121 FYLISKSSYSTSSNPGWGITCRNDIMLIHVPHGQGSIGF 159

[Close]

BLAST of Lag0007271 vs. ExPASy Swiss-Prot
Match: P08746 (Putative ATP synthase protein YMF19 OS=Oenothera berteroana OX=3950 GN=YMF19 PE=3 SV=2)

HSP 1 Score: 298.5 bits (763), Expect = 4.5e-80
Identity = 142/159 (89.31%), Postives = 148/159 (93.08%), Query Frame = 0


Query: 1   MPQLDKLTYFTQFFWSCLFFFTFYIPICNDGDGVLGISRILKLRNQLVSHRGNNIRSNDP 60
           MPQLDK TYFTQFFWSCLF FTFYIPICNDGDGVLGISRILKLRNQL+SHRG NI   DP
Sbjct: 1   MPQLDKFTYFTQFFWSCLFLFTFYIPICNDGDGVLGISRILKLRNQLLSHRGKNILRKDP 60

Query: 61  NSLEDILRKGFSTGVSYMYSSLFEVSQWCNAVDLLGKRRKITLISCFGEISGSRGLERNI 120
           NSLE++LRKGFSTGVSYMYSSLFEVSQWC AVDLLGKR+KITLISCFGEIS SRG+ERNI
Sbjct: 61  NSLEELLRKGFSTGVSYMYSSLFEVSQWCKAVDLLGKRKKITLISCFGEISSSRGMERNI 120

Query: 121 FYLISKSSYSTSSNPGWGIACRNDIMLIHVLHGQGSIVF 160
           FYLISKSSYSTSSN GWG+ CRNDIMLIHV HGQGSIVF
Sbjct: 121 FYLISKSSYSTSSNLGWGVTCRNDIMLIHVPHGQGSIVF 159

[Close]

BLAST of Lag0007271 vs. ExPASy Swiss-Prot
Match: P93303 (ATP synthase protein YMF19 OS=Arabidopsis thaliana OX=3702 GN=YMF19 PE=1 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 3.2e-70
Identity = 134/160 (83.75%), Postives = 140/160 (87.50%), Query Frame = 0


Query: 1   MPQLDKLTYFTQFFWSCLFFFTFYIPICNDGDGVLGISRILKLRNQLVSHRGNNIRSNDP 60
           MPQLDK TYF+QFFW CLFFFTFYI ICNDGDGVLGISRILKLRNQL+SHRG  IRS DP
Sbjct: 1   MPQLDKFTYFSQFFWLCLFFFTFYIFICNDGDGVLGISRILKLRNQLLSHRGKTIRSKDP 60

Query: 61  NSLEDILRKGFSTGVSYMYSSLFEVSQWCNAVDLLGKRRKITLISCFGEISGSRGLERNI 120
           NSLED+LRKGFSTGVSYMY+SLFEVSQWC AVDLLGKRRKITLISCFGEISGSRG+ERNI
Sbjct: 61  NSLEDLLRKGFSTGVSYMYASLFEVSQWCKAVDLLGKRRKITLISCFGEISGSRGMERNI 120

Query: 121 FYLISKSSYSTSSNPGWGIA---CRNDIMLIHVLHGQGSI 158
            Y ISKSS    SN G  I    CRNDIMLIHV+HGQGSI
Sbjct: 121 LYNISKSS---PSNTGRWITCRNCRNDIMLIHVVHGQGSI 157

[Close]

BLAST of Lag0007271 vs. ExPASy Swiss-Prot
Match: Q03152 (Putative ATP synthase protein YMF19 OS=Brassica napus OX=3708 GN=YMF19 PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 9.3e-70
Identity = 133/160 (83.12%), Postives = 140/160 (87.50%), Query Frame = 0


Query: 1   MPQLDKLTYFTQFFWSCLFFFTFYIPICNDGDGVLGISRILKLRNQLVSHRGNNIRSNDP 60
           MPQLDK TYF+QFFW CLFFFTFYI ICNDGDGVLGISRILKLRNQL+SHRG  I+S DP
Sbjct: 1   MPQLDKFTYFSQFFWLCLFFFTFYIFICNDGDGVLGISRILKLRNQLLSHRGKTIQSKDP 60

Query: 61  NSLEDILRKGFSTGVSYMYSSLFEVSQWCNAVDLLGKRRKITLISCFGEISGSRGLERNI 120
           NSLED+LRKGFSTGVSYMY+SLFEVSQWC AVDLLGKRRKITLISCFGEISGSRG+ERNI
Sbjct: 61  NSLEDLLRKGFSTGVSYMYASLFEVSQWCKAVDLLGKRRKITLISCFGEISGSRGMERNI 120

Query: 121 FYLISKSSYSTSSNPGWGIA---CRNDIMLIHVLHGQGSI 158
            Y ISKSS    SN G  I    CRNDIMLIHV+HGQGSI
Sbjct: 121 LYNISKSS---PSNTGRWITCRNCRNDIMLIHVVHGQGSI 157

[Close]

BLAST of Lag0007271 vs. ExPASy Swiss-Prot
Match: Q06564 (Putative ATP synthase protein YMF19 OS=Raphanus sativus OX=3726 GN=YMF19 PE=3 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 2.7e-69
Identity = 132/160 (82.50%), Postives = 139/160 (86.88%), Query Frame = 0


Query: 1   MPQLDKLTYFTQFFWSCLFFFTFYIPICNDGDGVLGISRILKLRNQLVSHRGNNIRSNDP 60
           MPQLDK TYF+QFFW CLFFFTFYI ICNDGDGVLGISRILKLRNQL+SHRG  I+S DP
Sbjct: 1   MPQLDKFTYFSQFFWLCLFFFTFYIFICNDGDGVLGISRILKLRNQLLSHRGKTIQSKDP 60

Query: 61  NSLEDILRKGFSTGVSYMYSSLFEVSQWCNAVDLLGKRRKITLISCFGEISGSRGLERNI 120
           NSLED+LRKGFSTGVSYMY+SLFEVSQWC AVDLLGKRRKITLISCFGEISGSRG+ERNI
Sbjct: 61  NSLEDLLRKGFSTGVSYMYASLFEVSQWCKAVDLLGKRRKITLISCFGEISGSRGMERNI 120

Query: 121 FYLISKSSYSTSSNPGWGIA---CRNDIMLIHVLHGQGSI 158
            Y ISKSS    SN G  I    CRNDIMLIH +HGQGSI
Sbjct: 121 LYNISKSS---PSNTGRWITCRNCRNDIMLIHAVHGQGSI 157

The following BLAST results are available for this feature:

BLAST of Lag0007271 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009913617.1	1.1e-86	100.00	ATPase subunit 8 [Luffa acutangula] >QLJ93002.1 ATPase subunit 8 [Luffa acutangu...	[more]
KAF3948147.1	9.9e-85	96.86	hypothetical protein CMV_025819 [Castanea mollissima] >QIS40622.1 ATP synthase F...	[more]
XP_030965149.1	1.7e-84	96.23	uncharacterized protein LOC115986366 isoform X1 [Quercus lobata]	[more]
YP_009941507.1	3.7e-84	96.86	ATP synthase subunit 8 [Fagus sylvatica] >QOC70565.1 ATP synthase subunit 8 [Fag...	[more]
QWQ55693.1	4.9e-84	96.86	ATPase subunit 8 [Erythropalum scandens]	[more]

BLAST of Lag0007271 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P41248	5.3e-81	91.19	Putative ATP synthase protein YMF19 OS=Helianthus annuus OX=4232 GN=YMF19 PE=3 S...	[more]
P08746	4.5e-80	89.31	Putative ATP synthase protein YMF19 OS=Oenothera berteroana OX=3950 GN=YMF19 PE=...	[more]
P93303	3.2e-70	83.75	ATP synthase protein YMF19 OS=Arabidopsis thaliana OX=3702 GN=YMF19 PE=1 SV=1	[more]
Q03152	9.3e-70	83.13	Putative ATP synthase protein YMF19 OS=Brassica napus OX=3708 GN=YMF19 PE=3 SV=1	[more]
Q06564	2.7e-69	82.50	Putative ATP synthase protein YMF19 OS=Raphanus sativus OX=3726 GN=YMF19 PE=3 SV...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009455	ATP synthase YMF19, uncharacterised, C-terminal	PFAM	PF06449	DUF1082	coord: 93..143 e-value: 6.8E-34 score: 115.5
IPR003319	ATP synthase YMF19-like, N-terminal	PFAM	PF02326	YMF19	coord: 2..82 e-value: 2.9E-23 score: 82.5
IPR044975	ATP synthase protein YMF19	PANTHER	PTHR36816	ATP SYNTHASE PROTEIN YMF19	coord: 1..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0007271.1	Lag0007271.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031966	mitochondrial membrane
cellular_component	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0046961	proton-transporting ATPase activity, rotational mechanism
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism