Lag0007267 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0007267
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	NADH-ubiquinone oxidoreductase chain 3
Location	ScvUqRz_1244_HRSCAF_2115: 101088 .. 101698 (-)
RNA-Seq Expression	Lag0007267
Synteny	Lag0007267

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGGAATCCCTAGTTTTCCTCTCTGAGGGAATCTCTCCTTATCTGATTGTCGGTCTGCTTCACATGGATCCCCCGCCTCGTTTGAGTGCTGCTTTTTTCTGATCTTCATCCGGGTTCCTCAATTTCTCATTGGAATTTCTTTCATTATCTTTCACTTGATAGTGAAGGTTTCGGAATGGGCTTTTTCTTCTTTTCTTTTTCGGTATGCCGCTCCGCGATCAAGGAGCGAAAGAACCAAGTGGGCTGTGGTGATGTCAGAATTTGCACCTATTTGTATCTATTTAGTGATCAGTCCGCTAGTTTCTTTGATCCCACTCGGTGTTCCTTTTCCATTTGCTTCCAATAGTTCAACCTATCCAGAAAAATTGTCGGCCTATGAATGTGGTTTCGATCCTTCCGGTGATGCCAGAAGTCGTTTCGATATACGATTTTATCTTGTTTCCATTTTATTTATTATCCTTGATCCGGAAGTAACCTTTTCCTTTCCTTGGGCAGTACCTCTCAACAAGATTGATCTGTTTGGATCTTGGTCCATGATGGCCTTTTTATTGATTTTGACGATTGGATTTCTCTATGAATGGAAAAGGGGTGCTTCGGATCGGGAGTAA

mRNA sequence

ATGCGGGAATCCCTAGTTTTCCTCTCTGAGGGAATCTCTCCTTATCTGATTGTCGTGAAGGTTTCGGAATGGGCTTTTTCTTCTTTTCTTTTTCGGTATGCCGCTCCGCGATCAAGGAGCGAAAGAACCAAGTGGGCTGTGGTGATGTCAGAATTTGCACCTATTTGTATCTATTTAGTGATCAGTCCGCTAGTTTCTTTGATCCCACTCGGTGTTCCTTTTCCATTTGCTTCCAATAGTTCAACCTATCCAGAAAAATTGTCGGCCTATGAATGTGGTTTCGATCCTTCCGGTGATGCCAGAAGTCGTTTCGATATACGATTTTATCTTGTTTCCATTTTATTTATTATCCTTGATCCGGAAGTAACCTTTTCCTTTCCTTGGGCAGTACCTCTCAACAAGATTGATCTGTTTGGATCTTGGTCCATGATGGCCTTTTTATTGATTTTGACGATTGGATTTCTCTATGAATGGAAAAGGGGTGCTTCGGATCGGGAGTAA

Coding sequence (CDS)

ATGCGGGAATCCCTAGTTTTCCTCTCTGAGGGAATCTCTCCTTATCTGATTGTCGTGAAGGTTTCGGAATGGGCTTTTTCTTCTTTTCTTTTTCGGTATGCCGCTCCGCGATCAAGGAGCGAAAGAACCAAGTGGGCTGTGGTGATGTCAGAATTTGCACCTATTTGTATCTATTTAGTGATCAGTCCGCTAGTTTCTTTGATCCCACTCGGTGTTCCTTTTCCATTTGCTTCCAATAGTTCAACCTATCCAGAAAAATTGTCGGCCTATGAATGTGGTTTCGATCCTTCCGGTGATGCCAGAAGTCGTTTCGATATACGATTTTATCTTGTTTCCATTTTATTTATTATCCTTGATCCGGAAGTAACCTTTTCCTTTCCTTGGGCAGTACCTCTCAACAAGATTGATCTGTTTGGATCTTGGTCCATGATGGCCTTTTTATTGATTTTGACGATTGGATTTCTCTATGAATGGAAAAGGGGTGCTTCGGATCGGGAGTAA

Protein sequence

MRESLVFLSEGISPYLIVVKVSEWAFSSFLFRYAAPRSRSERTKWAVVMSEFAPICIYLVISPLVSLIPLGVPFPFASNSSTYPEKLSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFSFPWAVPLNKIDLFGSWSMMAFLLILTIGFLYEWKRGASDRE

Homology

[Close]

BLAST of Lag0007267 vs. NCBI nr
Match: GEV07194.1 (NADH dehydrogenase subunit 3, mitochondrial [Tanacetum cinerariifolium])

HSP 1 Score: 262.7 bits (670), Expect = 2.2e-66
Identity = 129/136 (94.85%), Postives = 131/136 (96.32%), Query Frame = 0


Query: 31   FRYAAPRSRSERTKWAVVMSEFAPICIYLVISPLVSLIPLGVPFPFASNSSTYPEKLSAY 90
            FRYAAPR+RSE+TKWAVVMSEFAPICIYLVISPLVSLIPLGVPFPFASNSSTYPEKLSAY
Sbjct: 1073 FRYAAPRARSEKTKWAVVMSEFAPICIYLVISPLVSLIPLGVPFPFASNSSTYPEKLSAY 1132

Query: 91   ECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFSFPWAVPLNKIDLFGSWSMMAFLLIL 150
            ECGFDP GDARSRFDIRFYLVSILFII DPEVTFSFPWAVP NKID FGSWSMMAFLLIL
Sbjct: 1133 ECGFDPFGDARSRFDIRFYLVSILFIIPDPEVTFSFPWAVPPNKIDPFGSWSMMAFLLIL 1192

Query: 151  TIGFLYEWKRGASDRE 167
            TIG LYEWKRGASDRE
Sbjct: 1193 TIGSLYEWKRGASDRE 1208

[Close]

BLAST of Lag0007267 vs. NCBI nr
Match: XP_019074203.1 (PREDICTED: uncharacterized protein LOC104878538 [Vitis vinifera])

HSP 1 Score: 259.2 bits (661), Expect = 2.4e-65
Identity = 130/144 (90.28%), Postives = 132/144 (91.67%), Query Frame = 0


Query: 24  WAFSS-FLFRYAAPRSRSERTKWAVVMSEFAPICIYLVISPLVSLIPLGVPFPFASNSST 83
           W  SS   FRY A R+RSERTKWA+VMSEFAPICIYLVISPLVSLIPLGVPFPFASNSST
Sbjct: 4   WVLSSNTFFRYVALRARSERTKWAMVMSEFAPICIYLVISPLVSLIPLGVPFPFASNSST 63

Query: 84  YPEKLSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFSFPWAVPLNKIDLFGSWS 143
           YPEKLSAYECGFDP GDARSRFDIRFYLVSILFII DPEVTFSFPWAVP NKID FGSWS
Sbjct: 64  YPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIPDPEVTFSFPWAVPPNKIDPFGSWS 123

Query: 144 MMAFLLILTIGFLYEWKRGASDRE 167
           MMAFLLILTIG LYEWKRGASDRE
Sbjct: 124 MMAFLLILTIGSLYEWKRGASDRE 147

[Close]

BLAST of Lag0007267 vs. NCBI nr
Match: KAG7025767.1 (NADH-ubiquinone oxidoreductase chain 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 259.2 bits (661), Expect = 2.4e-65
Identity = 134/159 (84.28%), Postives = 139/159 (87.42%), Query Frame = 0


Query: 9   SEGISPYLIVVKVSEWAFSSFLFRYAAPRSRSERT-KWAVVMSEFAPICIYLVISPLVSL 68
           SE I     + +VS+WAFSSFLFRYAAPRSRSERT KW VVMSEF PI IYLVI  LVSL
Sbjct: 16  SERIGALRSMSRVSKWAFSSFLFRYAAPRSRSERTNKWVVVMSEFVPIYIYLVIILLVSL 75

Query: 69  IPLGVPFPFASNSSTYPEKLSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFSFP 128
           IPLG+PFPFASNSSTY EKLS YECGF PS DARSRF+IRFYLVSILFIILD EVTFSFP
Sbjct: 76  IPLGLPFPFASNSSTYLEKLSTYECGFIPSSDARSRFNIRFYLVSILFIILDLEVTFSFP 135

Query: 129 WAVPLNKIDLFGSWSMMAFLLILTIGFLYEWKRGASDRE 167
           WAVPLNKIDLFGSWSMMAFL ILTIGFLYEWKRGA DRE
Sbjct: 136 WAVPLNKIDLFGSWSMMAFLFILTIGFLYEWKRGALDRE 174

[Close]

BLAST of Lag0007267 vs. NCBI nr
Match: CAB4075863.1 (unnamed protein product [Lactuca saligna] >CAB4076136.1 unnamed protein product [Lactuca saligna] >CAB4076252.1 unnamed protein product [Lactuca saligna] >CAB4076288.1 unnamed protein product [Lactuca saligna] >CAB4076627.1 unnamed protein product [Lactuca saligna])

HSP 1 Score: 258.5 bits (659), Expect = 4.1e-65
Identity = 128/136 (94.12%), Postives = 130/136 (95.59%), Query Frame = 0


Query: 31  FRYAAPRSRSERTKWAVVMSEFAPICIYLVISPLVSLIPLGVPFPFASNSSTYPEKLSAY 90
           FRYAAPR+RSE+TKWAVVMSEFAPI IYLVISPLVSLIPLGVPFPFASNSSTYPEKLSAY
Sbjct: 74  FRYAAPRARSEKTKWAVVMSEFAPIFIYLVISPLVSLIPLGVPFPFASNSSTYPEKLSAY 133

Query: 91  ECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFSFPWAVPLNKIDLFGSWSMMAFLLIL 150
           ECGFDP GDARSRFDIRFYLVSILFII DPEVTFSFPWAVP NKID FGSWSMMAFLLIL
Sbjct: 134 ECGFDPFGDARSRFDIRFYLVSILFIIPDPEVTFSFPWAVPPNKIDPFGSWSMMAFLLIL 193

Query: 151 TIGFLYEWKRGASDRE 167
           TIG LYEWKRGASDRE
Sbjct: 194 TIGSLYEWKRGASDRE 209

[Close]

BLAST of Lag0007267 vs. NCBI nr
Match: KAF1863087.1 (hypothetical protein Lal_00041074 [Lupinus albus])

HSP 1 Score: 256.9 bits (655), Expect = 1.2e-64
Identity = 131/170 (77.06%), Postives = 141/170 (82.94%), Query Frame = 0


Query: 2   RESLVFLSEGISPYLIVVKVSE-----WAFSSFLFRYAAPRSRSERTKWAVVMSEFAPIC 61
           ++ +++L+ GI P L+   V       +      F YAAPR+RSERTKW VVMSEFAPIC
Sbjct: 99  KKLVIWLTSGIRPLLVFELVINGRLHWYPLFIIFFWYAAPRARSERTKWVVVMSEFAPIC 158

Query: 62  IYLVISPLVSLIPLGVPFPFASNSSTYPEKLSAYECGFDPSGDARSRFDIRFYLVSILFI 121
           IYLVIS LVSLIPLG+PFPFASNSSTYPEKLSAYECGFDP GDARSRFDIRFYLVSILFI
Sbjct: 159 IYLVISLLVSLIPLGLPFPFASNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFI 218

Query: 122 ILDPEVTFSFPWAVPLNKIDLFGSWSMMAFLLILTIGFLYEWKRGASDRE 167
           I DPEVTFSFPWAVP NKID FGSWSMMAFL ILTIG LYEWKRGASDRE
Sbjct: 219 IPDPEVTFSFPWAVPPNKIDPFGSWSMMAFLFILTIGSLYEWKRGASDRE 268

[Close]

BLAST of Lag0007267 vs. ExPASy Swiss-Prot
Match: P27062 (NADH-ubiquinone oxidoreductase chain 3 OS=Panax ginseng OX=4054 GN=ND3 PE=3 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 2.9e-58
Identity = 112/118 (94.92%), Postives = 113/118 (95.76%), Query Frame = 0


Query: 49  MSEFAPICIYLVISPLVSLIPLGVPFPFASNSSTYPEKLSAYECGFDPSGDARSRFDIRF 108
           MSEFAPICIYLVIS LVSLIPLGVPFPFASNSSTYP+KLSAYECGFDPSGDARSRFDIRF
Sbjct: 1   MSEFAPICIYLVISLLVSLIPLGVPFPFASNSSTYPDKLSAYECGFDPSGDARSRFDIRF 60

Query: 109 YLVSILFIILDPEVTFSFPWAVPLNKIDLFGSWSMMAFLLILTIGFLYEWKRGASDRE 167
           YLVSILFII DPEVTFSFPWAVP NKID FGSWSMMAFLLILTIG LYEWKRGASDRE
Sbjct: 61  YLVSILFIIPDPEVTFSFPWAVPPNKIDPFGSWSMMAFLLILTIGSLYEWKRGASDRE 118

[Close]

BLAST of Lag0007267 vs. ExPASy Swiss-Prot
Match: O99869 (NADH-ubiquinone oxidoreductase chain 3 OS=Solanum tuberosum OX=4113 GN=ND3 PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.0e-55
Identity = 108/118 (91.53%), Postives = 110/118 (93.22%), Query Frame = 0


Query: 49  MSEFAPICIYLVISPLVSLIPLGVPFPFASNSSTYPEKLSAYECGFDPSGDARSRFDIRF 108
           MSEFAPICIYLVISPLVSLIPLG+PF F+SNSSTYPEK SAYECG DPSGDARSR DIRF
Sbjct: 1   MSEFAPICIYLVISPLVSLIPLGLPFLFSSNSSTYPEKSSAYECGLDPSGDARSRVDIRF 60

Query: 109 YLVSILFIILDPEVTFSFPWAVPLNKIDLFGSWSMMAFLLILTIGFLYEWKRGASDRE 167
           YLVSILFII DPEVTFSFPWAVP NKID FGSWSMMAFLLILTIG LYEWKRGASDRE
Sbjct: 61  YLVSILFIIPDPEVTFSFPWAVPPNKIDPFGSWSMMAFLLILTIGSLYEWKRGASDRE 118

[Close]

BLAST of Lag0007267 vs. ExPASy Swiss-Prot
Match: P60159 (NADH-ubiquinone oxidoreductase chain 3 OS=Helianthus annuus OX=4232 GN=ND3 PE=2 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.1e-52
Identity = 106/118 (89.83%), Postives = 106/118 (89.83%), Query Frame = 0


Query: 49  MSEFAPICIYLVISPLVSLIPLGVPFPFASNSSTYPEKLSAYECGFDPSGDARSRFDIRF 108
           M EFAPICIYLVIS LVSLI LGVPF FASNSSTYPEKLSAYECGFDP GDARSRFDIRF
Sbjct: 1   MLEFAPICIYLVISLLVSLILLGVPFLFASNSSTYPEKLSAYECGFDPFGDARSRFDIRF 60

Query: 109 YLVSILFIILDPEVTFSFPWAVPLNKIDLFGSWSMMAFLLILTIGFLYEWKRGASDRE 167
           YLVSILFII D EVTF FPWAV LNKIDLFG WSMMAFLLILTIGFLYEWKRGA D E
Sbjct: 61  YLVSILFIIFDLEVTFFFPWAVSLNKIDLFGFWSMMAFLLILTIGFLYEWKRGALDWE 118

[Close]

BLAST of Lag0007267 vs. ExPASy Swiss-Prot
Match: Q36664 (NADH-ubiquinone oxidoreductase chain 3 OS=Pinus sylvestris OX=3349 GN=NAD3 PE=2 SV=2)

HSP 1 Score: 207.6 bits (527), Expect = 1.1e-52
Identity = 104/118 (88.14%), Postives = 105/118 (88.98%), Query Frame = 0


Query: 49  MSEFAPICIYLVISPLVSLIPLGVPFPFASNSSTYPEKLSAYECGFDPSGDARSRFDIRF 108
           MSEFAPICIYLVIS LV LIPLGVPF FASN STYPEKLSAYECGFDP GDARSRFDIRF
Sbjct: 1   MSEFAPICIYLVISLLVCLIPLGVPFLFASNGSTYPEKLSAYECGFDPFGDARSRFDIRF 60

Query: 109 YLVSILFIILDPEVTFSFPWAVPLNKIDLFGSWSMMAFLLILTIGFLYEWKRGASDRE 167
           YLVSILFII D EVTF FPWAV LNKIDLFG WSMM FLLILTIGFLYEWK+GA D E
Sbjct: 61  YLVSILFIIFDLEVTFFFPWAVSLNKIDLFGFWSMMVFLLILTIGFLYEWKKGALDWE 118

[Close]

BLAST of Lag0007267 vs. ExPASy Swiss-Prot
Match: P60160 (NADH-ubiquinone oxidoreductase chain 3 OS=Triticum aestivum OX=4565 GN=ND3 PE=2 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.1e-52
Identity = 106/118 (89.83%), Postives = 106/118 (89.83%), Query Frame = 0


Query: 49  MSEFAPICIYLVISPLVSLIPLGVPFPFASNSSTYPEKLSAYECGFDPSGDARSRFDIRF 108
           M EFAPICIYLVIS LVSLI LGVPF FASNSSTYPEKLSAYECGFDP GDARSRFDIRF
Sbjct: 1   MLEFAPICIYLVISLLVSLILLGVPFLFASNSSTYPEKLSAYECGFDPFGDARSRFDIRF 60

Query: 109 YLVSILFIILDPEVTFSFPWAVPLNKIDLFGSWSMMAFLLILTIGFLYEWKRGASDRE 167
           YLVSILFII D EVTF FPWAV LNKIDLFG WSMMAFLLILTIGFLYEWKRGA D E
Sbjct: 61  YLVSILFIIFDLEVTFFFPWAVSLNKIDLFGFWSMMAFLLILTIGFLYEWKRGALDWE 118

The following BLAST results are available for this feature:

BLAST of Lag0007267 vs. NCBI nr


Match Name	E-value	Identity	Description
GEV07194.1	2.2e-66	94.85	NADH dehydrogenase subunit 3, mitochondrial [Tanacetum cinerariifolium]	[more]
XP_019074203.1	2.4e-65	90.28	PREDICTED: uncharacterized protein LOC104878538 [Vitis vinifera]	[more]
KAG7025767.1	2.4e-65	84.28	NADH-ubiquinone oxidoreductase chain 3, partial [Cucurbita argyrosperma subsp. a...	[more]
CAB4075863.1	4.1e-65	94.12	unnamed protein product [Lactuca saligna] >CAB4076136.1 unnamed protein product ...	[more]
KAF1863087.1	1.2e-64	77.06	hypothetical protein Lal_00041074 [Lupinus albus]	[more]

BLAST of Lag0007267 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27062	2.9e-58	94.92	NADH-ubiquinone oxidoreductase chain 3 OS=Panax ginseng OX=4054 GN=ND3 PE=3 SV=1	[more]
O99869	1.0e-55	91.53	NADH-ubiquinone oxidoreductase chain 3 OS=Solanum tuberosum OX=4113 GN=ND3 PE=3 ...	[more]
P60159	1.1e-52	89.83	NADH-ubiquinone oxidoreductase chain 3 OS=Helianthus annuus OX=4232 GN=ND3 PE=2 ...	[more]
Q36664	1.1e-52	88.14	NADH-ubiquinone oxidoreductase chain 3 OS=Pinus sylvestris OX=3349 GN=NAD3 PE=2 ...	[more]
P60160	1.1e-52	89.83	NADH-ubiquinone oxidoreductase chain 3 OS=Triticum aestivum OX=4565 GN=ND3 PE=2 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038430	NADH:ubiquinone oxidoreductase, subunit 3 superfamily	GENE3D	1.20.58.1610	NADH:ubiquinone/plastoquinone oxidoreductase, chain 3	coord: 35..164 e-value: 7.4E-39 score: 134.5
IPR000440	NADH:ubiquinone/plastoquinone oxidoreductase, chain 3	PFAM	PF00507	Oxidored_q4	coord: 78..162 e-value: 3.7E-30 score: 104.0
IPR000440	NADH:ubiquinone/plastoquinone oxidoreductase, chain 3	PANTHER	PTHR11058	NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 3	coord: 49..166
None	No IPR available	PANTHER	PTHR11058:SF19	NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 3	coord: 49..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0007267.1	Lag0007267.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031966	mitochondrial membrane
cellular_component	GO:0070469	respirasome
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0048038	quinone binding