Lag0006922 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0006922
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionzinc finger Ran-binding domain-containing protein 2-like
Locationchr6: 47140310 .. 47141023 (+)
RNA-Seq ExpressionLag0006922
SyntenyLag0006922
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACATGAATTGGTCAGGAGGTGACTGGATGTGTGGTGTGTGTGAACATGTGAACTTCAAAAAGAGAGAAGCTTGTCAACGATGTGGGTACCCGAAATATGGTGGTCCAGACCCAACAACCTACGAGTACAACAAAACAGAAGTCCTAGCAGGAGATTGGTATTGCAATTGTGGAGCTCACAACTACGCCAGTAGGTCAAGTTGCTATAGATGTAATTCATATAAGAGTGTCGATATTGGTGCCTTGCCTGGTTGGAAATCTGGAGATTGGATCTGCAATAGGTAAGTGTTCTTCATTTCATGATATATCTGTTAGCGTTTCTTCAAATCATCTACATTTTCAACCATGTCTTTTTTTAAAAAAAAATTGTTGAATTTGTGCAGAATAGGATGTGAAACACACAATTATGCTAGCAGGATGGAATGCTACAAATGCAAAACTCCAAGGGATTTTGGTAAGACGATCAGATTTTTTAGACTATATAAATATACGATTGTATTAAACATTTTGATTTTCAAATATATATGATGTTTAGTTCACCATAAATATCTGAACATATATAGAGTTAAACATGTTGAGAGTAGGGGTTCAGACTTCTGACCTTTTGACCAATATTATAATGTCTTAACCCTAATCGTTTAACTATATGCTCGAGCCCATTATAACTCATAATTGATATATACATTTCTTTTAACAGGTGGAGCTGTTTGA

mRNA sequence

ATGAACATGAATTGGTCAGGAGGTGACTGGATGTGTGGTGTGTGTGAACATGTGAACTTCAAAAAGAGAGAAGCTTGTCAACGATGTGGGTACCCGAAATATGGTGGTCCAGACCCAACAACCTACGAGTACAACAAAACAGAAGTCCTAGCAGGAGATTGGTATTGCAATTGTGGAGCTCACAACTACGCCAGTAGGTCAAGTTGCTATAGATGTAATTCATATAAGAGTGTCGATATTGGTGCCTTGCCTGGTTGGAAATCTGGAGATTGGATCTGCAATAGAATAGGATGTGAAACACACAATTATGCTAGCAGGATGGAATGCTACAAATGCAAAACTCCAAGGGATTTTGGTGGAGCTGTTTGA

Coding sequence (CDS)

ATGAACATGAATTGGTCAGGAGGTGACTGGATGTGTGGTGTGTGTGAACATGTGAACTTCAAAAAGAGAGAAGCTTGTCAACGATGTGGGTACCCGAAATATGGTGGTCCAGACCCAACAACCTACGAGTACAACAAAACAGAAGTCCTAGCAGGAGATTGGTATTGCAATTGTGGAGCTCACAACTACGCCAGTAGGTCAAGTTGCTATAGATGTAATTCATATAAGAGTGTCGATATTGGTGCCTTGCCTGGTTGGAAATCTGGAGATTGGATCTGCAATAGAATAGGATGTGAAACACACAATTATGCTAGCAGGATGGAATGCTACAAATGCAAAACTCCAAGGGATTTTGGTGGAGCTGTTTGA

Protein sequence

MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYNKTEVLAGDWYCNCGAHNYASRSSCYRCNSYKSVDIGALPGWKSGDWICNRIGCETHNYASRMECYKCKTPRDFGGAV
Homology
BLAST of Lag0006922 vs. NCBI nr
Match: XP_022966014.1 (zinc finger Ran-binding domain-containing protein 2-like [Cucurbita maxima])

HSP 1 Score: 284.6 bits (727), Expect = 3.9e-73
Identity = 118/122 (96.72%), Postives = 121/122 (99.18%), Query Frame = 0

Query: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYNKTEVLAGDWYCNCGA 60
           MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYE+NKTEVLAGDWYC+CGA
Sbjct: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEFNKTEVLAGDWYCHCGA 60

Query: 61  HNYASRSSCYRCNSYKSVDIGALPGWKSGDWICNRIGCETHNYASRMECYKCKTPRDFGG 120
           HNYASRSSCYRCN+YKS DIGALPGWKSGDWICNRIGCETHNYASRMECYKCKTPRDFGG
Sbjct: 61  HNYASRSSCYRCNAYKSADIGALPGWKSGDWICNRIGCETHNYASRMECYKCKTPRDFGG 120

Query: 121 AV 123
           AV
Sbjct: 121 AV 122

BLAST of Lag0006922 vs. NCBI nr
Match: XP_023538268.1 (zinc finger Ran-binding domain-containing protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 283.1 bits (723), Expect = 1.1e-72
Identity = 117/122 (95.90%), Postives = 121/122 (99.18%), Query Frame = 0

Query: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYNKTEVLAGDWYCNCGA 60
           MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDP+TYE+NKTEVLAGDWYC+CGA
Sbjct: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYEFNKTEVLAGDWYCHCGA 60

Query: 61  HNYASRSSCYRCNSYKSVDIGALPGWKSGDWICNRIGCETHNYASRMECYKCKTPRDFGG 120
           HNYASRSSCYRCN+YKS DIGALPGWKSGDWICNRIGCETHNYASRMECYKCKTPRDFGG
Sbjct: 61  HNYASRSSCYRCNAYKSADIGALPGWKSGDWICNRIGCETHNYASRMECYKCKTPRDFGG 120

Query: 121 AV 123
           AV
Sbjct: 121 AV 122

BLAST of Lag0006922 vs. NCBI nr
Match: KAG6586405.1 (hypothetical protein SDJN03_19138, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 280.8 bits (717), Expect = 5.6e-72
Identity = 116/122 (95.08%), Postives = 120/122 (98.36%), Query Frame = 0

Query: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYNKTEVLAGDWYCNCGA 60
           MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDP+TYE+NKTEVLAGDWYC+CGA
Sbjct: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYEFNKTEVLAGDWYCHCGA 60

Query: 61  HNYASRSSCYRCNSYKSVDIGALPGWKSGDWICNRIGCETHNYASRMECYKCKTPRDFGG 120
           HNYASR SCYRCN+YKS DIGALPGWKSGDWICNRIGCETHNYASRMECYKCKTPRDFGG
Sbjct: 61  HNYASRLSCYRCNAYKSADIGALPGWKSGDWICNRIGCETHNYASRMECYKCKTPRDFGG 120

Query: 121 AV 123
           AV
Sbjct: 121 AV 122

BLAST of Lag0006922 vs. NCBI nr
Match: XP_022937997.1 (zinc finger Ran-binding domain-containing protein 2-like [Cucurbita moschata])

HSP 1 Score: 277.7 bits (709), Expect = 4.8e-71
Identity = 115/122 (94.26%), Postives = 120/122 (98.36%), Query Frame = 0

Query: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYNKTEVLAGDWYCNCGA 60
           MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDP+TYE+NKTEVLAGDWYC+CGA
Sbjct: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYEFNKTEVLAGDWYCHCGA 60

Query: 61  HNYASRSSCYRCNSYKSVDIGALPGWKSGDWICNRIGCETHNYASRMECYKCKTPRDFGG 120
           HNYASRSSCYRCN+YKS DI ALPGWKSGDWICNRIGCETHNYASRMECYKCKTPR+FGG
Sbjct: 61  HNYASRSSCYRCNAYKSADICALPGWKSGDWICNRIGCETHNYASRMECYKCKTPRNFGG 120

Query: 121 AV 123
           AV
Sbjct: 121 AV 122

BLAST of Lag0006922 vs. NCBI nr
Match: XP_008457786.1 (PREDICTED: uncharacterized RNA-binding protein C17H9.04c [Cucumis melo] >XP_008457794.1 PREDICTED: uncharacterized RNA-binding protein C17H9.04c [Cucumis melo])

HSP 1 Score: 264.2 bits (674), Expect = 5.4e-67
Identity = 116/131 (88.55%), Postives = 120/131 (91.60%), Query Frame = 0

Query: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTY-EYN------KTEVLAGD 60
           MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDP+TY +YN        EVLAGD
Sbjct: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYDQYNIIHSKSTDEVLAGD 60

Query: 61  WYCNCGAHNYASRSSCYRCNS--YKSVDIGALPGWKSGDWICNRIGCETHNYASRMECYK 120
           WYCNCGAHNYASRSSCYRCNS  YKS+DIGALPGWKSGDWIC+RIGCETHNYASRMECYK
Sbjct: 61  WYCNCGAHNYASRSSCYRCNSNAYKSLDIGALPGWKSGDWICSRIGCETHNYASRMECYK 120

Query: 121 CKTPRDFGGAV 123
           CKTPRDFGGAV
Sbjct: 121 CKTPRDFGGAV 131

BLAST of Lag0006922 vs. ExPASy Swiss-Prot
Match: Q5ZLX5 (Zinc finger Ran-binding domain-containing protein 2 OS=Gallus gallus OX=9031 GN=ZRANB2 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.6e-08
Identity = 36/101 (35.64%), Postives = 47/101 (46.53%), Query Frame = 0

Query: 2   NMNWSGGDWMC--GVCEHVNFKKREACQRCG--------YPKYGGPD--PTTYEYNKTEV 61
           N   S GDW+C    C +VNF +R +C RCG          K GG +   T  E ++   
Sbjct: 5   NFRVSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKSRGLF 64

Query: 62  LAGDWYC-NCGAHNYASRSSCYRCNSYKSVDIGALPGWKSG 90
            A DW C  CG  N+A RS C  CN+ K   +    G+  G
Sbjct: 65  SANDWQCKTCGNVNWARRSECNMCNTPKYAKLEERTGYGGG 105

BLAST of Lag0006922 vs. ExPASy Swiss-Prot
Match: O95218 (Zinc finger Ran-binding domain-containing protein 2 OS=Homo sapiens OX=9606 GN=ZRANB2 PE=1 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 2.3e-07
Identity = 35/101 (34.65%), Postives = 46/101 (45.54%), Query Frame = 0

Query: 2   NMNWSGGDWMC--GVCEHVNFKKREACQRCG--------YPKYGGPD--PTTYEYNKTEV 61
           N   S GDW+C    C +VNF +R +C RCG          K GG +   T  E ++   
Sbjct: 5   NFRVSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKSRGLF 64

Query: 62  LAGDWYC-NCGAHNYASRSSCYRCNSYKSVDIGALPGWKSG 90
            A DW C  C   N+A RS C  CN+ K   +    G+  G
Sbjct: 65  SANDWQCKTCSNVNWARRSECNMCNTPKYAKLEERTGYGGG 105

BLAST of Lag0006922 vs. ExPASy Swiss-Prot
Match: Q9R020 (Zinc finger Ran-binding domain-containing protein 2 OS=Mus musculus OX=10090 GN=Zranb2 PE=1 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 2.3e-07
Identity = 35/101 (34.65%), Postives = 46/101 (45.54%), Query Frame = 0

Query: 2   NMNWSGGDWMC--GVCEHVNFKKREACQRCG--------YPKYGGPD--PTTYEYNKTEV 61
           N   S GDW+C    C +VNF +R +C RCG          K GG +   T  E ++   
Sbjct: 5   NFRVSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKSRGLF 64

Query: 62  LAGDWYC-NCGAHNYASRSSCYRCNSYKSVDIGALPGWKSG 90
            A DW C  C   N+A RS C  CN+ K   +    G+  G
Sbjct: 65  SANDWQCKTCSNVNWARRSECNMCNTPKYAKLEERTGYGGG 105

BLAST of Lag0006922 vs. ExPASy Swiss-Prot
Match: Q19QU3 (Zinc finger Ran-binding domain-containing protein 2 OS=Sus scrofa OX=9823 GN=ZRANB2 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.3e-07
Identity = 35/101 (34.65%), Postives = 46/101 (45.54%), Query Frame = 0

Query: 2   NMNWSGGDWMC--GVCEHVNFKKREACQRCG--------YPKYGGPD--PTTYEYNKTEV 61
           N   S GDW+C    C +VNF +R +C RCG          K GG +   T  E ++   
Sbjct: 5   NFRVSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKSRGLF 64

Query: 62  LAGDWYC-NCGAHNYASRSSCYRCNSYKSVDIGALPGWKSG 90
            A DW C  C   N+A RS C  CN+ K   +    G+  G
Sbjct: 65  SANDWQCKTCSNVNWARRSECNMCNTPKYAKLEERTGYGGG 105

BLAST of Lag0006922 vs. ExPASy Swiss-Prot
Match: Q5R580 (Zinc finger Ran-binding domain-containing protein 2 OS=Pongo abelii OX=9601 GN=ZRANB2 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.3e-07
Identity = 35/101 (34.65%), Postives = 46/101 (45.54%), Query Frame = 0

Query: 2   NMNWSGGDWMC--GVCEHVNFKKREACQRCG--------YPKYGGPD--PTTYEYNKTEV 61
           N   S GDW+C    C +VNF +R +C RCG          K GG +   T  E ++   
Sbjct: 5   NFRVSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKSRGLF 64

Query: 62  LAGDWYC-NCGAHNYASRSSCYRCNSYKSVDIGALPGWKSG 90
            A DW C  C   N+A RS C  CN+ K   +    G+  G
Sbjct: 65  SANDWQCKTCSNVNWARRSECNMCNTPKYAKLEERTGYGGG 105

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022966014.13.9e-7396.72zinc finger Ran-binding domain-containing protein 2-like [Cucurbita maxima][more]
XP_023538268.11.1e-7295.90zinc finger Ran-binding domain-containing protein 2-like [Cucurbita pepo subsp. ... [more]
KAG6586405.15.6e-7295.08hypothetical protein SDJN03_19138, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022937997.14.8e-7194.26zinc finger Ran-binding domain-containing protein 2-like [Cucurbita moschata][more]
XP_008457786.15.4e-6788.55PREDICTED: uncharacterized RNA-binding protein C17H9.04c [Cucumis melo] >XP_0084... [more]
Match NameE-valueIdentityDescription
Q5ZLX54.6e-0835.64Zinc finger Ran-binding domain-containing protein 2 OS=Gallus gallus OX=9031 GN=... [more]
O952182.3e-0734.65Zinc finger Ran-binding domain-containing protein 2 OS=Homo sapiens OX=9606 GN=Z... [more]
Q9R0202.3e-0734.65Zinc finger Ran-binding domain-containing protein 2 OS=Mus musculus OX=10090 GN=... [more]
Q19QU32.3e-0734.65Zinc finger Ran-binding domain-containing protein 2 OS=Sus scrofa OX=9823 GN=ZRA... [more]
Q5R5802.3e-0734.65Zinc finger Ran-binding domain-containing protein 2 OS=Pongo abelii OX=9601 GN=Z... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001876Zinc finger, RanBP2-typeSMARTSM00547zf_4coord: 8..32
e-value: 4.3E-6
score: 36.2
coord: 89..115
e-value: 1.0E-5
score: 35.0
coord: 52..75
e-value: 1.7E-4
score: 30.9
IPR001876Zinc finger, RanBP2-typePFAMPF00641zf-RanBPcoord: 8..34
e-value: 2.8E-4
score: 20.1
coord: 51..76
e-value: 0.0022
score: 17.3
coord: 87..116
e-value: 7.1E-8
score: 31.6
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 91..112
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 10..29
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 87..118
score: 9.687219
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 6..35
score: 8.817719
NoneNo IPR availableGENE3D4.10.1060.10coord: 42..78
e-value: 6.5E-10
score: 40.1
coord: 84..118
e-value: 1.5E-10
score: 42.1
coord: 1..37
e-value: 6.8E-10
score: 40.1
NoneNo IPR availablePANTHERPTHR23111ZINC FINGER PROTEINcoord: 2..119
NoneNo IPR availablePANTHERPTHR23111:SF41ZINC FINGER, RANBP2-TYPE-RELATEDcoord: 2..119
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILY90209Ran binding protein zinc finger-likecoord: 2..36
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILY90209Ran binding protein zinc finger-likecoord: 86..118
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILY90209Ran binding protein zinc finger-likecoord: 45..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0006922.1Lag0006922.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding