Lag0006269 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0006269
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	chr6: 40322243 .. 40323076 (-)
RNA-Seq Expression	Lag0006269
Synteny	Lag0006269

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGATGATAGTTGGTTCGACGGACGAAGATTTGTCTCGGAATGGGGCAGTTGGCGCTGGAGTTGCCGCAGCTGCTGCAGAACATGCGACCAGAGCCGGAGCAGGTCCGACAGCCAATGTCACCGTCAGACCAGCGGGAGCAGAGGCAAGGGACTCGACCGGTGCTGTTGCAGGAGAGGCAGCGGGGGAAGGAACCGGCCATGGGCTTTTAGTCCATGACCGATTTGATGAGAACGGCGCCGGCGAGGACGCTGAGGGGGTGGCGAGCTGGGTGAGGACGATCCGAACCATGGCTGAAAGATTAGAGAGAAAGAGAAATGAGAGATGGGAGAAGAGAGAAGGGAAATGGAAGGGAGATTTTTTGGGGGGCGATATTGATTTTTATTTTAAAAAAATGAGAAAAGAAAGGGGGAATCAGAGAAAATAGAAGTGGTGAGAAGGAAGAACACGTAGGCGAAGGAGGTGTTGGTGGCTTTGAGAGAAGAAGAAGAAGTAATTGTTTGGGCAAAATTGGAGTTTTGTGGAGTTGCTATTGCGTGGGTGTCTTCCTTGCTTCCATCTCTCTCTTTCTCTTTCCTATTTCCTTTGTGGAAAACAGAGGGGGGCGTCGGAAAACGGAGGCTTCCTCTTTCAGTTAAAAATAAAAAAAAATAAAAAAGAAGCAGCTGAAGCTTCGAGGAAGGAAAGAAGAAGAAGAAAAGAAGGAAAAAAATATGGCGGCTGCCGCCGCTATTCGCCGGCAGTCGGCGGCGGCCGGCCACCGGAGTTAAAGAAGAAGAAGATGGGGAAGAAGGAAGATGGAGATGGGGAAGAGAAAGGAGAAGGAGAATAG

mRNA sequence

ATGGGGATGATAGTTGGTTCGACGGACGAAGATTTGTCTCGGAATGGGGCAGTTGGCGCTGGAGTTGCCGCAGCTGCTGCAGAACATGCGACCAGAGCCGGAGCAGGTCCGACAGCCAATGTCACCGTCAGACCAGCGGGAGCAGAGGCAAGGGACTCGACCGGTGCTGTTGCAGGAGAGGCAGCGGGGGAAGGAACCGGCCATGGGCTTTTAGTCCATGACCGATTTGATGAGAACGGCGCCGGCGAGGACGCTGAGGGGGTGGCGAGCTGGAGGGGGGCGTCGGAAAACGGAGGCTTCCTCTTTCAGTTAAAAATAAAAAAAAATAAAAAAGAAGCAGCTGAAGCTTCGAGGAAGGAAAGAAGAAGAAGAAAAGAAGGAAAAAAATATGGCGGCTGCCGCCGCTATTCGCCGGCAGTCGGCGGCGGCCGGCCACCGGAGTTAAAGAAGAAGAAGATGGGGAAGAAGGAAGATGGAGATGGGGAAGAGAAAGGAGAAGGAGAATAG

Coding sequence (CDS)

ATGGGGATGATAGTTGGTTCGACGGACGAAGATTTGTCTCGGAATGGGGCAGTTGGCGCTGGAGTTGCCGCAGCTGCTGCAGAACATGCGACCAGAGCCGGAGCAGGTCCGACAGCCAATGTCACCGTCAGACCAGCGGGAGCAGAGGCAAGGGACTCGACCGGTGCTGTTGCAGGAGAGGCAGCGGGGGAAGGAACCGGCCATGGGCTTTTAGTCCATGACCGATTTGATGAGAACGGCGCCGGCGAGGACGCTGAGGGGGTGGCGAGCTGGAGGGGGGCGTCGGAAAACGGAGGCTTCCTCTTTCAGTTAAAAATAAAAAAAAATAAAAAAGAAGCAGCTGAAGCTTCGAGGAAGGAAAGAAGAAGAAGAAAAGAAGGAAAAAAATATGGCGGCTGCCGCCGCTATTCGCCGGCAGTCGGCGGCGGCCGGCCACCGGAGTTAAAGAAGAAGAAGATGGGGAAGAAGGAAGATGGAGATGGGGAAGAGAAAGGAGAAGGAGAATAG

Protein sequence

MGMIVGSTDEDLSRNGAVGAGVAAAAAEHATRAGAGPTANVTVRPAGAEARDSTGAVAGEAAGEGTGHGLLVHDRFDENGAGEDAEGVASWRGASENGGFLFQLKIKKNKKEAAEASRKERRRRKEGKKYGGCRRYSPAVGGGRPPELKKKKMGKKEDGDGEEKGEGE

Homology

[Close]

BLAST of Lag0006269 vs. NCBI nr
Match: TYK15728.1 (chlorophyll a-b binding protein 7 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 3.5e-16
Identity = 57/85 (67.06%), Postives = 62/85 (72.94%), Query Frame = 0


Query: 11  DLSRNGAVGAGVAAAAAEHATRAGAGPTANVTVRPAGAEARDSTGAVAGEAAGEGTGHGL 70
           DLS   A GAG A AAAEH TRAGAG  A+V+V PAGAE  D+  AVAG AAGEG GHGL
Sbjct: 264 DLSGKRAAGAGAATAAAEHTTRAGAGAAADVSVGPAGAETGDAASAVAGRAAGEGAGHGL 323

Query: 71  LVHDRFDENGAGEDAEGVASWRGAS 96
           +VHD FDE+GAGEDAE  A  R  S
Sbjct: 324 VVHDGFDEDGAGEDAEAEARKREES 348

[Close]

BLAST of Lag0006269 vs. NCBI nr
Match: RXH79902.1 (hypothetical protein DVH24_041049 [Malus domestica])

HSP 1 Score: 58.5 bits (140), Expect = 6.2e-05
Identity = 51/127 (40.16%), Postives = 65/127 (51.18%), Query Frame = 0


Query: 5   VGSTDEDLSRNGAVGAGVAAAAAEHATRAGAGPTANVTVRPAGAEARDSTGAVAGEAAGE 64
           VG+   DL+R          AA +  TRAG  P  ++T+ PA AEA D T +VA   A E
Sbjct: 374 VGALYGDLNRKRPTRTRPTTAATKRTTRAGTAPAPDITIGPARAEAGDPTRSVAPGTARE 433

Query: 65  GTGHGLLVHDRFDENGAGEDAEGVASWRGASENGGFLFQ------LKIKKNKKEAAEASR 124
           G GHGLLVHDRFDE+ A +DA          E GG L Q      L    +  E  E+  
Sbjct: 434 GAGHGLLVHDRFDEDRARQDA----------ETGGELSQHDRTSHLFGDASDNEGGESRE 490

Query: 125 KERRRRK 126
           +E ++RK
Sbjct: 494 REEKKRK 490

The following BLAST results are available for this feature:

BLAST of Lag0006269 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK15728.1	3.5e-16	67.06	chlorophyll a-b binding protein 7 [Cucumis melo var. makuwa]	[more]
RXH79902.1	6.2e-05	40.16	hypothetical protein DVH24_041049 [Malus domestica]	[more]

BLAST of Lag0006269 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..168
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 145..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0006269.1	Lag0006269.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
cellular_component	GO:0034357	photosynthetic membrane
cellular_component	GO:0009536	plastid